genome.fa.s21.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  159  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48904280--48904319	14	2.8	15	85	14	50	42	17	12	27	1.85
48906725--48906828	54	1.9	54	84	0	136	36	16	25	21	1.94
48906731--48906843	27	4.2	27	74	0	100	36	17	25	20	1.94
48914998--48915072	33	2.4	30	87	10	91	22	18	9	49	1.76
48915010--48915075	33	2.0	33	100	0	132	27	18	9	45	1.79
48915023--48915080	18	3.4	18	64	22	52	25	18	8	46	1.78
48923530--48923685	83	1.9	83	93	0	267	29	13	24	32	1.93
48927347--48927442	38	2.5	38	96	0	174	34	19	21	23	1.97
48927347--48927457	38	2.9	37	86	5	152	36	18	19	25	1.95
48933609--48933706	38	2.6	37	81	3	115	39	1	8	51	1.39
48954505--48954733	44	5.3	44	71	7	171	25	19	23	31	1.98
48954531--48954811	129	2.2	129	85	3	379	24	21	22	30	1.98
48954940--48955197	89	2.9	91	83	6	346	25	25	22	25	2.00
48954971--48955234	45	5.9	45	67	17	138	26	25	21	26	1.99
48968574--48968607	16	2.2	16	89	5	52	5	2	32	58	1.37
48969296--48969327	9	3.4	10	87	12	50	65	0	0	34	0.93
48969731--48969825	17	5.6	17	68	18	54	41	2	4	52	1.32
48969800--48969915	58	2.0	58	88	6	171	41	1	4	52	1.31
48975034--48975066	10	3.2	10	91	8	57	12	18	12	57	1.64
48979866--48979930	16	4.4	16	67	25	52	20	26	1	52	1.55
48979850--48979935	43	2.0	43	93	0	145	23	24	1	51	1.56
48979870--48979908	15	2.6	14	80	11	51	23	23	0	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48981058--48981097	19	2.1	19	86	9	55	2	25	0	72	0.97
48981139--48981189	19	2.6	20	84	3	59	43	5	1	49	1.38
48987856--48988006	49	3.0	51	80	2	162	26	14	23	35	1.94
48993835--48994102	27	10.0	27	77	3	188	28	25	21	25	1.99
48993837--48994102	81	3.3	80	81	3	282	28	25	21	25	1.99
48994623--48994738	38	3.0	38	81	3	117	33	29	11	25	1.91
48996628--48996660	3	11.0	3	100	0	66	33	0	0	66	0.92
48997294--48997488	99	2.0	99	95	0	354	39	18	3	38	1.67
48997324--48997476	45	3.2	45	65	21	121	37	18	3	39	1.69
48999685--48999709	11	2.3	11	100	0	50	44	8	12	36	1.71
49012978--49013030	23	2.3	23	86	0	79	43	15	9	32	1.78
49013862--49013963	41	2.5	41	80	4	118	32	28	18	20	1.96
49020979--49021096	41	2.9	40	76	6	123	33	27	18	20	1.96
49024887--49025087	27	7.4	27	80	2	168	36	13	23	25	1.92
49029193--49029503	45	6.8	45	87	2	435	45	16	17	20	1.85
49029192--49029503	137	2.3	137	89	1	457	45	16	17	20	1.85
49029193--49029502	91	3.4	90	90	2	460	45	16	17	20	1.85
49029194--49029503	46	6.8	45	87	2	433	45	16	17	20	1.85
49029870--49029900	13	2.4	13	94	0	53	41	6	9	41	1.63
49035390--49035438	25	2.0	25	95	0	89	20	10	20	48	1.78
49037577--49037616	19	2.1	19	95	0	71	45	5	5	45	1.47
49039012--49039230	110	2.0	110	98	0	420	31	12	19	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49042418--49042830	132	3.1	131	88	0	610	25	25	19	30	1.98
49046083--49046311	44	5.2	43	68	13	133	25	26	22	26	2.00
49046080--49046311	88	2.6	89	89	2	369	25	25	22	25	2.00
49046412--49046526	44	2.6	44	90	0	167	30	20	20	28	1.98
49046626--49046751	42	2.9	43	81	6	148	27	21	17	33	1.96
49053160--49053189	15	1.9	16	93	6	53	63	10	0	26	1.26
49053970--49054012	23	1.9	23	90	4	70	44	13	4	37	1.65
49054744--49054838	46	2.0	47	93	2	165	44	9	7	38	1.65
49062663--49062727	30	2.2	30	83	5	78	40	6	10	43	1.65
49065774--49065798	9	2.8	9	100	0	50	88	0	0	12	0.53
49070474--49070663	50	3.7	50	80	4	182	29	22	24	23	1.99
49072168--49072198	13	2.4	13	100	0	62	32	25	6	35	1.82
49073681--49073817	38	3.6	38	85	2	150	30	25	22	21	1.99
49075753--49075791	20	1.9	21	85	15	55	48	7	12	30	1.69
49079728--49079773	19	2.2	21	77	11	51	45	6	8	39	1.61
49087071--49087296	111	2.0	111	95	0	407	23	23	15	37	1.93
