genome.fa.s21.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  111  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33710796--33710869	18	4.1	18	76	15	73	77	2	14	5	1.07
33710816--33710882	15	4.5	15	76	12	59	74	2	16	5	1.14
33710788--33710871	35	2.4	36	82	9	111	75	3	15	5	1.14
33714984--33715026	22	1.9	23	90	4	70	37	32	4	25	1.77
33716910--33716955	8	5.5	8	80	10	56	8	43	2	45	1.47
33722098--33722365	136	2.0	137	84	2	360	31	25	21	21	1.98
33726906--33727008	43	2.4	43	95	0	188	22	13	34	29	1.92
33726990--33727063	29	2.6	29	86	4	96	25	14	32	27	1.95
33727379--33727483	40	2.6	41	76	10	99	25	24	26	22	2.00
33727458--33727614	40	3.9	40	89	0	224	26	23	25	24	2.00
33727416--33727608	80	2.4	80	81	3	210	27	23	24	24	2.00
33727379--33727606	120	1.9	120	82	5	291	26	23	25	24	2.00
33728290--33728368	37	2.1	37	90	0	122	25	31	18	24	1.98
33728486--33728850	47	7.7	47	97	0	631	30	28	9	31	1.88
33733524--33733788	47	5.6	47	88	3	377	33	8	29	29	1.86
33733524--33733786	96	2.7	96	89	2	402	33	8	29	29	1.87
33735815--33735899	39	2.2	39	84	2	116	27	23	28	21	1.99
33735776--33736450	40	16.9	40	92	2	995	23	20	29	26	1.99
33739070--33739167	27	3.5	28	90	2	135	26	13	28	31	1.94
33739098--33739180	27	3.0	27	87	5	96	30	12	25	32	1.92
33739070--33739181	28	4.0	27	83	6	98	28	12	25	33	1.92
33743633--33743730	27	3.5	28	90	2	135	26	13	28	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33743661--33743743	27	3.0	27	87	5	96	30	12	25	32	1.92
33743633--33743744	28	4.0	27	83	6	98	28	12	25	33	1.92
33758203--33758242	13	3.2	13	92	3	64	32	0	0	67	0.91
33758203--33758266	6	11.0	6	78	9	62	31	0	3	65	1.08
33758214--33758255	19	2.3	19	83	4	50	30	0	4	64	1.14
33763141--33763261	43	2.9	42	78	7	136	33	14	23	27	1.94
33768490--33768711	40	5.6	40	92	1	358	27	26	22	22	1.99
33779101--33779304	43	4.8	43	77	3	196	25	15	27	31	1.96
33784634--33784777	27	5.3	27	82	3	173	26	24	9	39	1.86
33784634--33784777	54	2.7	54	86	2	191	26	24	9	39	1.86
33784769--33784934	27	6.1	27	79	7	140	37	22	11	28	1.89
33784776--33784935	54	3.0	53	80	3	194	38	21	11	28	1.88
33784809--33784935	27	4.7	27	87	3	175	39	22	9	28	1.85
33784889--33784956	27	2.5	27	83	4	66	50	19	2	27	1.62
33784937--33785022	27	3.1	27	78	17	79	40	13	8	37	1.75
33784809--33785016	108	1.9	108	82	2	254	41	19	8	30	1.81
33784806--33785042	110	2.2	108	80	1	258	40	19	9	30	1.83
33785076--33785140	27	2.4	27	82	5	78	35	15	24	24	1.94
33785949--33786032	25	3.4	24	85	8	107	28	22	22	26	1.99
33785976--33786046	25	2.9	24	87	8	72	26	21	23	28	1.99
33786167--33786300	42	3.2	42	94	0	241	31	15	20	32	1.94
33786324--33786407	31	2.7	31	96	1	152	27	17	27	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33787414--33787488	38	2.0	37	94	5	125	24	18	21	34	1.95
33788916--33788999	44	1.9	44	85	4	116	39	11	23	25	1.89
33789140--33789259	47	2.6	47	91	0	195	36	12	24	26	1.91
33789232--33789444	54	3.9	54	77	4	178	36	16	23	23	1.94
33789246--33789434	55	3.5	53	77	6	173	35	18	23	22	1.96
33789246--33789446	53	3.8	52	78	5	177	35	17	23	22	1.95
33793106--33793203	27	3.5	28	90	2	135	26	13	28	31	1.94
33793134--33793216	27	3.0	27	87	5	96	30	12	25	32	1.92
33793106--33793217	28	4.0	27	83	6	98	28	12	25	33	1.92
33800633--33800821	55	3.5	53	77	5	139	34	18	25	21	1.96
33800625--33800832	53	3.9	54	78	5	197	34	17	25	22	1.96
33803981--33804062	26	3.2	26	91	0	137	34	7	23	35	1.82
33805659--33805799	27	5.2	27	79	14	166	18	23	22	35	1.96
33805656--33805799	54	2.7	54	91	2	227	18	23	22	35	1.96
33809643--33809674	16	1.9	17	93	6	57	37	6	25	31	1.81
33814278--33814503	49	4.7	47	71	13	169	26	16	29	26	1.97
