genome.fa.s21.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  60  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18519611--18520228	108	5.7	108	92	1	997	33	18	17	29	1.95
18522944--18522989	17	2.8	18	84	15	64	28	41	30	0	1.56
18529557--18529625	5	13.8	5	77	15	63	81	0	17	1	0.77
18529559--18529624	27	2.4	27	80	16	75	80	0	18	1	0.79
18529557--18529627	31	2.3	30	84	15	92	80	0	18	1	0.79
18530925--18531073	44	3.4	43	79	5	131	28	19	24	26	1.99
18531653--18531802	44	3.4	44	77	10	155	30	16	25	28	1.97
18531636--18531805	44	3.9	44	78	5	148	28	18	24	28	1.98
18532251--18532290	19	2.1	19	85	0	53	37	47	10	5	1.59
18532622--18532662	12	3.2	13	83	12	50	80	2	9	7	0.99
18534225--18534453	102	2.2	103	90	1	361	22	17	27	32	1.96
18534356--18534525	76	2.2	76	90	2	261	22	16	27	33	1.95
18534356--18534568	76	2.8	75	85	4	259	22	18	26	32	1.97
18538532--18538576	23	2.0	22	82	4	54	40	6	17	35	1.76
18538967--18539015	23	2.2	22	82	10	55	36	2	0	61	1.08
18539492--18539518	3	9.0	3	100	0	54	33	0	0	66	0.92
18544856--18544889	9	4.0	9	85	14	54	55	11	0	32	1.36
18544856--18544892	16	2.3	16	95	0	65	54	10	0	35	1.36
18544962--18545003	16	2.6	16	92	0	66	42	7	2	47	1.43
18544977--18545032	23	2.5	23	82	2	69	44	1	1	51	1.22
18545969--18546074	53	2.0	53	98	0	203	34	11	17	35	1.86
18546230--18546459	102	2.2	103	89	1	345	21	19	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18546361--18546573	76	2.8	76	79	1	248	21	18	25	34	1.96
18548843--18548867	4	6.2	4	100	0	50	24	0	0	76	0.80
18550291--18550323	14	2.4	14	90	5	50	45	3	3	48	1.33
18550414--18550508	44	2.2	44	98	0	181	41	10	24	24	1.86
18560336--18560420	35	2.7	31	83	10	102	25	18	15	40	1.90
18569038--18569076	20	1.9	21	84	5	53	58	7	2	30	1.39
18574286--18574353	5	13.6	5	74	0	55	35	22	8	33	1.85
18574286--18574353	30	2.3	30	89	0	100	35	22	8	33	1.85
18580803--18580855	21	2.5	21	79	11	63	11	15	43	30	1.81
18580894--18580920	12	2.2	12	100	0	54	14	29	25	29	1.95
18583455--18583525	35	2.0	35	91	0	115	33	23	5	36	1.79
18588581--18588651	35	2.0	35	91	0	115	29	26	7	36	1.83
18600596--18600638	17	2.5	17	88	7	61	13	23	34	27	1.93
18600663--18600696	17	2.0	17	94	0	59	11	14	35	38	1.83
18616046--18616089	7	6.3	7	89	0	70	40	27	0	31	1.56
18621867--18621909	15	2.8	15	78	3	50	18	32	0	48	1.48
18621991--18622031	19	2.0	21	86	9	59	14	29	2	53	1.54
18628777--18628886	50	2.2	50	90	1	168	30	10	29	30	1.91
18629067--18629245	39	4.6	39	83	4	209	31	5	20	41	1.75
18633981--18634067	42	2.1	40	93	4	147	21	21	18	37	1.94
18637885--18637914	15	2.0	15	100	0	60	80	0	20	0	0.72
18637901--18638262	106	3.4	105	84	5	492	39	14	16	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18638470--18638844	107	3.4	109	83	9	473	29	17	14	38	1.90
18638470--18638844	108	3.4	107	84	7	463	29	17	14	38	1.90
18638830--18638862	17	1.9	17	100	0	66	0	18	0	81	0.68
18640866--18640917	18	2.9	17	83	13	61	65	3	0	30	1.10
18640856--18640931	36	2.1	37	87	2	109	68	2	0	28	1.03
18642261--18642585	106	3.1	106	91	1	508	36	12	12	38	1.81
18643837--18643877	11	3.7	11	90	0	64	24	19	2	53	1.57
18646704--18646827	62	2.0	62	95	0	221	38	19	7	34	1.79
18651357--18651381	11	2.3	11	100	0	50	76	16	0	8	1.02
18652663--18652687	12	2.1	12	100	0	50	40	16	0	44	1.47
18653478--18653528	21	2.5	20	76	14	59	29	1	1	66	1.13
18654232--18654374	71	2.0	71	88	0	214	34	23	23	17	1.96
18657108--18657148	18	2.2	19	83	12	50	17	2	4	75	1.08
18658979--18659014	16	2.2	17	95	5	65	69	0	0	30	0.89
18660781--18660819	20	2.1	19	85	9	53	69	7	0	23	1.14
18662047--18662098	15	3.5	15	78	0	50	48	5	1	44	1.38
