genome.fa.s21.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  141  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43282029--43282213	40	4.6	40	68	15	112	45	1	3	49	1.28
43282066--43282160	20	4.7	20	70	11	86	46	1	4	48	1.28
43282033--43282200	60	2.8	60	99	0	327	45	1	3	48	1.30
43282081--43282188	34	3.4	34	73	19	133	47	1	2	48	1.27
43282066--43282211	20	7.1	21	65	20	60	46	1	3	48	1.27
43282019--43282214	60	3.2	60	92	2	304	47	1	3	47	1.27
43285100--43285145	20	2.2	20	84	11	56	67	15	10	6	1.40
43285212--43285249	8	4.8	8	83	9	51	73	2	0	23	0.95
43286668--43286732	22	3.0	21	77	6	67	20	21	23	35	1.96
43286891--43286992	27	3.8	27	87	5	134	18	23	21	36	1.95
43287129--43287279	6	24.3	6	71	18	105	19	17	15	48	1.81
43287129--43287270	31	4.5	31	95	0	230	19	17	14	48	1.81
43287129--43287295	62	2.7	62	88	3	230	19	16	14	49	1.80
43289614--43289645	13	2.4	14	94	5	57	37	0	9	53	1.34
43290058--43290109	21	2.5	21	83	0	68	26	21	48	3	1.67
43290350--43290439	31	2.9	31	94	0	153	15	5	21	57	1.58
43295321--43295373	18	2.6	20	77	20	56	33	3	11	50	1.56
43295514--43295572	25	2.4	24	80	8	64	28	23	18	28	1.98
43298797--43298865	21	3.4	21	71	15	72	36	1	7	55	1.37
43298852--43298882	15	2.1	14	94	5	53	35	3	6	54	1.42
43299498--43299554	23	2.5	23	97	0	105	7	3	40	49	1.47
43310196--43310286	43	2.1	43	87	0	128	37	20	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43310287--43310420	43	3.1	43	89	3	189	28	17	19	35	1.94
43311226--43311263	19	2.1	18	85	9	51	52	0	7	39	1.31
43318731--43318844	37	3.0	38	79	8	117	24	11	48	15	1.78
43318783--43318858	37	2.1	37	87	0	107	26	9	48	15	1.75
43319680--43319711	15	2.1	15	94	0	55	28	6	0	65	1.16
43319846--43319879	17	1.9	17	88	5	50	47	35	2	14	1.60
43320650--43320741	39	2.3	38	75	10	87	23	15	21	39	1.92
43327872--43328377	253	2.0	253	98	0	985	42	6	6	43	1.56
43331547--43331652	10	11.6	9	68	20	60	35	0	1	61	1.13
43331542--43331581	19	2.1	19	86	9	55	25	0	5	70	1.08
43331547--43331600	29	2.0	26	85	10	72	29	0	3	66	1.09
43331547--43331589	19	2.2	20	83	4	52	27	0	4	67	1.10
43331578--43331633	16	3.4	16	80	2	67	39	0	0	60	0.97
43350126--43350276	53	2.8	53	89	4	214	29	27	16	25	1.97
43352035--43352097	26	2.4	27	81	10	76	31	26	14	26	1.95
43354796--43354971	46	3.7	46	87	4	228	18	23	15	43	1.87
43355020--43355317	54	5.4	54	97	2	533	31	22	18	27	1.97
43356693--43356729	20	1.9	20	88	5	58	51	8	0	40	1.32
43357851--43357897	17	2.6	18	86	6	60	8	12	0	78	0.95
43358835--43358916	18	4.3	18	64	27	53	29	4	10	54	1.56
43358816--43358931	58	2.0	58	100	0	232	29	5	10	55	1.55
43385175--43385334	32	5.0	32	88	0	239	45	8	11	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43385175--43385334	64	2.5	64	91	0	266	45	8	11	34	1.72
43415439--43415641	74	2.7	74	84	4	259	28	18	24	28	1.98
43415803--43415831	14	2.1	14	100	0	58	13	13	6	65	1.45
43415747--43416268	91	5.7	91	95	1	863	27	19	20	32	1.97
43416202--43416410	73	2.9	72	85	7	278	27	20	22	30	1.98
43416996--43417106	53	2.1	53	96	0	204	25	21	14	38	1.91
43420212--43420250	19	2.1	19	95	0	69	28	23	20	28	1.99
43420313--43420370	25	2.3	25	87	0	89	44	10	29	15	1.79
43421027--43421061	18	1.9	18	100	0	70	45	31	11	11	1.76
43425055--43425087	13	2.4	14	85	10	50	18	18	15	48	1.81
43435131--43435218	43	2.0	43	89	4	133	36	20	18	25	1.95
43438209--43438262	28	1.9	28	85	7	74	46	0	0	53	1.00
43444004--43444028	13	1.9	13	100	0	50	36	0	8	56	1.29
43445236--43445336	42	2.4	42	76	1	103	28	13	24	32	1.94
43445394--43445516	48	2.6	48	86	2	158	26	19	26	26	1.99
43459086--43459178	46	2.0	46	100	0	186	21	27	15	35	1.93
