genome.fa.s21.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  42  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13323318--13323343	6	4.3	6	100	0	52	15	0	0	84	0.62
13337181--13337205	13	1.9	13	100	0	50	68	16	0	16	1.22
13337914--13338018	41	2.6	41	90	0	165	24	21	23	29	1.99
13347372--13347408	10	3.6	10	88	3	56	29	0	2	67	1.04
13348664--13348701	19	2.0	19	89	0	58	21	0	15	63	1.31
13350895--13351780	443	2.0	443	96	0	1646	27	20	25	26	1.99
13352132--13352318	74	2.6	75	89	5	287	52	13	5	28	1.62
13354570--13354824	104	2.5	102	84	3	327	55	13	1	29	1.46
13354746--13354793	22	2.2	22	82	14	55	62	8	0	29	1.24
13354729--13354911	87	2.1	89	86	3	253	55	13	0	30	1.43
13354881--13355059	92	1.9	95	86	3	256	56	16	1	25	1.47
13355563--13355599	19	1.9	20	94	5	67	54	0	0	45	1.00
13365759--13365864	51	2.1	51	96	0	194	40	9	31	18	1.83
13374495--13374532	15	2.6	15	83	4	51	71	2	7	18	1.23
13375923--13376003	38	2.1	38	83	0	99	37	23	16	23	1.94
13378995--13379038	23	1.9	22	82	17	54	36	25	0	38	1.56
13379179--13379318	51	2.7	51	81	4	183	33	25	16	25	1.96
13380586--13380631	21	2.2	21	88	0	65	30	39	2	28	1.69
13394943--13394978	13	2.8	13	100	0	72	33	25	8	33	1.86
13395378--13395407	16	1.9	15	93	6	51	13	0	6	80	0.91
13395373--13395458	22	3.6	22	76	21	68	20	5	4	68	1.29
13397639--13397747	49	2.2	49	90	3	166	27	30	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13401019--13401060	13	3.1	14	83	10	52	76	0	7	16	1.00
13401858--13402391	147	3.6	146	87	6	698	43	10	3	42	1.57
13402720--13402759	3	13.0	3	86	5	53	60	2	0	37	1.11
13406423--13406463	20	2.0	20	85	0	55	68	2	9	19	1.29
13414338--13414370	8	4.1	8	100	0	66	24	0	0	75	0.80
13422278--13422303	13	2.0	13	100	0	52	46	0	0	53	1.00
13422624--13422667	21	2.1	21	87	8	63	63	6	2	27	1.31
13422632--13422686	21	2.5	22	80	14	60	60	7	0	32	1.24
13424147--13424194	15	3.3	15	79	5	62	60	2	0	37	1.09
13424522--13424555	14	2.4	14	100	0	68	41	0	5	52	1.25
13428233--13428363	45	2.9	45	79	2	147	40	12	20	26	1.88
13428454--13428543	27	3.3	27	77	0	99	43	15	18	22	1.88
13442936--13442989	24	2.3	23	82	17	67	62	1	1	33	1.16
13460121--13460170	24	2.1	24	96	0	91	30	48	2	20	1.61
13465106--13465208	51	2.0	51	94	0	179	32	20	11	35	1.89
13465823--13465871	15	3.4	14	80	8	53	20	4	2	73	1.10
13471488--13471617	41	3.1	41	71	14	129	31	20	18	30	1.96
13471488--13471661	85	2.0	85	84	4	226	31	20	17	31	1.96
13471728--13471934	44	4.8	42	72	10	159	28	19	18	34	1.95
13471555--13471950	142	3.0	132	83	9	543	28	20	18	32	1.96
13484372--13484405	13	2.8	12	91	8	52	20	0	0	79	0.73
13497554--13497590	19	1.9	19	94	0	65	0	43	10	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13497612--13497673	15	4.1	15	78	15	65	0	24	8	67	1.17
13497635--13497668	13	2.7	13	95	4	61	0	29	8	61	1.26
13497630--13497699	30	2.3	30	85	7	88	4	30	11	54	1.55
13499549--13499600	15	3.6	15	80	12	56	44	0	1	53	1.11
13499678--13499719	15	2.7	16	82	14	52	45	0	2	52	1.13
13499669--13499710	15	2.9	15	82	10	52	47	0	0	52	1.00
13499936--13499987	16	3.2	16	94	0	95	36	36	0	26	1.57
13503760--13503796	17	2.1	19	90	10	60	78	0	21	0	0.75
13506560--13506614	25	2.3	23	77	17	60	56	5	1	36	1.33
13507032--13507076	22	2.0	22	83	12	56	33	6	8	51	1.59
13507945--13507969	8	3.1	8	100	0	50	12	52	12	24	1.72
13520065--13521236	44	26.8	44	72	11	529	29	19	23	27	1.98
13520236--13520612	177	2.1	178	89	3	564	29	19	23	27	1.98
13520413--13521334	219	4.2	219	95	1	1572	29	18	23	27	1.98
13521065--13521180	46	2.6	47	81	8	116	28	19	23	28	1.98
13530176--13530287	25	4.5	25	80	6	120	31	23	21	24	1.98