18668989--18669069	42	1.9	43	84	2	110	32	16	19	32	1.94
18668984--18669078	42	2.2	42	79	1	109	31	17	20	30	1.96
18672212--18672286	36	2.1	37	97	2	143	46	9	13	30	1.74
18672212--18672269	12	4.8	12	78	18	66	46	8	13	31	1.74
18673208--18673599	195	2.0	194	93	0	676	31	19	14	34	1.92
18676380--18676494	54	2.1	55	96	1	214	29	17	12	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18677704--18677756	7	7.4	7	89	10	81	13	15	0	71	1.14
18678641--18678716	6	12.7	6	80	5	55	10	9	10	69	1.36
18678660--18678723	30	2.1	30	88	0	92	7	6	12	73	1.24
18686959--18686996	19	2.0	20	89	5	60	52	5	0	42	1.24
18686934--18687068	59	2.3	59	96	0	243	45	2	5	45	1.43
18690594--18690665	18	4.0	18	94	0	126	26	23	18	31	1.97
18691585--18691678	47	2.0	47	87	0	134	22	8	27	41	1.83
18691711--18691842	67	2.0	67	89	3	203	31	24	20	24	1.98
18692889--18693033	72	2.0	72	94	0	254	40	16	22	21	1.92
18693179--18693274	49	2.0	49	97	0	183	21	21	21	34	1.97
18693306--18693432	63	2.0	63	96	0	236	38	11	27	22	1.89
18695578--18695634	18	3.2	18	94	0	96	26	26	17	29	1.97
18701513--18701544	13	2.6	13	90	9	50	68	9	3	18	1.30
18701508--18701544	11	3.2	12	85	14	51	67	8	2	21	1.29
18706349--18706391	3	14.3	3	85	9	61	34	2	0	62	1.08
18706536--18706585	26	1.9	26	87	0	73	34	14	0	52	1.42
18706932--18706973	19	2.2	20	82	4	50	30	2	16	50	1.58
18708586--18708630	19	2.3	20	75	20	51	26	22	8	42	1.83
18711413--18711442	7	4.3	7	100	0	60	86	0	13	0	0.57
18712801--18713775	89	11.0	89	91	1	1431	30	17	24	27	1.97
18714009--18714200	44	4.4	44	66	10	104	28	20	23	27	1.99
18714008--18714285	132	2.1	132	84	1	351	30	20	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18717491--18717667	84	2.1	84	96	2	331	38	18	10	32	1.84
18717639--18717703	32	2.1	32	94	2	114	46	12	9	32	1.73
18721036--18721159	31	4.0	31	100	0	248	32	9	16	41	1.80
18726603--18726637	15	2.4	15	95	4	63	0	25	0	74	0.82
18728149--18728176	6	4.7	6	100	0	56	17	17	32	32	1.94
18739749--18739781	16	2.1	16	94	0	57	39	6	33	21	1.78
18744449--18744598	49	3.0	49	79	7	167	34	25	15	24	1.94
18746212--18746240	8	3.6	8	100	0	58	24	0	0	75	0.80
18754877--18754969	45	2.1	45	100	0	186	50	4	6	38	1.48
18762968--18762995	6	4.7	6	100	0	56	53	28	17	0	1.44
18764500--18764543	21	2.2	20	83	4	52	47	31	2	18	1.61
18764548--18764577	11	2.8	11	95	5	53	70	0	0	30	0.88
18764548--18764593	9	5.0	9	82	17	51	67	0	0	32	0.91
18784167--18784270	49	2.1	49	85	3	138	29	5	13	50	1.64
18799568--18799667	44	2.3	44	91	0	155	36	5	18	41	1.72
18801683--18801712	2	15.5	2	93	6	53	50	0	0	50	1.00
18804199--18804223	13	1.9	13	100	0	50	44	0	0	56	0.99
18805764--18805798	6	5.8	6	86	0	52	57	31	11	0	1.34
18805995--18806034	21	1.9	21	90	10	64	42	40	10	7	1.67
18811948--18812103	3	52.0	3	100	0	312	33	0	0	66	0.92
18814357--18814664	109	2.8	109	90	2	465	33	19	16	30	1.94
18815558--18815597	12	3.2	12	89	3	53	60	2	5	32	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18818889--18818946	28	2.1	27	87	3	80	63	3	5	27	1.31
18822749--18822807	28	2.1	28	80	0	64	49	8	23	18	1.75
18824529--18824571	19	2.3	18	84	11	59	46	6	0	46	1.30
18824529--18824572	20	2.2	20	88	11	65	47	6	0	45	1.29
18825378--18825427	20	2.5	20	70	3	57	62	0	4	34	1.14
18825539--18825606	28	2.4	29	82	7	86	29	2	0	67	1.05
18825539--18825624	29	3.0	28	79	12	79	32	2	0	65	1.06
18825547--18825643	9	10.8	9	71	12	74	35	2	0	62	1.07
18826184--18826217	16	2.0	18	88	11	54	58	0	0	41	0.98
18826982--18827907	301	3.1	297	87	5	1252	30	9	7	53	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182