genome.fa.s21.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  137  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42132868--42132942	35	2.2	34	82	2	87	33	25	18	22	1.97
42135397--42135670	137	2.0	137	97	0	512	25	17	16	39	1.91
42138389--42138459	25	2.8	25	85	4	99	25	19	22	32	1.98
42139591--42139620	12	2.5	12	94	0	51	23	40	30	6	1.80
42140947--42141174	104	2.2	103	92	0	366	21	19	29	29	1.97
42149649--42149690	21	2.0	20	82	13	50	28	7	9	54	1.59
42154490--42154549	29	2.1	29	100	0	120	23	28	3	45	1.69
42158013--42158300	43	6.7	43	77	8	266	25	17	26	30	1.97
42158015--42158300	129	2.2	129	100	0	572	25	17	26	30	1.97
42165083--42165211	52	2.5	52	86	3	181	28	29	14	27	1.95
42165517--42165555	16	2.4	16	95	0	69	51	10	5	33	1.58
42165518--42165563	16	2.9	16	90	0	56	47	8	4	39	1.54
42168025--42168142	40	3.0	39	80	7	150	38	20	18	22	1.94
42168025--42168162	40	3.5	39	79	7	145	40	21	18	20	1.91
42168202--42168442	41	5.9	41	88	0	358	21	20	28	29	1.98
42168202--42168439	122	1.9	123	88	2	363	21	20	28	29	1.98
42169397--42169441	14	3.1	15	84	9	58	20	0	46	33	1.51
42169400--42169439	21	1.9	21	90	10	64	15	0	52	32	1.43
42169765--42169794	16	1.9	16	93	6	53	66	13	6	13	1.43
42173882--42174088	87	2.4	87	86	2	274	21	15	34	28	1.94
42173882--42174088	43	4.8	43	87	2	263	21	15	34	28	1.94
42175278--42175318	22	1.9	22	95	5	75	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42175307--42175409	11	9.9	11	67	26	55	58	0	2	38	1.13
42175291--42175418	42	3.1	40	92	4	193	60	0	2	36	1.09
42175334--42175398	30	2.1	30	86	13	89	61	0	3	35	1.12
42175307--42175420	42	2.8	41	93	2	194	59	0	2	37	1.11
42175307--42175435	42	3.1	41	88	4	188	60	0	2	37	1.10
42176338--42176495	79	2.0	79	93	0	271	25	20	12	40	1.88
42183340--42183429	21	4.3	21	87	8	130	1	50	20	28	1.55
42183843--42183871	14	2.1	14	93	6	51	58	6	0	34	1.25
42184038--42184076	17	2.4	16	86	4	51	51	0	12	35	1.40
42184263--42184375	9	12.8	9	68	17	51	33	1	20	44	1.62
42184284--42184352	36	1.9	36	90	0	111	36	1	17	44	1.58
42184310--42184418	43	2.5	43	86	0	155	34	0	18	46	1.49
42184334--42184499	56	3.0	55	80	13	198	34	0	14	51	1.43
42184277--42184442	43	3.8	44	77	8	144	34	0	16	47	1.52
42184424--42184458	13	2.6	13	95	4	61	37	0	8	54	1.31
42184530--42184575	12	3.5	12	81	18	56	65	0	0	34	0.93
42188499--42188549	16	3.3	15	76	15	50	17	3	3	74	1.12
42188591--42188626	13	2.6	14	91	8	65	52	5	0	41	1.24
42188828--42188897	36	1.9	36	82	5	88	45	28	0	25	1.54
42189267--42189308	17	2.4	18	80	8	50	59	2	0	38	1.10
42189558--42189661	39	2.6	39	73	13	97	26	24	17	31	1.97
42197454--42197486	13	2.5	13	86	13	50	57	6	0	36	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42199558--42199713	54	2.9	53	85	3	197	33	17	25	23	1.96
42201092--42201297	64	3.2	64	81	7	238	22	30	16	31	1.96
42201733--42201769	20	1.9	18	89	10	56	43	0	21	35	1.53
42216365--42216528	82	2.0	82	100	0	328	29	12	28	30	1.93
42221188--42221225	17	2.2	17	100	0	76	21	23	0	55	1.44
42222061--42222131	37	1.9	37	97	0	133	38	2	22	36	1.69
42222495--42222527	17	1.9	17	88	11	50	24	3	3	69	1.16
42232407--42232435	3	9.7	3	100	0	58	34	0	0	65	0.93
42233327--42233357	15	2.1	15	100	0	62	32	6	6	54	1.51
42234043--42234090	17	2.7	18	80	6	53	45	0	0	54	0.99
42234034--42234084	17	3.0	17	77	11	52	49	0	0	50	1.00
42235593--42235863	18	14.6	18	70	11	145	36	15	12	34	1.86
42235593--42235863	36	7.3	36	70	12	172	36	15	12	34	1.86
42235672--42235863	54	3.6	54	77	8	176	37	15	13	34	1.86
42235674--42235875	72	2.8	71	80	6	210	38	14	12	35	1.84
42235673--42235863	18	10.6	18	74	10	149	37	15	12	34	1.85
