genome.fa.s21.2.7.7.80.10.50.1000.168.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  168  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51441605--51441666	19	3.2	19	80	8	54	46	16	19	17	1.84
51441624--51441666	20	2.2	20	87	8	61	51	18	16	13	1.77
51442291--51442390	31	3.3	31	73	8	114	37	2	8	53	1.42
51447412--51447537	63	2.0	63	90	0	198	33	19	13	34	1.90
51449689--51449734	22	2.1	20	84	15	56	54	0	10	34	1.36
51455213--51455283	28	2.6	28	80	8	83	35	23	21	19	1.96
51455260--51455324	29	2.2	29	86	0	85	26	16	26	30	1.97
51456338--51456371	17	1.9	18	88	5	52	58	11	26	2	1.47
51468280--51468329	24	2.1	24	81	7	57	20	18	0	62	1.34
51469466--51469509	22	2.0	22	81	4	52	47	0	18	34	1.49
51470762--51470837	9	8.4	9	86	0	98	42	23	7	26	1.81
51470935--51470984	18	2.7	18	81	3	55	14	2	42	42	1.56
51473807--51473933	25	5.1	25	72	6	89	34	21	24	19	1.96
51473872--51473970	50	2.0	50	84	4	128	31	17	28	23	1.97
51473898--51473970	25	2.9	26	73	8	78	30	16	27	26	1.97
51477515--51477585	24	2.9	24	81	6	70	16	23	0	59	1.38
51484146--51484190	21	2.1	22	84	12	58	71	0	2	26	0.98
51490244--51490286	9	4.9	9	80	5	52	62	4	0	32	1.15
51493388--51493464	9	8.4	9	76	2	64	24	10	23	41	1.85
51497299--51497458	54	3.0	52	69	15	146	29	15	22	33	1.94
51497934--51497967	3	11.3	3	100	0	68	32	0	32	35	1.58
51509673--51509724	15	3.5	15	70	19	54	15	34	26	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51509663--51509729	30	2.2	30	100	0	134	19	37	25	17	1.94
51513738--51513839	43	2.3	43	88	1	141	31	23	17	27	1.97
51515022--51515104	40	2.1	40	95	0	148	33	27	12	26	1.92
51526761--51526785	11	2.3	11	100	0	50	44	0	0	56	0.99
51526723--51526776	22	2.5	20	77	16	54	42	0	3	53	1.18
51527090--51527140	8	6.6	8	76	14	54	60	1	0	37	1.08
51527090--51527140	15	3.3	15	81	8	59	60	1	0	37	1.08
51527127--51527173	19	2.4	19	79	10	51	61	0	4	34	1.15
51527127--51527180	20	2.7	20	80	11	56	62	0	3	33	1.12
51527229--51527268	19	2.1	19	86	9	55	25	7	0	67	1.16
51527368--51527415	19	2.5	19	79	0	51	25	4	0	70	1.04
51545220--51545271	19	2.7	19	81	0	59	28	21	25	25	1.99
51549598--51549648	19	2.8	18	80	8	59	64	1	5	27	1.27
51549593--51549654	25	2.5	24	80	10	63	61	3	4	30	1.33
51554273--51554349	29	2.5	31	74	18	81	46	10	12	29	1.76
51555364--51555435	34	2.1	34	97	0	135	34	23	11	30	1.90
51555999--51556059	3	19.3	3	74	15	52	59	3	1	36	1.24
51556016--51556045	16	1.9	15	93	6	51	63	3	0	33	1.11
51557072--51557125	24	2.2	24	75	12	56	42	0	1	55	1.10
51557970--51558021	24	2.2	24	85	0	68	44	9	7	38	1.66
51559289--51559338	9	5.6	9	80	0	55	42	18	10	30	1.82
51559308--51559349	18	2.3	18	83	0	57	35	23	11	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51560142--51560205	28	2.4	28	89	5	105	42	7	0	50	1.31
51560253--51560338	27	3.2	26	83	3	100	27	24	27	19	1.99
51560642--51560707	19	3.5	19	79	4	89	37	10	1	50	1.47
51560933--51560998	19	3.5	19	79	4	89	50	1	10	37	1.47
