genome.fa.s21.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  146  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44885865--44885941	33	2.3	33	84	2	91	41	35	9	14	1.77
44892720--44892946	43	5.3	43	83	5	273	28	30	17	23	1.97
44892720--44892946	86	2.6	87	86	4	311	28	30	17	23	1.97
44895776--44895813	15	2.4	17	86	8	53	68	2	0	28	1.03
44898326--44898710	137	2.7	138	85	7	499	27	14	11	45	1.80
44899344--44899431	14	6.1	14	73	15	65	36	39	0	23	1.55
44899393--44899445	21	2.5	22	81	9	65	39	39	0	20	1.53
44899708--44899746	15	2.7	15	88	4	53	33	41	0	25	1.56
44900000--44900645	114	5.7	114	87	3	908	25	26	22	25	2.00
44899991--44900644	226	2.9	226	89	2	927	25	26	22	25	2.00
44900002--44900645	340	1.9	340	88	2	972	25	26	22	25	2.00
44900823--44900867	22	2.0	23	82	4	56	42	24	2	31	1.67
44900994--44901039	23	2.0	23	100	0	92	26	13	21	39	1.90
44907271--44907758	143	3.4	143	93	2	786	33	8	28	28	1.87
44907271--44907758	47	10.3	47	94	2	764	33	8	28	28	1.87
44919190--44919370	49	3.7	49	93	1	312	34	7	27	31	1.84
44929813--44929861	17	2.9	17	78	3	55	24	20	8	46	1.77
44931528--44931607	22	3.5	22	75	5	70	40	21	23	15	1.91
44932509--44932538	10	3.0	10	95	0	51	3	20	0	76	0.92
44932505--44932544	16	2.4	16	87	4	53	2	17	2	77	0.99
44932598--44932652	5	11.0	5	100	0	110	60	0	0	40	0.97
44934646--44934685	21	1.9	21	85	10	55	62	10	5	22	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44937598--44937662	31	2.2	31	86	5	89	32	16	7	43	1.77
44939910--44939963	25	2.1	26	89	3	83	50	3	0	46	1.19
44940498--44940701	110	1.9	107	88	3	309	34	18	23	24	1.96
44940703--44940946	112	2.2	111	90	3	384	35	17	12	34	1.88
44941768--44941793	11	2.4	11	100	0	52	23	38	0	38	1.55
44942957--44942982	7	3.7	7	100	0	52	26	0	15	57	1.38
44944128--44944337	116	1.8	116	85	5	298	42	5	5	47	1.48
44947342--44947473	67	2.0	68	86	1	185	25	15	25	33	1.95
44947452--44947561	43	2.6	43	80	11	129	20	19	28	32	1.96
44950055--44950346	126	2.3	126	89	3	437	28	20	20	31	1.97
44950383--44950678	96	3.2	95	83	6	340	40	19	2	37	1.65
44951233--44951370	9	14.6	9	69	14	57	58	5	2	33	1.35
44952250--44952331	29	2.8	29	92	0	128	36	10	19	32	1.87
44954280--44954467	50	3.7	50	84	2	243	25	22	29	22	1.99
44954286--44954467	100	1.8	100	87	1	274	25	21	30	21	1.99
44966108--44966148	22	1.9	22	85	5	57	29	0	29	41	1.56
44966418--44966448	16	1.9	16	93	0	53	67	0	12	19	1.22
44971753--44972015	40	6.6	40	88	3	325	24	20	27	26	1.99
44971792--44972050	80	3.3	80	85	3	256	25	20	27	25	1.99
44977808--44977884	26	3.1	26	85	7	99	23	3	0	72	1.01
44977809--44977873	22	2.9	23	73	17	64	23	3	0	73	0.97
44977824--44977874	17	2.9	18	82	11	61	23	3	0	72	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44979739--44979773	15	2.4	15	90	4	54	48	0	8	42	1.33
44984320--44984345	2	13.0	2	100	0	52	50	0	0	50	1.00
44984346--44984711	63	5.9	63	84	9	459	34	5	16	43	1.72
44984346--44984711	123	3.0	123	89	2	522	34	5	16	43	1.72
44989522--44989630	28	3.9	27	77	8	112	29	24	16	29	1.97
44989806--44990062	53	4.8	53	78	5	160	28	24	12	34	1.91
44989806--44990008	53	3.8	53	80	4	176	29	25	11	33	1.92
44994206--44994324	61	1.9	62	86	1	168	48	19	15	16	1.81
44997939--44997996	3	19.3	3	100	0	116	32	0	0	67	0.91
45001779--45001822	17	2.6	17	100	0	88	9	25	43	22	1.82
45006964--45007080	51	2.3	51	92	0	198	34	15	23	27	1.94
45015193--45015243	17	2.8	18	88	5	68	56	0	37	5	1.23
45017119--45017181	30	2.1	30	96	0	117	57	15	3	23	1.53
45019406--45019491	21	4.3	20	71	18	63	50	1	1	47	1.16
45019364--45019494	55	2.3	56	88	5	183	50	0	2	46	1.19
