genome.fa.s21.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  181  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55261077--55261400	65	5.0	65	92	2	503	42	2	9	45	1.50
55261381--55261425	25	2.0	22	83	16	56	46	2	6	44	1.42
55264156--55264195	21	2.0	20	85	14	55	17	7	0	75	1.03
55264534--55264770	90	2.7	89	94	3	406	45	26	1	26	1.63
55264525--55264813	90	3.3	87	87	8	387	44	27	1	26	1.64
55264713--55264886	85	2.1	81	80	10	183	45	23	1	29	1.63
55265341--55266166	113	7.3	114	87	3	1134	31	24	21	22	1.98
55265341--55266166	340	2.4	338	87	5	1189	31	24	21	22	1.98
55270684--55270716	3	11.0	3	100	0	66	66	0	33	0	0.92
55271849--55271896	16	2.9	16	85	11	62	54	0	0	45	0.99
55271927--55271965	18	2.2	18	85	0	51	56	0	0	43	0.99
55276714--55276767	24	2.3	24	80	3	65	46	18	14	20	1.84
55281026--55281084	24	2.4	26	75	11	61	47	10	6	35	1.64
55282125--55282164	21	2.0	20	85	5	53	32	0	17	50	1.47
55282829--55282874	3	16.0	3	84	8	60	0	60	2	36	1.09
55284789--55284917	64	2.0	65	98	1	251	21	15	15	47	1.82
55291780--55291805	13	2.0	13	100	0	52	0	0	15	84	0.62
55298410--55298470	28	2.2	28	85	5	79	62	4	3	29	1.32
55301291--55301334	21	2.1	21	87	8	63	59	9	0	31	1.29
55302075--55302126	26	2.0	26	100	0	104	34	11	23	30	1.90
55305073--55305105	17	1.9	18	88	11	52	51	0	9	39	1.34
55309042--55309071	7	4.4	7	91	8	53	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55309042--55309071	13	2.2	14	94	5	53	73	0	0	26	0.84
55313648--55313815	83	2.0	83	97	0	318	35	6	8	50	1.59
55321169--55321193	7	3.6	7	100	0	50	48	0	0	52	1.00
55321656--55321721	31	2.1	31	91	0	105	27	7	13	51	1.68
55325808--55325867	23	2.5	24	76	15	61	38	1	8	51	1.42
55330692--55330761	16	4.4	16	94	0	104	31	0	34	34	1.58
55330740--55330849	45	2.6	41	78	9	116	35	4	28	31	1.77
55333792--55333828	19	1.9	19	88	0	56	51	0	10	37	1.37
55334055--55334135	35	2.4	36	78	15	84	48	2	2	46	1.28
55341653--55341702	27	1.9	27	84	8	68	36	4	0	60	1.16
55343101--55343158	30	1.9	30	86	6	82	62	6	0	31	1.22
55345105--55345141	8	4.6	8	89	0	56	51	10	0	37	1.37
55352379--55352417	19	2.1	19	85	9	53	35	7	10	46	1.67
55365179--55365226	16	3.1	15	90	6	69	64	2	2	31	1.16
55365175--55365230	24	2.3	24	81	6	69	66	1	1	30	1.12
55365175--55365226	8	6.5	8	82	8	61	65	1	1	30	1.14
55365379--55365443	25	2.8	24	83	6	80	52	6	7	33	1.55
55365462--55365545	25	3.2	25	76	6	78	57	1	4	36	1.28
55365464--55365597	25	5.6	25	69	15	77	57	2	4	35	1.31
55366085--55366259	30	5.8	30	94	0	305	21	3	49	25	1.65
55378390--55378423	8	4.5	8	96	3	54	64	5	0	29	1.17
55378379--55378434	24	2.3	24	77	17	62	66	3	1	28	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55378383--55378430	16	3.1	15	84	6	60	64	4	2	29	1.23
55378585--55378649	25	2.8	24	83	6	80	52	6	7	33	1.55
55378668--55378751	25	3.2	25	76	6	78	55	2	4	36	1.34
55378670--55378803	23	5.6	25	71	15	86	56	2	4	35	1.35
55379294--55379408	30	3.8	30	94	0	203	20	3	49	26	1.65
55386367--55386418	24	2.2	24	89	0	77	55	9	1	32	1.43
55388337--55388388	24	2.2	24	89	0	77	55	9	1	32	1.43
55395071--55395112	18	2.3	18	91	0	66	54	2	0	42	1.13
55402299--55402341	22	2.0	21	86	8	61	34	0	2	62	1.08
55419263--55419967	142	5.0	141	88	2	1040	43	16	14	25	1.86
55419264--55419967	281	2.5	279	89	4	1099	43	16	14	25	1.86
55420022--55420048	10	2.7	10	100	0	54	37	33	18	11	1.86
55420950--55420999	22	2.2	21	83	16	57	62	2	2	34	1.18
55420955--55421016	28	2.2	28	80	13	74	64	3	1	30	1.19
55421387--55421441	24	2.2	25	83	3	67	40	0	0	60	0.97
55435519--55435570	22	2.4	21	75	15	52	26	13	7	51	1.67
