genome.fa.s21.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  109  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32997811--32997851	7	5.7	7	91	2	64	41	39	0	19	1.52
32997811--32997851	21	1.9	22	95	5	75	41	39	0	19	1.52
32998139--32998169	6	5.2	6	100	0	62	16	0	0	83	0.64
32998133--32998180	18	2.7	18	83	6	62	18	0	6	75	1.01
33001781--33001849	29	2.4	29	100	0	138	11	30	40	17	1.85
33001838--33001941	46	2.3	46	81	5	122	25	30	33	10	1.89
33017180--33017217	13	3.0	13	80	7	51	42	0	0	57	0.98
33018681--33018767	9	9.6	9	87	7	113	40	28	11	19	1.86
33020310--33020353	3	14.7	3	100	0	88	65	0	0	34	0.93
33031211--33031238	10	2.8	10	100	0	56	17	0	0	82	0.68
33033425--33033572	17	8.2	18	71	17	94	42	10	8	39	1.68
33033425--33033467	19	2.2	20	87	8	61	37	4	6	51	1.50
33033448--33033517	16	4.3	15	76	18	59	48	10	8	32	1.67
33033446--33033573	35	3.7	33	74	16	100	44	10	7	36	1.69
33033464--33033572	18	6.2	16	74	18	76	43	11	8	36	1.72
33033514--33033585	20	3.7	20	75	19	80	38	11	6	43	1.67
33033463--33033582	37	3.3	37	77	11	124	43	10	8	37	1.70
33033464--33033949	17	26.4	17	67	20	119	43	10	12	34	1.76
33033606--33033947	36	9.5	36	72	17	191	41	9	14	33	1.79
33033621--33033938	17	17.7	17	71	15	162	42	10	14	33	1.79
33033621--33033935	18	17.5	18	70	15	163	42	9	14	33	1.78
33033606--33033938	37	9.2	36	74	9	159	42	10	14	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33034206--33034255	14	3.3	15	74	20	50	82	4	2	12	0.90
33034207--33034255	21	2.2	23	82	7	57	81	4	2	12	0.91
33034840--33034892	26	2.0	26	82	7	63	1	9	16	71	1.21
33035213--33035376	30	5.6	29	77	7	118	41	6	20	31	1.78
33035846--33036596	75	9.8	75	83	8	858	34	21	16	27	1.95
33035787--33036574	154	5.1	150	83	9	914	34	21	16	27	1.95
33037443--33037514	1	72.0	1	71	0	54	1	6	5	86	0.77
33037443--33037517	24	3.1	24	86	9	91	1	6	6	85	0.80
33037443--33037514	25	2.9	25	85	6	85	1	6	5	86	0.77
33037462--33037517	8	6.9	8	84	11	69	0	3	8	87	0.65
33044340--33044400	30	2.0	30	96	0	113	21	22	14	40	1.90
33046266--33046401	19	7.3	19	73	14	104	40	8	10	40	1.70
33046269--33046781	36	14.4	35	67	20	180	43	9	14	32	1.77
33046305--33046415	20	6.0	18	74	16	93	43	10	9	36	1.71
33046464--33046781	17	17.8	17	70	13	158	43	10	15	30	1.80
33046470--33046639	74	2.3	74	79	9	172	45	11	15	28	1.80
33046464--33046765	52	5.7	52	69	18	167	43	10	15	30	1.80
33046267--33046774	17	27.4	18	68	20	121	43	9	13	33	1.77
33046898--33046932	18	1.9	18	100	0	70	54	11	11	22	1.68
33048688--33048714	12	2.2	12	100	0	54	51	7	0	40	1.30
33049198--33049375	27	6.6	27	83	3	205	26	15	28	29	1.96
33049199--33049354	82	1.9	81	88	3	233	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33049195--33049375	82	2.2	81	83	2	229	27	15	27	29	1.96
33057802--33057992	38	5.2	35	77	16	156	41	9	12	36	1.75
33057788--33057992	37	5.6	34	76	17	150	41	9	12	36	1.76
33057787--33057992	72	2.8	70	81	13	215	41	9	12	36	1.76
33057839--33058069	75	3.0	76	78	12	181	41	9	12	35	1.75
33058026--33058069	21	2.2	20	87	4	61	40	9	11	38	1.73
33057989--33058143	56	2.9	55	82	7	167	42	9	14	34	1.77
33058047--33058143	34	2.8	35	90	6	162	43	10	13	32	1.78
33057848--33058143	17	16.2	17	68	15	146	42	9	13	33	1.78
33058621--33058690	10	6.6	10	75	15	52	0	17	0	82	0.66
33058629--33058690	23	2.7	23	85	9	81	0	16	0	83	0.64
33058620--33058693	26	2.9	26	81	15	84	0	17	0	82	0.67
33058689--33058733	14	2.9	16	80	12	58	2	28	31	37	1.69
33058732--33058766	15	2.3	15	95	0	61	2	17	54	25	1.57
33059168--33059210	14	2.9	15	86	6	52	0	25	2	72	0.97
33059215--33059271	23	2.5	23	77	11	55	3	10	19	66	1.36
