genome.fa.s21.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  77  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23341526--23341578	21	2.5	21	93	0	88	30	39	9	20	1.84
23342170--23342203	10	3.4	10	87	0	50	47	8	0	44	1.34
23354866--23354926	25	2.5	26	79	15	67	39	6	3	50	1.45
23357584--23357629	20	2.3	20	84	0	65	45	15	13	26	1.82
23367046--23367094	24	2.0	24	84	0	62	67	14	6	12	1.40
23369984--23370008	3	8.3	3	100	0	50	68	0	32	0	0.90
23370488--23370532	22	2.0	22	83	8	56	42	2	4	51	1.34
23382996--23383129	54	2.5	54	93	2	225	17	35	20	26	1.95
23382996--23383158	54	3.0	54	87	3	159	18	35	19	26	1.95
23383825--23383881	29	2.0	29	82	6	71	36	1	7	54	1.38
23386538--23386601	31	2.1	30	85	2	83	46	1	18	32	1.59
23386934--23386972	16	2.6	15	88	11	62	53	0	0	46	1.00
23386962--23386998	11	3.5	11	78	14	51	59	0	0	40	0.97
23386944--23386998	20	3.0	19	87	10	71	58	0	0	41	0.98
23389148--23389181	14	2.4	14	90	9	52	8	17	5	67	1.37
23389972--23390212	44	5.4	45	73	3	166	27	19	19	33	1.96
23390571--23390791	89	2.5	89	81	3	250	23	22	24	28	1.99
23390753--23391660	45	20.0	45	84	3	1160	28	24	17	29	1.97
23393723--23393756	14	2.4	14	90	9	52	8	17	5	67	1.37
23396646--23396699	21	2.6	21	81	0	72	24	1	37	37	1.66
23399898--23399941	23	2.0	22	82	8	54	43	2	2	52	1.26
23401665--23401694	3	10.0	3	100	0	60	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23407460--23407510	24	2.0	26	85	14	72	31	13	0	54	1.39
23407554--23407591	16	2.4	16	90	0	58	36	2	28	31	1.71
23407825--23407941	18	7.0	17	64	21	59	56	3	0	39	1.22
23407841--23408078	120	2.0	119	97	0	449	50	5	2	42	1.36
23407863--23408051	59	3.2	58	72	14	195	52	4	1	41	1.30
23407842--23408117	120	2.3	119	88	3	355	51	4	2	40	1.38
23408227--23408302	27	2.8	27	88	4	100	31	22	26	19	1.98
23408401--23408470	19	3.8	18	79	11	79	37	8	0	54	1.31
23408406--23408476	37	1.9	37	97	0	133	39	9	0	50	1.36
23408694--23408763	19	3.7	19	82	3	97	37	10	0	52	1.35
23408699--23408769	37	1.9	37	97	0	133	40	9	0	49	1.36
23409035--23409107	18	4.1	18	87	7	105	53	0	8	38	1.31
23409035--23409108	35	2.1	36	92	5	123	54	0	8	37	1.30
23409327--23409397	37	1.9	37	100	0	142	49	0	11	39	1.39
23409333--23409401	19	3.7	19	82	5	97	52	0	10	37	1.36
23408787--23409761	292	3.3	294	93	3	1582	44	9	14	32	1.76
23409511--23409542	15	2.1	15	100	0	64	43	6	12	37	1.68
23409641--23409709	19	3.7	19	78	5	79	52	0	10	37	1.36
23409635--23409705	37	1.9	37	91	0	115	49	0	9	40	1.36
23409650--23409711	18	3.4	18	76	12	63	56	0	11	32	1.35
23409678--23409719	19	2.2	19	86	4	57	59	0	7	33	1.25
23409784--23409834	27	1.9	27	92	4	86	19	31	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23409891--23409935	23	2.0	23	95	0	81	55	2	6	35	1.38
23423781--23423835	21	2.6	21	82	0	74	30	9	30	29	1.88
23424581--23424806	113	2.0	113	96	0	416	45	12	10	31	1.76
23424966--23425191	113	2.0	113	96	0	416	45	12	10	31	1.76
23424543--23425267	385	1.9	385	100	0	1450	37	14	13	34	1.85
23434099--23434216	44	2.7	44	80	6	123	37	15	22	24	1.93
23434436--23434508	27	2.7	27	82	0	74	38	13	21	26	1.91
23437678--23437795	44	2.7	44	80	6	123	37	15	22	24	1.93
23438015--23438087	27	2.7	27	82	0	74	38	13	21	26	1.91
23439796--23439960	87	1.9	86	86	3	233	35	22	16	25	1.94
23443825--23444103	90	3.1	90	90	0	423	31	8	13	46	1.74
23443885--23444026	46	3.1	46	64	25	111	30	8	13	47	1.72
23447468--23447567	40	2.5	40	90	0	155	10	16	30	44	1.80
23449994--23450034	10	3.8	11	81	15	50	9	26	12	51	1.70
23455275--23455322	20	2.5	18	75	15	51	50	2	2	45	1.25
23488236--23488809	88	6.5	88	89	0	806	29	25	24	20	1.99