45019364--45019498	29	4.8	27	70	16	87	49	0	2	47	1.19
45019364--45019518	55	2.7	58	84	5	174	50	0	1	47	1.17
45023323--45023357	17	2.1	17	89	10	54	71	5	2	20	1.19
45026208--45026268	20	3.3	18	80	13	61	49	4	3	42	1.40
45026207--45026253	19	2.4	19	82	13	60	48	4	2	44	1.34
45026932--45026972	12	3.4	12	82	0	55	46	17	9	26	1.79
45030575--45030630	29	1.9	29	100	0	112	28	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45035174--45035208	3	11.7	3	87	0	52	34	5	0	60	1.21
45035574--45035891	150	2.1	147	83	6	385	42	5	9	42	1.60
45042004--45042082	39	2.0	39	87	0	113	48	21	3	26	1.67
45043198--45043293	31	3.1	31	95	3	174	45	13	9	31	1.75
45045767--45045817	18	2.8	18	79	11	59	0	17	15	66	1.25
45045777--45045873	29	3.5	28	81	9	119	1	17	12	69	1.25
45045829--45045882	9	5.9	9	76	4	54	1	12	11	74	1.16
45045841--45045890	20	2.7	18	80	17	57	2	10	10	78	1.06
45045777--45045884	27	4.0	27	80	7	121	1	16	11	70	1.25
45046436--45046497	32	1.9	32	100	0	124	43	12	9	33	1.76
45050672--45050706	15	2.3	15	95	0	61	65	11	0	22	1.24
45050796--45050866	24	3.1	24	81	16	73	69	5	5	19	1.30
45051020--45051061	3	14.3	3	95	5	77	69	0	0	30	0.89
45052817--45053766	44	21.9	44	69	16	363	27	22	20	29	1.98
45052739--45053762	217	4.7	217	87	3	1409	27	22	20	29	1.98
45052869--45053106	89	2.7	85	80	11	252	29	22	19	28	1.98
45065627--45065661	15	2.3	15	95	0	61	65	11	0	22	1.24
45065764--45065824	24	2.7	24	83	16	69	70	6	6	16	1.30
45065976--45066014	3	13.3	3	94	5	71	69	0	0	30	0.89
45067803--45067903	41	2.5	41	85	0	139	32	23	12	30	1.92
45068447--45068484	19	2.1	18	95	5	67	18	0	0	81	0.69
45068445--45068483	11	3.5	11	83	16	53	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45069782--45069821	16	2.4	17	83	12	55	10	35	0	55	1.34
45072533--45072578	20	2.3	20	84	0	56	76	10	6	6	1.16
45075292--45075554	89	3.0	89	86	4	367	33	24	20	20	1.97
45075578--45075705	41	3.1	41	80	2	141	15	21	29	33	1.94
45076630--45076670	14	2.9	14	85	3	55	21	0	36	41	1.54
45076682--45076716	15	2.3	15	85	0	52	17	0	42	40	1.49
45077035--45078026	338	2.9	332	78	5	1010	31	16	17	34	1.92
45078293--45078318	6	4.3	6	100	0	52	0	61	0	38	0.96
45078379--45078427	25	2.0	25	91	0	80	4	36	4	55	1.38
45081323--45081379	30	1.9	30	92	0	96	43	10	14	31	1.79
45081389--45081434	19	2.5	18	82	3	56	34	2	4	58	1.30
45081546--45081601	21	2.7	21	86	5	78	26	35	8	28	1.87
45083098--45083128	9	3.4	9	95	0	53	29	25	0	45	1.54
45083139--45083202	13	4.8	13	76	17	60	45	14	1	39	1.54
45083145--45083248	40	2.7	38	81	4	118	44	13	2	39	1.59
45083190--45083321	30	4.5	29	68	21	96	43	12	4	38	1.63
45083234--45083276	18	2.5	17	88	7	68	44	11	0	44	1.40
45083170--45083363	87	2.2	87	100	0	388	43	12	3	41	1.58
45083253--45083289	13	2.8	13	87	0	56	43	13	2	40	1.58
45083235--45083409	74	2.4	69	71	15	158	43	12	2	41	1.55
45083321--45083409	18	4.8	18	80	14	101	43	12	1	42	1.49
45083216--45083361	31	4.9	30	72	13	131	43	13	2	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45083317--45083416	39	2.5	41	82	14	120	43	12	1	44	1.48
45083321--45083381	17	3.5	17	86	4	86	44	13	0	42	1.43
45083586--45083988	16	26.6	16	63	20	106	49	17	2	30	1.60
45083586--45083916	44	7.7	44	75	15	280	49	17	2	30	1.58
45083791--45083935	25	6.3	23	73	9	100	49	17	2	31	1.58
45083819--45083905	21	4.0	21	72	5	66	52	14	2	29	1.54
45083593--45084129	214	2.5	218	91	3	867	48	18	2	30	1.61
45084041--45084103	21	2.9	22	78	4	74	52	15	1	30	1.53
45086432--45086482	21	2.4	21	83	0	57	35	15	43	5	1.71
45086833--45087224	43	9.2	43	83	2	378	30	20	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182