33059656--33059723	30	2.2	30	84	2	82	47	2	16	33	1.62
33061104--33061196	29	3.2	29	82	1	114	20	11	12	54	1.69
33061113--33061206	29	3.2	29	76	11	95	21	12	12	53	1.72
33065615--33065773	61	2.8	56	77	19	159	50	4	2	42	1.35
33065569--33065758	66	3.0	64	82	12	246	50	4	2	42	1.37
33065569--33065746	61	2.8	61	86	9	243	50	5	2	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33065728--33065779	22	2.5	21	84	6	70	57	0	0	42	0.98
33068536--33068569	16	2.1	17	88	5	52	11	0	11	76	1.02
33077768--33077951	40	4.6	41	84	11	199	24	27	22	26	2.00
33077768--33077951	79	2.3	82	82	13	217	24	27	22	26	2.00
33079028--33079052	12	2.1	12	100	0	50	0	8	0	92	0.40
33085893--33086102	28	7.5	28	91	1	323	32	26	12	28	1.92
33105185--33105263	40	2.0	40	100	0	158	35	25	15	24	1.94
33105583--33105616	6	5.3	6	86	13	50	29	0	2	67	1.05
33105583--33105616	14	2.6	13	90	9	52	29	0	2	67	1.05
33106300--33106330	15	2.1	15	100	0	62	38	25	16	19	1.92
33113636--33114050	47	8.7	47	95	1	695	29	30	7	32	1.85
33115189--33115230	18	2.3	18	100	0	84	42	19	4	33	1.72
33119438--33119548	25	4.4	25	77	8	82	29	19	23	27	1.98
33119438--33119548	50	2.2	50	85	3	143	29	19	23	27	1.98
33124936--33124972	11	3.4	11	100	0	74	51	8	0	40	1.32
33128224--33128253	16	1.9	16	93	6	53	50	20	0	30	1.49
33129586--33129622	11	3.4	11	100	0	74	51	8	0	40	1.32
33132874--33132903	16	1.9	16	93	6	53	50	20	0	30	1.49
33141749--33141791	21	2.0	21	91	8	70	32	4	18	44	1.71
33143462--33143491	12	2.5	12	94	0	51	23	40	30	6	1.80
33171049--33171231	40	4.6	40	81	10	214	25	27	22	24	2.00
33171049--33171231	79	2.3	81	84	7	232	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33173327--33173384	27	2.2	26	78	3	62	18	17	17	46	1.84
33175793--33175817	13	1.9	13	100	0	50	36	0	16	48	1.46
33191731--33191896	31	5.4	31	73	8	151	51	3	2	42	1.32
33191728--33191898	61	2.8	61	92	0	288	51	3	2	42	1.31
33192709--33192741	17	1.9	17	88	11	50	51	6	0	42	1.26
33212720--33212755	15	2.3	15	90	4	54	44	0	16	38	1.48
33214918--33214955	17	2.2	17	100	0	76	47	10	28	13	1.76
33229312--33229349	19	2.0	19	100	0	76	42	0	5	52	1.24
33230390--33230425	18	2.0	18	100	0	72	38	11	27	22	1.88
33231940--33232006	30	2.2	30	79	12	75	62	2	5	28	1.33
33243633--33243662	2	15.0	2	92	0	51	50	3	46	0	1.18
33245492--33245522	15	2.1	15	100	0	62	38	6	32	22	1.80
33249821--33249851	15	2.1	15	100	0	62	38	6	32	22	1.80
33252306--33252335	15	1.9	16	93	6	53	73	0	3	23	0.98
33256362--33256388	12	2.2	12	100	0	54	14	18	22	44	1.86
33259725--33259928	69	3.0	69	94	0	345	34	25	19	20	1.96
33259730--33259958	69	3.3	68	90	2	341	35	25	19	20	1.95
33259967--33260174	57	3.6	56	82	5	240	27	19	12	40	1.88
33259967--33260174	114	1.8	116	82	8	273	27	19	12	40	1.88
33263622--33263737	25	4.7	24	75	9	92	18	23	22	36	1.95
33263648--33263745	49	2.0	49	80	7	110	17	24	21	36	1.94
33277265--33277662	70	5.7	70	84	1	447	27	18	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33277265--33277664	140	2.9	140	85	0	541	27	18	23	30	1.98
33277285--33277664	210	1.8	210	85	0	535	27	18	23	30	1.97
33278027--33278077	23	2.2	23	92	0	84	41	21	9	27	1.84
33296513--33297959	723	2.0	723	99	0	2867	40	19	15	25	1.90
33300908--33300938	3	10.3	3	92	0	53	32	0	64	3	1.09
33301398--33301441	19	2.2	20	92	4	72	6	20	0	72	1.07
33301411--33301455	20	2.2	21	84	4	56	6	24	0	68	1.13
33305009--33305077	5	13.0	5	74	17	59	39	17	2	40	1.64
33305018--33305077	22	2.7	23	75	14	63	38	16	3	41	1.65
33304975--33305077	54	1.9	54	82	7	129	39	16	5	37	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182