genome.fa.s21.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  38  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12184900--12184952	27	2.0	27	85	7	72	83	0	13	3	0.79
12185902--12186772	84	10.4	84	89	4	1334	29	22	22	24	1.99
12185902--12186772	334	2.6	331	91	3	1324	29	22	22	24	1.99
12185901--12186772	418	2.1	419	93	1	1489	29	22	22	24	1.99
12186580--12186713	41	3.2	41	68	21	107	32	20	20	26	1.97
12187431--12187528	19	5.2	19	91	7	155	38	10	16	34	1.82
12187437--12187528	36	2.4	36	92	7	130	38	10	15	35	1.82
12187450--12187506	17	3.5	15	84	15	53	38	10	15	35	1.82
12191081--12191156	23	3.3	23	73	12	68	32	5	3	57	1.39
12191315--12191434	3	39.7	3	75	5	89	32	9	1	56	1.41
12191374--12191439	23	2.9	22	78	17	64	34	13	1	50	1.51
12191546--12191583	18	2.1	18	90	0	58	36	10	0	52	1.36
12206980--12207043	17	3.6	18	89	8	96	35	12	12	39	1.81
12206980--12207051	35	2.0	37	91	8	121	37	13	11	37	1.81
12207453--12208122	207	3.2	207	92	0	1072	29	22	17	30	1.97
12209040--12209153	17	6.3	18	88	5	169	36	15	10	36	1.82
12209040--12209145	35	3.0	35	97	1	194	36	15	11	36	1.83
12209554--12210262	207	3.4	207	92	0	1123	29	22	17	30	1.97
12210435--12210668	43	5.5	42	64	21	110	22	20	23	32	1.98
12210391--12210677	87	3.4	83	83	8	364	22	20	24	32	1.98
12211623--12211665	8	5.6	8	78	10	54	0	13	0	86	0.58
12211624--12211667	21	2.2	20	92	8	72	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12217026--12217089	28	2.3	26	82	15	67	59	3	4	32	1.34
12217408--12217498	19	4.9	19	88	8	143	36	15	10	37	1.83
12217408--12217498	35	2.5	37	89	8	141	36	15	10	37	1.83
12217422--12217477	17	3.5	15	88	9	60	35	16	10	37	1.83
12220048--12220112	28	2.4	27	94	2	112	13	38	0	47	1.43
12220231--12220407	59	3.0	59	100	0	354	37	13	28	20	1.91
12222346--12222525	20	9.2	20	86	6	181	37	27	21	14	1.92
12222345--12222525	39	4.7	39	84	4	215	37	27	20	14	1.92
12222346--12222525	59	3.1	59	87	3	240	37	27	21	14	1.92
12222794--12222847	27	2.0	28	85	7	76	31	18	20	29	1.96
12226398--12226427	14	2.1	14	93	0	51	46	36	0	16	1.47
12226427--12226471	23	2.0	23	81	0	54	42	11	4	42	1.60
12232310--12232339	16	1.9	15	93	6	51	60	0	0	40	0.97
12232317--12232366	22	2.3	20	86	10	64	68	2	0	30	1.01
12232574--12232606	17	2.0	17	88	5	50	36	0	3	60	1.12
12232544--12232606	16	3.8	17	72	16	51	39	1	3	55	1.25
12243074--12243105	6	5.3	6	100	0	64	53	15	0	31	1.43
12243910--12244033	43	2.9	42	76	2	122	36	20	20	22	1.95
12244140--12244213	34	2.2	34	82	0	85	48	14	9	27	1.75
12244160--12244236	34	2.3	35	77	6	86	42	14	11	31	1.81
12249269--12249310	16	2.5	17	76	3	50	42	2	2	52	1.27
12250094--12250129	18	2.0	18	89	10	56	30	0	2	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12256256--12256329	34	2.2	34	90	0	112	39	32	6	21	1.80
12257017--12257059	15	2.8	15	78	3	50	48	4	11	34	1.60
12258133--12258189	17	3.2	17	72	7	51	57	0	3	38	1.16
12269036--12269242	53	3.5	53	68	24	155	25	14	20	39	1.91
12268949--12269314	125	3.0	125	92	3	581	24	14	22	38	1.91
12269189--12269428	72	3.3	72	80	8	279	24	17	22	36	1.95
12269442--12269834	76	5.0	75	74	12	284	28	19	21	30	1.98
12269283--12269754	166	2.8	166	92	1	748	27	20	21	30	1.98
12269503--12269754	78	2.9	90	81	9	276	27	19	20	31	1.97
12269588--12269840	78	3.3	78	89	3	377	28	18	19	32	1.96
12269207--12269967	412	1.9	405	88	4	1141	27	19	21	31	1.97
12269820--12269846	14	1.9	14	100	0	54	14	14	7	62	1.51
12269821--12269854	14	2.4	14	90	0	50	17	20	5	55	1.62
12269422--12270215	246	3.2	245	87	3	1026	28	18	19	33	1.95
12269744--12269932	92	2.1	90	86	5	256	25	19	18	35	1.95
12269834--12270464	88	7.8	77	73	15	357	29	15	17	37	1.91