23488375--23488517	44	3.2	44	71	3	135	24	24	25	25	2.00
23488817--23488934	44	2.7	44	85	6	150	26	23	27	22	2.00
23488902--23489022	44	2.8	44	78	7	131	31	18	19	30	1.96
23489175--23489285	44	2.5	44	83	2	134	32	22	16	28	1.95
23489304--23489510	45	4.7	43	81	2	189	30	19	23	26	1.98
23489308--23489509	89	2.3	89	81	6	223	31	19	23	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23490216--23490241	5	5.2	5	100	0	52	80	0	0	19	0.71
23504295--23504352	13	3.5	17	69	23	52	36	17	3	43	1.66
23504682--23504733	25	2.1	24	89	3	77	38	21	23	17	1.93
23512146--23512253	37	2.9	38	77	18	106	40	3	3	51	1.37
23513578--23513638	23	2.7	23	85	10	72	21	18	22	37	1.94
23513585--23513674	23	3.9	23	75	5	83	21	18	20	40	1.92
23518367--23518496	41	3.2	41	79	0	152	21	23	26	29	1.99
23519555--23519596	21	2.0	21	85	0	57	23	19	35	21	1.96
23525907--23525936	12	2.5	12	94	0	51	0	10	16	73	1.09
23526874--23526918	20	2.2	20	92	0	72	46	26	0	26	1.53
23527716--23527828	40	2.8	41	86	4	149	36	17	0	45	1.55
23527721--23527826	13	7.9	13	76	12	90	37	17	0	43	1.56
23527718--23527857	28	5.1	28	77	12	105	36	16	2	45	1.60
23527718--23527831	41	2.8	40	85	7	151	35	16	0	46	1.54
23529327--23529393	35	1.9	35	81	6	82	22	17	8	50	1.74
23529413--23529522	45	2.4	45	81	3	114	22	22	15	39	1.92
23529427--23529526	45	2.2	45	83	0	128	21	23	17	39	1.92
23530291--23530322	15	2.1	15	94	0	55	12	0	9	78	0.97
23531019--23531073	27	2.0	27	100	0	110	41	18	0	40	1.50
23533827--23533884	22	2.6	23	81	13	75	72	1	5	20	1.13
23533867--23533891	8	3.1	8	100	0	50	76	0	0	24	0.80
23538949--23539030	26	3.2	26	77	5	78	15	24	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23541588--23541699	41	2.7	40	78	9	109	27	24	18	29	1.98
23541916--23542430	184	2.8	184	88	0	744	43	19	8	28	1.79
23542033--23542320	91	3.1	91	68	9	260	43	19	9	28	1.81
23542099--23542371	31	8.9	30	68	11	115	43	19	8	27	1.80
23550277--23550319	23	2.0	22	86	9	61	53	9	4	32	1.53
23554398--23554422	13	1.9	13	100	0	50	72	4	0	24	1.02
23555170--23555213	20	2.2	20	95	0	79	9	18	6	65	1.42
23566197--23566234	18	2.1	18	90	0	58	26	23	31	18	1.97
23574129--23574166	18	2.2	17	86	9	51	23	7	0	68	1.16
23580407--23580439	3	11.0	3	100	0	66	33	0	0	66	0.92
23580774--23580827	25	2.1	26	86	3	74	70	3	16	9	1.28
23580916--23580942	12	2.2	12	100	0	54	48	7	0	44	1.31
23580980--23581055	39	1.9	39	91	0	125	28	17	21	32	1.95
23581391--23581430	21	2.0	20	85	5	53	22	15	15	47	1.82
23583139--23583174	18	2.0	18	100	0	72	27	16	27	27	1.97
23585960--23586026	26	2.7	25	77	15	68	14	19	22	43	1.87
23590530--23590573	21	2.2	20	83	4	52	61	4	0	34	1.16
23590559--23590589	14	2.2	14	100	0	62	67	0	0	32	0.91
23591212--23591263	24	2.2	24	85	0	68	53	9	3	32	1.51
23603950--23604076	36	3.6	35	71	10	96	21	22	21	35	1.96
23604057--23604164	36	2.9	37	81	6	119	21	19	25	34	1.96
23604026--23604202	36	4.8	36	72	10	108	22	22	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23605731--23605773	21	2.2	19	83	8	50	55	0	6	37	1.27
23606282--23606576	95	3.1	95	78	3	308	26	16	20	35	1.94
23612487--23612518	15	2.1	16	88	11	50	21	3	21	53	1.60
23614642--23614696	28	2.0	28	96	0	101	34	7	23	34	1.83
23615483--23615527	11	4.1	11	88	0	72	20	33	2	44	1.63
23615483--23615543	22	2.8	22	87	5	79	22	32	1	42	1.64
23615483--23615545	33	1.9	33	87	12	94	23	31	1	42	1.64
23615505--23615604	51	2.0	51	86	7	141	26	27	2	45	1.65
23616741--23616773	7	4.7	7	100	0	66	27	0	15	57	1.38
23619653--23619795	38	3.7	39	91	5	227	65	0	2	32	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182