42236051--42236290	45	5.3	45	92	0	345	42	22	17	17	1.90
42236699--42236740	5	8.2	5	89	5	57	38	23	0	38	1.55
42240582--42240651	30	2.3	32	80	9	83	47	4	15	32	1.65
42240887--42240911	8	3.1	8	100	0	50	24	0	0	76	0.80
42242145--42242317	43	4.0	43	79	15	205	31	27	18	23	1.97
42242145--42242303	44	3.7	43	80	16	195	30	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42247258--42247308	15	3.6	15	74	15	63	9	11	45	33	1.74
42247258--42247338	27	3.1	27	89	5	114	11	11	41	35	1.76
42247234--42247386	24	6.2	24	81	6	128	9	15	39	35	1.79
42249450--42249515	20	3.0	20	70	18	60	51	0	10	37	1.37
42249754--42249795	16	2.4	18	76	11	52	47	2	0	50	1.14
42251664--42251722	30	2.0	30	83	6	75	18	42	0	38	1.51
42256858--42256949	47	1.9	48	91	2	150	31	6	29	32	1.83
42258609--42258808	89	2.3	87	81	9	221	27	5	11	56	1.55
42261451--42261514	22	3.1	20	79	16	60	28	18	0	53	1.45
42261463--42261505	11	3.8	12	78	9	54	30	18	0	51	1.47
42261529--42261588	21	3.0	19	83	11	75	21	10	0	68	1.19
42261529--42261583	20	2.7	20	88	2	74	23	10	0	65	1.24
42261559--42261597	16	2.5	15	84	12	51	25	10	0	64	1.25
42261609--42261652	16	2.5	18	85	10	56	20	11	4	63	1.44
42261665--42261704	5	7.4	5	84	15	53	25	17	0	57	1.40
42261682--42261730	15	3.1	16	82	11	57	28	10	0	61	1.29
42261658--42261731	16	4.6	16	70	11	62	27	10	0	62	1.28
42261709--42261763	19	2.8	19	78	21	60	23	7	1	67	1.26
42261900--42261953	25	2.1	26	86	3	74	38	5	0	55	1.23
42262109--42262146	19	2.0	19	94	0	67	18	21	0	60	1.36
42262116--42262176	29	2.1	29	84	6	79	14	18	0	67	1.24
42262132--42262164	16	2.1	16	88	11	50	12	12	0	75	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42262131--42262176	6	7.7	6	81	16	51	15	15	0	69	1.19
42262131--42262176	13	3.8	12	83	16	51	15	15	0	69	1.19
42262131--42262186	29	1.9	29	88	0	85	17	14	0	67	1.22
42262130--42262192	29	2.2	29	82	0	81	22	12	0	65	1.26
42262189--42262278	22	4.1	21	80	9	90	26	7	0	65	1.19
42262190--42262418	21	10.4	21	74	18	125	23	12	0	63	1.31
42262178--42262372	45	4.3	46	72	16	138	26	11	0	62	1.33
42262345--42262418	38	2.0	37	94	2	130	20	13	0	66	1.25
42262388--42262435	20	2.2	22	78	14	55	16	8	2	72	1.18
42262429--42262471	18	2.4	18	88	3	61	32	13	0	53	1.41
42262889--42262979	44	2.1	44	95	2	166	37	0	9	52	1.35
42266233--42266294	21	3.0	21	81	4	74	43	16	22	17	1.87
42268473--42268685	54	3.9	54	89	3	277	43	20	13	23	1.86
42268680--42268790	53	2.1	54	84	1	143	40	17	21	20	1.91
42270241--42270283	13	3.3	13	83	9	52	72	0	11	16	1.13
42270237--42270283	17	2.7	18	86	6	69	72	0	10	17	1.12
42270249--42270283	9	4.0	9	88	7	54	71	0	11	17	1.14
42272859--42273034	46	3.8	46	79	12	216	20	21	29	28	1.98
42272856--42273027	93	1.8	93	96	0	317	20	21	29	27	1.98
42277896--42277933	15	2.5	15	95	0	67	42	0	7	50	1.31
42278183--42278266	27	3.1	27	85	0	105	17	22	30	28	1.97
42278947--42279133	94	2.0	94	95	0	338	32	16	25	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42287966--42288027	29	2.2	28	88	5	90	24	35	22	17	1.95
42287982--42288050	27	2.5	28	85	4	86	26	30	24	18	1.98
42288760--42288815	22	2.5	22	85	11	69	35	1	0	62	1.06
42288999--42289058	23	2.6	23	84	10	86	53	0	3	43	1.17
42289056--42289095	19	2.1	19	85	4	53	72	0	15	12	1.12
42290710--42290971	125	2.1	127	82	3	323	34	17	14	33	1.90
42291134--42291604	3	153.3	3	66	16	67	59	2	9	28	1.45
42291138--42291229	35	2.5	38	73	22	90	58	0	8	32	1.28
42292367--42292590	45	5.0	45	69	11	138	27	20	18	33	1.96
42292216--42292590	89	4.2	88	73	8	271	27	20	21	31	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182