12269283--12270215	412	2.3	408	82	6	1100	28	18	20	33	1.96
12269422--12270463	246	4.2	244	83	5	1004	28	17	19	34	1.94
12270197--12270257	30	2.0	30	90	6	97	19	9	27	42	1.83
12277035--12277114	31	2.5	31	70	20	76	57	1	1	40	1.15
12278511--12278590	3	26.3	3	73	12	65	67	2	6	23	1.26
12278798--12278919	56	2.2	56	82	8	142	58	1	9	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12278753--12278921	3	55.7	3	70	13	105	59	1	7	31	1.36
12279065--12279109	23	1.9	23	90	4	72	60	0	11	28	1.31
12280782--12281150	43	8.5	44	78	2	212	20	24	20	33	1.97
12280826--12281203	87	4.4	87	83	2	510	21	23	20	33	1.97
12280870--12281200	43	7.7	43	74	6	292	22	22	20	33	1.97
12283130--12283369	30	7.8	30	81	11	290	26	47	3	22	1.67
12283109--12283369	93	2.8	94	89	7	376	26	46	3	23	1.67
12292752--12292841	43	2.1	44	95	2	164	34	18	26	20	1.96
12293125--12293301	72	2.5	71	83	2	205	28	14	23	33	1.94
12293305--12293508	80	2.8	72	82	10	218	29	14	20	35	1.92
12293662--12293803	72	2.0	73	91	4	234	22	15	23	38	1.92
12293795--12293994	73	2.8	71	83	2	247	31	14	21	33	1.93
12293795--12294023	73	3.1	73	78	8	225	30	15	20	33	1.94
12294014--12294044	14	2.3	14	94	5	55	16	12	6	64	1.47
12293867--12294344	162	3.0	161	83	7	579	27	16	21	34	1.95
12293654--12294383	235	3.2	225	82	10	795	28	16	21	33	1.95
12294029--12294383	75	4.8	73	85	6	462	28	16	21	33	1.95
12294028--12294383	151	2.4	147	85	6	457	28	16	21	33	1.95
12295095--12295232	30	4.6	30	93	0	240	22	48	3	25	1.67
12295529--12295576	16	3.1	15	90	6	69	31	2	2	64	1.16
12295529--12295580	8	6.5	8	82	8	61	30	1	1	65	1.14
12295945--12296334	195	2.0	195	97	0	744	36	19	14	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12305678--12306111	3	143.7	3	66	14	160	58	2	9	29	1.41
12306031--12306076	23	2.0	23	91	4	74	63	0	8	28	1.24
12306883--12306924	5	8.2	5	86	5	57	80	2	2	14	0.90
12306883--12306924	16	2.7	16	88	3	59	80	2	2	14	0.90
12308636--12308679	23	1.9	23	95	0	79	40	18	15	25	1.90
12311899--12311964	31	2.1	31	91	5	107	39	7	12	40	1.71
12316548--12316621	34	2.2	34	90	0	112	39	32	6	21	1.80
12317309--12317351	15	2.8	15	78	3	50	48	4	11	34	1.60
12318425--12318481	17	3.2	17	72	7	51	57	0	3	38	1.16
12328746--12328783	16	2.4	16	83	12	51	28	0	5	65	1.14
12331245--12331575	19	17.6	18	68	19	106	45	11	12	30	1.77
12331492--12331542	25	2.0	25	84	7	66	52	13	11	21	1.72
12331473--12331566	46	2.1	46	86	7	131	52	10	11	25	1.70
12331601--12331661	23	2.6	24	89	5	99	40	11	4	42	1.62
12331601--12331661	24	2.7	23	87	5	88	40	11	4	42	1.62
12332313--12332343	14	2.2	14	94	0	53	6	22	45	25	1.76
12332364--12332394	7	4.4	7	100	0	62	12	0	0	87	0.55
12332386--12332430	23	2.1	21	84	12	56	2	22	0	75	0.91
12332394--12332441	21	2.2	23	85	7	64	0	29	0	70	0.87
12332978--12333079	30	3.4	30	82	2	107	43	3	22	30	1.71
12333349--12333567	54	4.1	55	86	9	308	36	16	16	29	1.91
12333349--12333559	107	2.0	104	89	4	325	36	17	16	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12333546--12333580	14	2.5	14	90	0	52	60	2	17	20	1.49
12333668--12333915	91	2.8	87	82	8	297	36	18	18	26	1.94
12333828--12333861	16	2.1	16	88	0	50	64	5	11	17	1.45
12333880--12334271	71	5.5	71	99	0	757	31	17	13	37	1.88
12333880--12334465	213	2.8	213	86	7	802	32	18	13	35	1.90
12342263--12342379	30	3.9	29	77	11	94	44	3	22	29	1.69
12342278--12342379	30	3.4	30	84	2	134	44	3	22	29	1.71
12345352--12345402	26	2.0	26	96	0	93	17	11	23	47	1.81
12349713--12350695	120	8.2	120	99	0	1912	43	1	6	48	1.38
12350524--12350558	18	2.0	17	88	5	52	45	0	0	54	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182