33815455--33815485	15	2.1	15	93	0	53	48	12	19	19	1.81
33815692--33815739	21	2.3	21	88	0	69	14	29	27	29	1.95
33815708--33815751	21	2.1	21	87	4	63	11	34	27	27	1.91
33818723--33819122	55	7.5	54	73	12	278	24	24	16	35	1.95
33818745--33819122	209	1.8	209	91	1	632	24	24	16	35	1.95
33822730--33823676	80	11.8	79	97	0	1608	27	29	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33825286--33825455	47	3.6	47	94	0	295	26	22	12	38	1.90
33831819--33831985	46	3.6	46	74	15	164	28	19	29	22	1.98
33831819--33832139	47	6.8	48	70	15	188	27	18	29	24	1.98
33840229--33840446	68	3.3	64	78	9	156	30	16	27	25	1.96
33842441--33842506	25	2.6	25	90	0	105	27	19	21	31	1.97
33842557--33842626	25	2.8	25	84	0	86	22	20	24	32	1.97
33842395--33842632	130	1.8	130	82	1	307	25	17	24	32	1.97
33842566--33842679	25	4.6	25	80	2	86	22	16	23	36	1.94
33846277--33846328	23	2.3	23	96	3	97	42	3	17	36	1.67
33859501--33859563	28	2.2	28	86	5	83	33	4	28	33	1.78
33862970--33863063	46	2.0	46	95	0	170	25	17	22	35	1.95
33868715--33868862	67	2.2	67	87	0	224	41	18	17	21	1.90
33871547--33871644	48	2.0	48	100	0	196	34	12	30	22	1.91
33873464--33873501	17	2.2	17	90	0	58	63	0	5	31	1.17
33890218--33890266	24	2.0	24	92	0	80	26	20	30	22	1.98
33892871--33893026	82	1.9	81	84	3	206	25	16	29	28	1.97
33892871--33893026	27	5.7	27	81	4	161	25	16	29	28	1.97
33892870--33893047	27	6.6	27	79	3	151	25	16	29	28	1.97
33892863--33893047	82	2.3	81	77	2	201	25	16	29	29	1.96
33900909--33901058	55	2.8	54	80	4	149	26	15	29	28	1.96
33900881--33901058	27	6.6	27	77	6	146	25	15	28	30	1.96
33900882--33901037	82	1.9	81	81	6	190	25	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33904696--33905687	79	12.6	79	96	0	1753	27	5	22	45	1.72
33908992--33909178	49	3.8	49	87	0	248	31	26	19	22	1.98
33914659--33914798	50	2.8	50	80	4	156	27	21	28	22	1.99
33923048--33923074	6	4.5	6	100	0	54	0	33	0	66	0.92
33928503--33928539	20	1.9	18	89	10	56	59	2	8	29	1.40
33932818--33932857	20	1.9	22	85	10	57	20	5	15	60	1.53
33936519--33936640	33	3.4	33	74	18	127	31	27	20	20	1.97
33936513--33936692	75	2.4	75	93	1	308	32	26	19	21	1.97
33944683--33944816	66	2.0	66	98	0	259	31	26	7	35	1.84
33950821--33950870	23	2.2	23	96	0	91	48	16	14	22	1.81
33950834--33950882	23	2.1	23	84	0	62	48	16	14	20	1.80
33951168--33951265	41	2.4	40	81	1	115	32	18	17	31	1.94
33953640--33953712	24	3.1	24	78	7	78	32	27	16	23	1.96
33965962--33966022	20	3.1	20	80	4	70	32	9	11	45	1.73
33967912--33968015	52	2.0	51	98	1	199	32	18	17	30	1.94
33969103--33969163	22	2.8	22	87	5	79	45	3	1	49	1.28
33969121--33969164	22	2.0	22	100	0	88	45	4	0	50	1.22
33970879--33970922	4	11.0	4	100	0	88	25	0	25	50	1.50
33986394--33986478	27	3.1	27	70	0	71	18	27	20	34	1.96
33987986--33988035	27	1.9	27	84	8	68	56	20	0	24	1.43
33988366--33988427	30	2.1	30	96	0	115	58	14	3	24	1.51
33990109--33990150	20	2.1	20	95	0	75	50	23	7	19	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33990639--33990708	24	2.8	25	73	16	65	55	2	1	40	1.23
33992973--33993053	41	2.0	41	95	0	144	30	4	14	49	1.65
33996833--33996915	41	2.0	41	85	0	112	32	8	10	48	1.68
34006416--34006492	39	2.0	39	100	0	154	31	12	6	49	1.67
34006429--34006492	21	3.2	21	62	20	55	31	14	6	48	1.68
34012530--34012595	33	2.0	33	100	0	132	30	18	12	39	1.87
34015441--34015495	24	2.2	24	79	17	60	54	0	0	45	0.99
34015642--34015679	18	2.2	17	95	4	67	52	0	0	47	1.00
34019612--34019749	51	2.7	51	84	3	172	31	17	26	25	1.97
34020583--34020651	26	2.7	26	80	6	70	27	26	20	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182