43461506--43461656	53	2.8	53	89	4	214	29	27	16	25	1.97
43477159--43477213	10	6.0	9	78	21	53	32	0	1	65	1.03
43482322--43482360	21	1.9	21	94	5	71	2	25	0	71	0.98
43482413--43482437	9	2.8	9	100	0	50	44	8	0	48	1.32
43483059--43483083	12	2.1	12	100	0	50	60	16	0	24	1.36
43483285--43483329	23	2.0	22	95	4	81	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43483284--43483356	23	3.0	23	77	15	74	50	1	0	47	1.09
43483294--43483356	27	2.2	28	78	13	67	47	1	0	50	1.10
43492476--43492538	28	2.2	29	83	13	87	44	1	0	53	1.10
43494507--43494634	3	43.0	3	71	13	68	29	5	5	59	1.43
43496422--43496493	36	2.0	36	94	0	126	38	13	19	27	1.90
43496777--43496818	19	2.2	19	83	8	50	21	23	16	38	1.93
43501458--43501870	44	9.4	44	64	13	143	33	21	23	21	1.97
43501401--43502448	88	11.9	88	87	1	1404	33	21	23	21	1.97
43503849--43503976	3	43.0	3	71	13	50	29	6	6	57	1.48
43503880--43503976	15	6.3	15	73	7	70	31	8	5	54	1.52
43506123--43506182	28	2.1	28	81	9	68	21	1	16	60	1.45
43520298--43520731	217	2.0	213	96	1	796	22	14	19	43	1.88
43526301--43526392	17	5.4	18	69	23	58	52	4	2	41	1.33
43527873--43527901	11	2.7	11	94	5	51	82	0	0	17	0.66
43532749--43532802	18	3.0	19	78	10	60	57	0	0	42	0.98
43534015--43534040	2	13.0	2	100	0	52	50	0	0	50	1.00
43543620--43543727	38	2.8	38	88	0	144	19	23	27	29	1.98
43543720--43544562	43	19.6	43	99	0	1668	11	25	32	30	1.91
43546093--43546196	48	2.2	48	82	6	122	29	22	29	18	1.97
43548058--43548232	46	3.8	45	77	7	181	29	30	20	20	1.97
43548065--43548237	93	1.9	93	92	0	292	28	30	20	20	1.98
43550011--43550094	43	2.0	43	95	0	150	29	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43550859--43551184	117	2.8	117	94	2	559	45	10	13	30	1.78
43554631--43554823	47	4.0	49	81	9	200	30	29	17	23	1.97
43555499--43555588	45	2.0	45	97	0	171	27	35	12	24	1.91
43556767--43556877	44	2.6	43	71	9	109	26	23	18	31	1.98
43556841--43557246	90	4.6	88	75	11	294	22	23	19	34	1.96
43556848--43557282	44	9.8	44	67	17	175	22	23	20	33	1.97
43564214--43564347	52	2.6	53	86	5	184	29	17	24	29	1.97
43564234--43564378	52	2.7	53	83	11	174	28	15	26	29	1.96
43577928--43578018	45	2.0	45	91	0	146	29	37	8	24	1.85
43582079--43582189	53	2.1	52	80	9	118	30	29	1	37	1.68
43582545--43582582	19	2.0	19	94	0	67	31	10	23	34	1.89
43585007--43585169	49	3.6	45	83	8	156	30	26	14	28	1.95
43585033--43585169	49	2.9	48	89	4	188	29	27	13	29	1.94
43585007--43585216	95	2.3	91	79	8	221	30	25	14	29	1.95
43585049--43585216	47	3.6	46	86	4	185	29	26	15	29	1.96
43585252--43585393	31	4.6	31	90	1	214	26	26	18	28	1.98
43588535--43588630	47	2.0	48	85	2	131	20	15	30	33	1.94
43593118--43593169	23	2.3	23	100	0	104	36	17	23	23	1.95
43598594--43598646	24	2.2	24	86	0	70	22	22	24	30	1.99
43599305--43599343	15	2.6	16	84	8	55	53	0	12	33	1.39
43601652--43602164	261	2.0	263	85	1	708	35	18	18	27	1.94
43601648--43602164	132	3.9	131	77	3	513	35	18	18	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43603222--43603247	12	2.2	12	100	0	52	50	7	0	42	1.31
43606313--43606337	8	3.1	8	100	0	50	76	0	0	24	0.80
43606591--43606659	30	2.3	30	82	7	77	33	17	4	44	1.68
43611476--43612709	411	3.0	411	95	0	2252	32	22	17	28	1.96
43616212--43616250	14	2.8	14	100	0	78	58	12	7	20	1.58
43617079--43617122	7	6.3	7	84	10	63	70	0	2	27	0.99
43618601--43618663	33	1.9	33	100	0	126	36	0	33	30	1.58
43621557--43621615	30	1.9	31	86	3	84	49	5	18	27	1.68
43627236--43627350	27	4.3	26	84	9	115	37	22	22	17	1.94
43627236--43627350	54	2.1	54	85	3	151	37	22	22	17	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182