genome.fa.s21.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  112  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34022328--34022371	23	1.9	24	90	9	74	36	9	11	43	1.72
34023258--34023611	27	12.9	27	72	13	186	19	17	19	43	1.88
34023258--34023545	54	5.4	54	75	8	255	20	17	19	43	1.89
34023271--34023545	81	3.4	80	75	12	251	20	16	20	42	1.89
34023517--34023585	35	2.0	35	91	0	111	17	17	20	44	1.86
34023490--34023613	62	2.0	62	87	0	176	17	17	20	44	1.87
34027098--34027577	27	17.6	27	97	1	852	25	14	29	30	1.95
34027098--34027577	82	5.9	82	96	1	874	25	14	29	30	1.95
34051320--34051491	40	4.3	40	87	2	204	26	28	21	23	1.99
34051320--34051544	80	2.8	79	79	7	204	26	28	21	24	1.99
34051476--34051553	40	1.9	41	82	10	97	28	28	20	23	1.99
34058886--34058946	4	15.2	4	100	0	122	24	0	24	50	1.49
34059905--34060081	42	4.2	42	88	2	241	30	19	20	29	1.97
34066492--34066520	4	7.2	4	100	0	58	24	0	24	51	1.48
34066888--34066930	13	3.3	13	96	0	77	44	2	23	30	1.66
34067481--34067639	84	1.9	83	89	1	246	30	18	22	29	1.97
34067497--34067650	42	3.7	41	86	4	211	27	19	23	29	1.98
34080296--34080465	50	3.4	49	81	4	171	22	27	20	29	1.98
34080392--34080520	50	2.4	54	84	7	158	24	30	20	25	1.98
34086526--34086675	28	5.4	28	86	3	187	26	12	29	31	1.93
34086551--34086675	55	2.3	55	90	2	189	28	12	28	30	1.93
34102118--34102229	25	4.5	25	75	12	86	25	22	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34102118--34102229	50	2.2	50	87	3	154	25	22	21	31	1.98
34102160--34102233	25	3.0	25	78	7	87	27	21	20	31	1.98
34105347--34105522	27	6.5	26	83	2	145	27	15	26	29	1.96
34105346--34105501	82	1.9	81	84	6	208	28	16	26	28	1.97
34105374--34105522	55	2.7	54	83	4	165	27	15	28	28	1.96
34105342--34105522	82	2.2	81	80	4	204	28	16	26	29	1.96
34111262--34111631	200	1.9	200	94	0	650	25	21	25	28	1.99
34113635--34113812	27	6.6	27	83	3	205	26	14	28	30	1.95
34113636--34113791	82	1.9	81	86	3	224	26	14	28	30	1.95
34113632--34113812	82	2.2	81	82	2	220	27	14	27	30	1.95
34117270--34117394	47	2.7	48	76	8	132	25	20	29	24	1.99
34120893--34121023	47	2.8	47	82	0	163	34	22	16	26	1.95
34129873--34129941	27	2.5	28	93	4	115	27	28	15	27	1.96
34134274--34134428	42	3.7	41	81	3	184	30	13	25	30	1.94
34135515--34135562	20	2.4	20	96	0	87	20	37	31	10	1.87
34138930--34138978	2	24.5	2	95	0	89	0	46	0	53	1.00
34142281--34142326	22	2.1	22	100	0	92	32	8	26	32	1.87
34148032--34148843	48	16.9	48	99	0	1588	33	6	28	31	1.82
34148990--34149088	37	2.7	37	95	0	171	24	20	30	25	1.99
34156711--34156823	40	2.8	40	86	2	147	24	28	22	24	1.99
34159543--34159665	22	5.3	22	62	27	58	32	13	29	25	1.93
34159527--34159711	47	3.9	47	91	0	289	33	11	28	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34159916--34160067	37	4.1	38	93	3	247	23	19	30	26	1.98
34161509--34161821	157	2.0	157	98	0	608	31	25	15	28	1.95
34161978--34162233	128	2.0	128	97	0	485	42	22	10	25	1.85
34162491--34162811	161	2.0	161	96	1	599	28	25	12	33	1.92
34162994--34163351	177	2.0	177	98	0	689	36	19	8	35	1.82
34172695--34172929	50	4.7	50	87	0	326	26	20	30	22	1.98
34172695--34172986	50	5.8	50	82	0	325	28	20	28	22	1.99
34177227--34177252	7	3.7	7	100	0	52	46	38	0	15	1.46
34177605--34177646	20	2.0	21	86	4	59	45	19	2	33	1.63
34177605--34177647	21	2.0	21	82	8	52	46	18	2	32	1.62
34188707--34189254	44	12.5	44	71	16	238	27	22	20	29	1.99
34188780--34189034	88	2.9	88	78	9	302	26	23	20	29	1.98
34188665--34188947	132	2.1	132	79	10	301	28	22	20	28	1.98
34188646--34189254	216	2.8	219	86	5	802	26	23	20	29	1.99
34204183--34204242	25	2.3	26	88	2	95	35	10	23	31	1.88