55451710--55451749	16	2.6	16	92	7	66	60	0	0	40	0.97
55451710--55451749	7	5.4	7	88	11	62	60	0	0	40	0.97
55451710--55451750	8	5.4	8	91	2	59	60	0	0	39	0.96
55453145--55453206	25	2.5	25	79	7	65	70	0	1	27	0.96
55454084--55454135	27	1.9	27	96	0	95	34	7	23	34	1.83
55454294--55454402	36	3.0	36	97	0	200	39	10	11	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55460447--55460498	14	3.7	14	78	0	59	61	9	21	7	1.51
55464141--55464170	14	2.1	14	100	0	60	66	0	0	33	0.92
55465417--55465458	17	2.3	19	88	12	61	38	2	2	57	1.25
55465505--55465552	24	2.0	24	87	0	69	68	0	2	29	1.01
55466009--55466047	16	2.4	17	91	4	62	43	0	2	53	1.14
55469241--55469326	35	2.5	35	81	9	106	45	0	4	50	1.22
55469268--55469328	24	2.5	23	80	15	61	45	0	4	49	1.23
55495706--55495730	12	2.1	12	100	0	50	36	8	16	40	1.77
55499200--55499271	30	2.4	29	84	4	99	52	4	18	25	1.62
55499204--55499250	15	3.1	16	72	9	53	55	4	19	21	1.60
55499813--55499877	31	2.1	31	82	5	78	32	15	15	36	1.89
55501329--55501440	51	2.2	51	80	0	134	42	5	16	35	1.70
55502307--55502356	17	2.7	20	78	18	70	10	0	44	46	1.37
55506946--55506995	17	2.7	20	78	18	70	10	0	44	46	1.37
55515700--55515733	14	2.5	14	95	4	61	14	0	35	50	1.44
55519969--55520024	21	2.7	21	91	0	94	25	8	37	28	1.86
55520193--55520343	30	5.2	30	88	3	213	37	10	1	50	1.45
55520524--55520561	6	6.2	6	93	6	67	15	47	0	36	1.46
55520524--55520561	19	2.0	19	100	0	76	15	47	0	36	1.46
55524700--55524783	31	2.7	31	81	1	98	28	13	14	44	1.82
55530733--55530790	26	2.3	26	81	3	73	36	13	1	48	1.53
55547463--55547522	25	2.4	24	75	8	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55547486--55547535	26	1.9	26	84	8	66	64	0	4	32	1.12
55553742--55553801	25	2.5	24	83	8	68	21	5	8	65	1.40
55557076--55557165	43	2.1	44	95	2	164	30	13	27	28	1.94
55557892--55557928	19	1.9	19	88	0	56	48	2	0	48	1.15
55560835--55560877	22	2.0	22	90	0	68	11	11	18	58	1.63
55570580--55570618	18	2.2	18	86	9	53	23	0	17	58	1.38
55587138--55587207	29	2.3	29	82	4	86	34	4	14	47	1.64
55587159--55587217	29	2.0	30	90	3	93	32	3	11	52	1.54
55587655--55587738	44	1.9	44	90	2	134	47	7	3	41	1.48
55591347--55591391	21	2.0	22	84	16	58	35	4	2	57	1.31
55594346--55594506	88	1.8	88	100	0	322	45	18	12	23	1.83
55599076--55599127	11	4.6	11	78	4	59	30	1	34	32	1.69
55599306--55599359	18	3.1	18	70	17	51	57	0	0	42	0.98
55599663--55599707	19	2.4	18	85	10	56	42	0	0	57	0.98
55600654--55600713	31	1.9	31	83	6	77	30	13	11	45	1.79
55602251--55602639	31	12.8	30	86	3	466	30	9	17	43	1.80
55602251--55602639	61	6.4	61	89	1	546	30	9	17	43	1.80
55602251--55602639	92	4.2	92	90	1	559	30	9	17	43	1.80
55603983--55604019	19	1.9	19	89	10	58	51	0	0	48	1.00
55604030--55604071	20	2.2	19	86	4	57	42	0	9	47	1.36
55611810--55611834	7	3.6	7	100	0	50	44	16	12	28	1.83
55617677--55617735	17	3.3	18	76	23	52	33	0	1	64	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55617677--55617735	9	6.6	9	73	21	52	33	0	1	64	1.04
55618165--55618195	2	15.5	2	100	0	62	48	0	0	51	1.00
55618879--55618943	31	2.1	31	100	0	130	41	9	9	40	1.69
55620940--55621006	31	2.2	31	83	5	82	31	17	25	25	1.97
55639036--55639079	19	2.3	19	84	4	52	29	13	13	43	1.83
55645745--55645831	29	2.9	31	70	13	81	20	10	17	51	1.74
55645929--55646077	58	2.6	57	80	7	153	44	16	16	22	1.85
55653834--55653882	25	2.0	25	84	8	64	51	2	24	22	1.59
55653834--55653883	26	2.0	25	84	4	64	52	2	24	22	1.58
55659336--55659365	13	2.4	13	94	5	53	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182