49091414--49091461	17	2.8	17	72	12	53	66	2	12	18	1.33
49101598--49101686	30	3.0	30	88	8	137	30	22	22	24	1.99
49101595--49101681	28	3.0	28	90	6	138	31	22	22	22	1.99
49101789--49101869	26	3.1	26	85	7	119	34	22	20	22	1.97
49102039--49102796	27	28.2	26	79	7	546	20	18	20	40	1.92
49102039--49102796	107	7.1	107	80	6	669	20	18	20	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49105244--49105276	17	1.9	17	93	0	57	30	24	0	45	1.53
49107645--49107705	20	3.3	20	65	25	62	59	1	6	32	1.33
49107640--49107711	34	2.1	34	97	0	135	54	1	6	37	1.36
49108043--49108210	2	84.0	2	98	0	327	0	49	0	50	1.05
49112940--49112990	22	2.3	22	93	0	84	41	17	7	33	1.79
49116623--49116704	31	2.8	29	75	17	87	34	10	13	41	1.79
49116835--49116903	30	2.3	30	85	9	97	55	8	1	34	1.40
49116850--49116926	29	2.6	29	79	6	82	53	10	0	36	1.35
49117926--49117968	8	5.4	8	77	0	50	46	11	4	37	1.61
49117925--49117976	12	4.3	12	82	0	68	46	11	3	38	1.59
49117925--49117976	24	2.2	24	92	0	86	46	11	3	38	1.59
49120804--49121353	276	2.0	276	99	0	1091	22	23	14	40	1.90
49124544--49124585	20	2.1	20	90	0	66	21	2	33	42	1.66
49125702--49125731	5	6.0	5	100	0	60	40	0	0	60	0.97
49126580--49126638	25	2.3	27	80	16	72	45	3	23	27	1.68
49129881--49129927	24	2.0	24	84	16	62	31	0	17	51	1.46
49130471--49130517	24	2.0	24	84	16	62	31	0	17	51	1.46
49129619--49130798	590	2.0	590	99	0	2333	32	10	20	37	1.86
49130676--49130813	40	3.5	40	73	6	129	26	18	24	29	1.98
49132455--49132501	24	2.0	24	84	16	62	31	0	17	51	1.46
49132660--49132797	40	3.5	40	73	6	129	26	18	24	29	1.98
49155821--49155904	35	2.4	34	82	11	98	28	29	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49166776--49166810	2	17.5	2	100	0	70	0	48	0	51	1.00
49178017--49178220	70	2.9	69	81	5	232	32	26	17	23	1.96
49181284--49181359	33	2.3	33	81	0	89	27	18	32	21	1.96
49181489--49181526	20	1.9	20	94	0	67	36	15	26	21	1.93
49183113--49183168	23	2.4	24	85	8	71	28	19	12	39	1.88
49185503--49185546	21	2.1	21	83	8	54	54	0	6	38	1.27
49190817--49190857	13	2.9	15	79	20	52	58	0	0	41	0.98
49194343--49194436	47	2.0	47	91	0	152	30	15	18	35	1.92
49201634--49202179	268	2.0	268	100	0	1092	39	20	14	26	1.90
49209193--49209239	18	2.6	18	83	6	60	23	10	51	14	1.74
49217666--49217725	26	2.3	27	91	2	95	35	25	15	25	1.94
49217679--49217741	27	2.4	27	86	5	85	38	25	12	23	1.90
49217679--49217765	26	3.3	26	82	3	93	34	24	13	27	1.93
49224695--49224942	27	9.2	27	82	6	236	45	19	14	20	1.85
49224695--49224972	54	5.2	53	77	8	262	44	19	14	21	1.85
49224634--49224943	81	3.8	79	79	11	290	45	18	14	21	1.85
49225309--49225509	56	3.6	56	87	2	296	23	22	23	29	1.99
49225320--49225509	28	6.8	28	87	3	267	23	22	24	29	1.99
49228637--49228695	21	2.8	20	79	7	64	55	13	3	27	1.54
49229451--49229510	20	3.0	20	82	0	84	33	6	13	46	1.69
49231619--49231902	142	2.0	142	96	0	523	50	15	7	27	1.70
49233030--49233091	9	7.1	9	85	5	65	38	20	9	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49233040--49233094	9	6.2	9	91	4	94	32	20	10	36	1.87
49233032--49233094	17	3.6	17	79	14	74	34	20	9	34	1.85
49233032--49233093	26	2.4	26	94	0	106	35	20	9	33	1.86
49233092--49233236	37	4.1	37	86	8	219	46	14	4	33	1.66
49233119--49233182	20	3.3	20	70	12	71	43	17	6	32	1.74
49233102--49233162	17	3.4	17	68	12	50	52	13	3	31	1.56
49233092--49233236	69	2.0	71	90	6	231	46	14	4	33	1.66
49233120--49233270	69	2.2	68	86	3	205	47	13	5	33	1.68
49237166--49237194	13	2.2	13	100	0	58	24	6	13	55	1.63
49237194--49237310	19	5.5	19	66	25	65	21	1	35	41	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182