34208217--34208313	48	2.0	48	97	0	185	26	8	21	43	1.81
34226143--34226200	29	2.0	29	86	3	80	55	3	0	41	1.17
34226148--34226195	21	2.3	21	82	7	53	54	4	0	41	1.20
34227265--34227295	14	2.2	14	94	0	53	70	0	0	29	0.87
34227588--34227654	23	2.7	23	84	15	89	35	1	0	62	1.04
34238154--34238249	37	2.6	37	89	0	147	29	13	21	35	1.92
34242761--34242795	18	1.9	18	88	0	52	54	17	0	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34242855--34242895	20	2.0	20	86	9	57	7	21	17	53	1.67
34244130--34244175	20	2.3	20	100	0	92	52	8	8	30	1.62
34249024--34249069	20	2.4	19	88	3	65	26	26	0	47	1.52
34249056--34249141	43	2.0	43	84	4	111	19	19	4	55	1.60
34250252--34250280	15	1.9	15	100	0	58	0	20	0	79	0.74
34252728--34252767	21	2.0	21	85	14	57	35	37	0	27	1.57
34254280--34254389	40	2.7	41	78	10	120	31	18	13	36	1.90
34258241--34258285	24	2.0	23	83	16	58	48	13	8	28	1.72
34259085--34259123	12	3.2	12	86	13	53	58	7	0	33	1.26
34259644--34259686	20	2.1	21	86	4	61	34	9	23	32	1.87
34260619--34260686	20	3.3	20	75	6	57	39	14	5	39	1.71
34260798--34260841	20	2.2	20	83	0	52	36	13	4	45	1.64
34260966--34261020	20	2.8	20	82	0	74	43	12	3	40	1.60
34261075--34261138	29	2.2	29	80	5	76	32	6	9	51	1.59
34263773--34263873	51	2.0	51	98	0	193	32	23	13	29	1.94
34264502--34264601	49	2.0	50	90	1	157	46	12	7	35	1.68
34266597--34266696	19	5.1	19	78	17	107	30	1	12	57	1.42
34267325--34267353	9	3.2	9	100	0	58	48	10	10	31	1.71
34273325--34273370	18	2.5	19	79	10	60	67	0	2	30	1.03
34273599--34273789	69	2.8	69	99	0	373	37	19	8	34	1.82
34276834--34277283	229	2.0	228	97	0	846	38	16	15	30	1.89
34279110--34279177	8	7.8	8	75	18	64	26	1	1	70	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34279110--34279178	17	3.9	16	75	15	66	26	1	1	71	1.03
34279110--34279175	9	7.3	9	71	19	57	25	1	1	71	1.04
34279123--34279214	19	4.8	19	76	10	73	30	1	1	67	1.05
34279142--34279230	28	3.2	27	80	9	83	30	1	0	68	0.97
34279117--34279230	9	12.4	9	69	19	67	28	1	0	69	1.04
34281206--34281275	35	2.1	33	81	10	79	75	2	17	4	1.08
34281213--34281275	19	3.5	18	78	12	67	74	3	17	4	1.12
34283070--34283140	36	2.0	36	91	0	115	46	15	12	25	1.81
34283087--34283140	17	2.9	19	71	20	60	46	16	12	24	1.82
34288131--34288182	19	2.8	19	72	16	56	44	17	13	25	1.85
34295254--34295282	12	2.3	13	94	5	51	20	6	6	65	1.40
34297547--34297607	30	2.0	30	96	0	113	36	16	21	26	1.94
34302150--34302208	24	2.5	24	80	2	66	38	1	3	55	1.26
34302226--34302273	20	2.3	21	85	7	62	41	0	0	58	0.98
34302438--34302488	16	3.2	16	86	5	68	31	27	1	39	1.68
34302746--34302787	19	2.4	17	88	11	59	40	0	0	59	0.97
34303600--34303642	22	2.0	22	95	0	77	51	6	11	30	1.65
34303709--34303748	18	2.3	18	86	4	55	72	0	0	27	0.85
34305488--34305547	23	2.6	23	81	7	68	50	11	3	35	1.56
34313790--34313883	48	2.0	48	89	4	145	71	5	6	17	1.26
34314912--34314970	15	4.1	15	78	8	68	15	10	38	35	1.81
34315334--34315709	50	7.5	50	74	4	310	23	20	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34315330--34315709	100	3.8	100	88	1	528	23	20	24	31	1.98
34315728--34316312	87	6.7	87	91	0	906	23	23	23	29	1.99
34316079--34316215	43	3.2	43	63	17	111	22	21	26	29	1.99
34317527--34317569	7	6.4	7	78	10	54	16	16	2	65	1.38
34317536--34317569	13	2.5	13	90	4	50	14	14	2	67	1.34
34318452--34318571	53	2.2	55	81	7	147	11	15	5	68	1.36
34322415--34322460	21	2.3	20	78	14	51	45	17	6	30	1.73
34325031--34325492	239	1.9	239	88	0	701	36	25	8	29	1.86
34326526--34326555	15	2.0	15	93	0	51	60	3	23	13	1.48
34326583--34326621	6	6.3	6	82	5	51	61	0	20	17	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182