genome.fa.s21.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  54  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16809775--16810166	201	2.0	200	87	5	576	41	26	2	29	1.69
16810553--16810670	41	2.9	41	93	0	191	28	31	18	21	1.97
16813101--16813155	22	2.4	23	85	8	69	36	5	12	45	1.66
16813983--16814087	37	2.8	38	77	5	99	38	15	17	29	1.90
16817584--16817702	36	3.3	35	90	4	175	15	12	30	42	1.84
16827297--16827333	9	4.1	9	92	0	65	45	13	10	29	1.77
16828247--16828282	5	7.2	5	87	0	54	22	16	16	44	1.86
16828504--16828561	22	2.7	21	86	7	80	34	3	18	43	1.68
16831394--16831456	31	2.0	31	100	0	126	22	22	12	42	1.87
16842397--16842541	77	1.9	77	97	0	272	35	16	6	40	1.75
16842693--16842790	28	3.5	28	76	6	108	45	17	18	18	1.85
16845211--16845251	21	2.0	21	90	0	64	14	19	21	43	1.87
16847485--16847526	21	1.9	23	85	9	61	28	35	0	35	1.58
16849647--16849722	9	8.4	9	85	0	98	27	9	21	42	1.83
16849647--16849715	27	2.6	27	92	0	111	26	10	23	40	1.86
16850070--16850129	19	3.1	19	72	13	59	38	3	0	58	1.15
16853087--16853125	20	2.0	20	100	0	78	41	12	5	41	1.65
16862918--16862945	12	2.3	12	100	0	56	50	17	0	32	1.47
16864045--16864088	23	1.9	23	90	0	70	15	15	29	38	1.89
16864050--16864097	23	2.1	23	84	7	62	16	18	29	35	1.93
16870877--16870908	14	2.3	14	94	0	55	84	0	15	0	0.63
16870977--16871051	29	2.6	28	81	14	82	26	13	12	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16871183--16871222	21	1.9	21	89	0	62	10	12	2	75	1.15
16891675--16891744	31	2.3	30	83	9	88	57	0	2	40	1.14
16891670--16891728	20	2.9	21	73	9	59	59	0	5	35	1.20
16893795--16893833	12	3.4	11	85	7	51	2	10	0	87	0.65
16893794--16893832	15	2.5	15	83	4	51	5	7	0	87	0.68
16893895--16893953	19	3.2	18	72	9	55	38	1	0	59	1.08
16893902--16893966	19	3.4	19	73	12	53	35	0	1	63	1.04
16893891--16893974	38	2.2	38	81	6	100	41	1	1	55	1.15
16894705--16894743	13	3.1	12	85	7	51	66	0	0	33	0.92
16894778--16894831	24	2.2	25	81	15	69	35	1	1	61	1.18
16900412--16900642	41	5.6	40	84	4	257	24	26	19	29	1.98
16900412--16900614	82	2.5	82	86	0	298	24	26	20	29	1.99
16900992--16901169	78	2.3	77	78	6	191	42	17	2	37	1.62
16901344--16901625	78	3.6	78	94	2	467	43	14	3	38	1.61
16901243--16901626	78	4.9	79	84	7	464	44	15	3	37	1.62
16901238--16901626	157	2.5	156	85	7	479	43	15	3	37	1.62
16904269--16904491	43	5.2	43	82	2	259	23	18	28	29	1.98
16910167--16910217	16	3.1	17	80	11	61	47	0	3	49	1.20
16910327--16910385	12	4.8	12	74	17	59	57	3	1	37	1.25
16914481--16914541	30	2.0	31	90	3	97	19	36	0	44	1.51
16917380--16917405	13	2.0	13	100	0	52	23	23	7	46	1.78
16917832--16917862	16	1.9	16	93	0	53	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16917948--16918012	28	2.2	29	76	12	71	35	1	3	60	1.22
16918614--16918678	16	3.9	17	76	6	62	47	30	1	20	1.59
16924070--16924130	26	2.3	26	78	18	72	32	0	1	65	1.02
16924606--16924864	132	2.0	129	87	7	371	49	5	6	38	1.52
16925233--16925606	185	2.0	185	91	0	604	27	13	16	43	1.85
16933099--16933158	20	3.0	20	90	0	93	46	13	6	33	1.69
16933089--16933185	40	2.4	40	81	10	117	46	12	6	35	1.67
16936318--16936367	21	2.4	22	80	12	61	14	20	4	62	1.47
16935688--16936509	413	2.0	406	90	3	1308	21	10	20	47	1.81
16947441--16947563	41	3.0	41	97	0	237	42	2	9	45	1.50
16951143--16951229	20	4.3	20	77	15	90	45	17	9	27	1.78
16951127--16951229	40	2.5	40	75	13	104	48	14	8	28	1.73
16958956--16959005	27	1.9	27	84	8	68	56	18	2	24	1.52
16959098--16959257	75	2.1	75	82	4	198	43	14	13	28	1.83
16963932--16963996	6	10.8	6	72	18	55	6	18	1	73	1.11
16963930--16963995	24	2.8	24	86	6	82	6	19	1	72	1.13