13530254--13530307	25	2.2	24	86	3	72	38	16	22	22	1.93
13530398--13530422	11	2.3	11	100	0	50	44	8	8	40	1.63
13531196--13531238	23	1.9	23	86	13	63	39	23	0	37	1.55
13535321--13535372	23	2.3	22	75	21	54	9	23	1	65	1.32
13536943--13537058	60	1.9	60	100	0	232	27	25	27	19	1.99
13539207--13539259	23	2.4	22	76	20	56	9	18	1	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13543567--13543659	7	13.7	7	71	10	59	22	0	31	46	1.52
13543582--13543625	13	3.4	13	87	6	54	15	0	31	52	1.44
13543567--13543659	20	4.6	21	70	16	61	22	0	31	46	1.52
13543602--13543659	28	2.1	27	84	9	73	25	0	27	46	1.53
13543629--13543671	20	2.1	20	86	4	59	25	2	30	41	1.68
13543814--13543898	21	4.1	20	69	14	55	18	1	31	48	1.56
13543960--13544012	21	2.5	21	77	17	56	22	3	24	49	1.66
13543995--13544033	14	2.8	14	84	0	51	28	2	25	43	1.68
13544062--13544118	21	2.8	20	79	12	62	22	1	26	49	1.60
13544692--13544793	14	7.4	14	70	12	68	52	33	0	13	1.41
13544692--13544792	20	4.9	20	80	10	98	53	32	0	13	1.41
13544692--13544784	7	13.4	7	68	10	57	53	32	0	13	1.40
13544827--13544867	20	2.0	20	85	4	55	26	7	24	41	1.81
13548331--13548371	5	8.0	5	97	2	73	41	0	0	58	0.98
13549714--13549806	30	3.1	30	93	3	152	26	25	6	40	1.80
13549724--13549800	15	5.2	15	68	13	61	27	23	7	41	1.81
13550935--13551199	43	6.1	43	86	4	354	29	27	17	25	1.98
13550935--13551199	130	2.0	129	85	6	358	29	27	17	25	1.98
13555641--13555693	14	3.7	14	84	2	52	47	33	0	18	1.49
13555870--13556174	41	7.4	41	82	2	335	30	25	19	24	1.98
13555870--13556208	123	2.8	122	80	4	385	30	25	18	25	1.98
13559532--13559915	192	2.0	191	95	0	687	34	13	19	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13579519--13579575	30	1.9	30	86	13	82	57	3	1	36	1.26
13579560--13579621	20	3.3	19	76	17	67	58	1	1	38	1.18
13579516--13579608	27	3.3	27	76	18	75	59	2	2	36	1.22
13579549--13579634	36	2.4	38	78	7	108	55	1	1	41	1.14
13583812--13583862	23	2.2	23	92	0	84	41	21	9	27	1.84
13585549--13585600	21	2.5	21	87	0	77	19	15	11	53	1.71
13586306--13586347	22	1.9	22	90	0	66	11	21	26	40	1.88
13586411--13586739	43	7.6	43	84	3	376	31	31	16	21	1.95
13586411--13586730	173	1.8	173	85	4	448	30	31	16	21	1.95
13590464--13590522	22	2.7	23	78	7	68	28	1	40	28	1.66
13590765--13590908	76	1.9	76	97	1	272	34	9	13	43	1.76
13591016--13591101	46	1.9	44	85	4	118	33	8	13	44	1.74
13591116--13591366	76	3.3	76	91	6	413	31	9	14	43	1.78
13591185--13591787	229	2.9	192	73	21	578	30	11	14	43	1.81
13591260--13591705	115	3.9	114	90	5	688	28	12	15	43	1.82
13591605--13591861	75	3.4	75	95	2	446	31	9	14	43	1.78
13592224--13592262	19	2.1	19	95	0	69	28	5	5	61	1.39
13592838--13593018	89	2.0	89	85	3	240	44	27	2	25	1.66
13593038--13593090	14	3.8	14	76	0	52	41	35	0	22	1.54
13593176--13593222	20	2.5	20	86	6	62	48	23	0	27	1.51
13593503--13593742	41	5.9	41	87	0	372	29	24	24	21	1.99
13593503--13593742	82	2.9	82	96	0	426	29	24	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13596377--13596421	13	3.4	14	82	17	53	46	0	15	37	1.46
13598635--13598704	28	2.5	28	90	4	106	40	10	1	48	1.45
13598773--13598839	27	2.5	27	95	0	116	25	28	31	14	1.95
13598860--13598934	27	2.8	26	88	8	105	25	28	30	16	1.96
13599210--13599241	3	10.7	3	100	0	64	34	0	0	65	0.93
13602528--13602593	26	2.5	27	87	4	100	46	1	9	42	1.44
13602629--13602669	19	2.2	19	86	8	57	73	4	0	21	1.02
13603355--13603490	38	3.5	37	78	11	132	1	30	0	67	0.99
13603670--13603738	28	2.5	28	88	2	104	50	1	8	39	1.42
13606394--13606432	20	1.9	20	84	5	51	25	2	7	64	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182