16965713--16965790	38	2.1	38	97	0	147	29	16	19	34	1.94
16970092--16970147	16	3.4	16	78	9	58	19	5	5	69	1.28
16971129--16971178	27	1.9	27	84	8	68	56	16	0	28	1.41
16972044--16973171	71	15.5	71	73	7	413	35	24	15	24	1.94
16972043--16972965	142	6.4	142	74	9	458	35	24	15	23	1.94
16972292--16972471	92	2.0	92	83	4	229	35	23	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16972411--16972535	64	2.0	64	85	3	171	37	25	14	22	1.92
16972475--16972965	213	2.3	213	83	0	588	36	25	14	23	1.93
16972942--16972986	21	2.1	21	95	0	81	24	26	15	33	1.95
16973203--16973271	16	4.3	16	94	0	120	39	5	33	21	1.77
16973251--16973341	46	2.0	46	93	4	159	26	4	30	38	1.76
16973251--16973358	46	2.5	44	85	11	145	28	3	31	36	1.75
16973486--16973744	109	2.2	115	84	9	316	51	4	1	42	1.30
16975080--16975183	49	2.1	49	87	3	147	49	11	8	30	1.69
16977685--16977725	18	2.2	19	91	8	66	48	19	0	31	1.49
16977971--16977995	10	2.5	10	100	0	50	44	28	8	20	1.79
16979888--16980341	71	6.4	70	76	4	320	35	26	16	20	1.94
16980392--16980625	68	3.4	68	84	0	279	29	30	15	24	1.95
16989377--16989426	21	2.4	20	73	26	50	16	12	14	58	1.64
16989450--16989490	20	2.0	21	85	4	57	31	2	0	65	1.05
16988598--16989593	502	2.0	501	93	0	1704	30	15	14	39	1.87
16989727--16990122	87	4.6	85	79	9	358	30	14	11	43	1.81
16989727--16990040	87	3.6	88	83	6	363	31	14	10	43	1.79
16989790--16990158	82	4.3	84	79	9	297	31	13	12	42	1.81
16999012--16999071	30	2.2	26	85	11	75	70	8	11	10	1.35
16999915--16999948	7	5.0	7	92	7	61	70	0	14	14	1.17
16999919--16999948	13	2.3	13	100	0	60	73	0	13	13	1.10
17001247--17001337	44	2.1	44	82	0	110	29	20	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17001150--17001429	132	2.1	132	87	2	402	28	22	24	24	1.99
17001375--17001963	44	13.4	43	68	13	138	30	20	22	26	1.98
17001375--17001822	219	2.1	219	91	1	720	29	20	22	26	1.99
17001770--17002044	86	3.2	85	67	15	238	31	21	20	27	1.97
17001636--17002045	174	2.4	174	91	1	660	31	20	21	26	1.98
17002026--17002124	44	2.2	44	80	8	112	36	21	18	24	1.95
17003732--17003769	3	12.7	3	100	0	76	31	0	0	68	0.90
17015044--17015096	20	2.8	20	80	5	56	33	5	7	52	1.53
17027994--17028042	22	2.3	22	86	10	66	59	2	0	38	1.09
17027974--17028064	31	3.0	30	78	16	89	54	2	0	42	1.12
17027971--17028035	29	2.3	27	80	17	78	60	3	0	36	1.13
17027994--17028055	22	2.9	22	78	7	65	54	1	0	43	1.09
17032579--17032612	17	2.0	17	88	0	50	67	2	0	29	1.05
17034668--17034713	24	2.0	24	91	4	76	21	8	8	60	1.53
17034689--17034780	31	2.9	31	80	3	103	27	15	7	50	1.71
17035367--17035405	15	2.5	17	76	23	50	20	23	0	56	1.42
17035639--17035676	14	2.7	14	92	8	60	36	2	18	42	1.64
17035660--17035700	21	2.0	21	100	0	82	29	4	14	51	1.63
17035645--17035710	35	1.9	34	84	9	89	33	4	15	46	1.66
17035691--17035777	33	2.7	32	76	13	97	28	9	17	44	1.79
17035796--17035834	20	2.0	20	94	0	69	48	2	0	48	1.15
17037060--17037114	27	2.0	27	86	6	76	50	18	3	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17038603--17038669	21	3.1	21	68	19	57	31	7	8	52	1.61
17038611--17038669	21	2.8	21	71	21	59	33	8	8	49	1.64
17038596--17038676	43	1.9	42	87	5	119	33	7	8	50	1.61
17044985--17045707	360	2.0	360	99	0	1437	33	16	14	35	1.89
17049495--17049546	24	2.2	24	85	0	68	38	3	7	50	1.50
17053533--17053584	24	2.2	24	85	0	68	34	3	11	50	1.57
17053550--17053596	24	2.0	24	87	8	69	38	4	10	46	1.58
17054548--17054801	105	2.4	105	79	5	255	33	17	12	36	1.88
17054882--17054960	39	2.0	39	92	0	131	18	17	6	56	1.61
17060311--17060523	51	4.2	51	90	1	322	32	15	23	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182