51560712--51561270	276	2.0	276	98	0	1082	45	7	6	40	1.59
51561209--51561304	19	5.2	19	81	5	124	48	0	13	37	1.43
51561209--51561304	37	2.6	37	98	0	183	48	0	13	37	1.43
51561928--51561992	27	2.4	28	94	2	114	53	0	4	41	1.21
51567347--51567406	30	2.0	30	83	0	75	50	3	10	36	1.53
51567799--51567954	26	6.1	26	68	14	92	43	1	5	50	1.32
51567795--51568133	102	3.1	102	87	9	428	43	2	5	49	1.37
51567897--51568173	120	2.3	120	89	3	432	43	2	4	49	1.37
51568310--51568407	45	2.2	45	87	5	137	33	29	5	31	1.79
51573511--51573610	40	2.4	41	80	6	114	28	21	24	27	1.99
51574425--51574712	97	3.0	95	87	3	391	40	17	1	40	1.58
51580375--51580400	12	2.2	12	100	0	52	38	7	0	53	1.30
51587051--51587089	21	1.9	21	84	5	53	48	7	0	43	1.31
51599545--51600596	211	5.0	213	78	6	1070	33	21	16	28	1.94
51599545--51600573	420	2.4	423	80	6	1176	34	21	16	28	1.95
51602171--51602209	15	2.5	15	87	8	51	33	0	7	58	1.26
51606885--51607204	27	11.9	27	78	2	256	21	15	20	43	1.88
51611604--51611647	22	2.0	22	86	8	63	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51620150--51620199	25	2.0	27	88	11	79	52	0	6	42	1.26
51621103--51621218	43	2.7	43	74	15	121	22	18	28	31	1.97
51628176--51628330	41	3.8	41	90	0	256	21	21	27	29	1.98
51628685--51628729	14	3.1	15	87	9	67	26	0	35	37	1.57
51629021--51629064	14	3.1	14	81	12	54	20	2	40	36	1.65
51629381--51629459	23	3.3	23	76	13	95	55	0	6	37	1.25
51629416--51629536	58	2.1	58	95	0	215	54	0	4	40	1.22
51629476--51629581	12	9.8	11	70	22	57	54	0	3	41	1.18
51629366--51629567	108	1.9	108	97	2	388	55	0	4	39	1.22
51629479--51629569	23	3.7	25	76	13	100	56	0	4	39	1.20
51629364--51629559	50	3.8	50	86	10	293	55	0	5	39	1.22
51631921--51632016	27	3.5	27	70	14	72	67	3	2	27	1.16
51633403--51633493	43	2.1	43	87	2	130	35	10	9	43	1.73
51633810--51634230	43	9.8	42	86	1	493	23	16	30	28	1.96
51633810--51634210	129	3.1	128	87	3	556	22	16	31	29	1.96
51634614--51634689	19	3.7	19	73	22	64	53	0	1	44	1.08
51634627--51634694	28	2.5	25	76	21	66	54	0	1	44	1.09
51634709--51634733	12	2.1	12	100	0	50	24	0	32	44	1.54
51635016--51635055	9	4.4	9	87	9	55	67	0	30	2	1.04
51635425--51635458	17	1.9	18	88	5	52	41	0	23	35	1.55
51636787--51636838	26	2.0	26	96	0	95	32	3	32	30	1.76
51643804--51643838	17	2.0	17	88	5	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51643818--51643842	13	1.9	13	100	0	50	52	0	0	48	1.00
51645761--51645859	44	2.2	44	81	0	117	16	26	15	42	1.87
51647511--51647557	20	2.4	20	85	3	69	34	6	8	51	1.58
51648132--51648226	40	2.4	41	84	7	115	37	22	21	18	1.94
51648262--51648403	41	3.5	41	90	3	232	17	17	31	33	1.94
51648436--51648763	162	2.1	157	88	2	485	24	1	26	47	1.59
51649291--51649316	13	2.0	13	100	0	52	53	0	0	46	1.00
51649396--51650055	253	2.6	254	88	0	955	39	15	17	27	1.90
51650826--51651069	122	2.0	122	91	1	391	33	20	17	28	1.95
51652954--51653074	43	2.8	43	84	1	154	28	18	29	23	1.98
51653076--51653180	38	2.7	37	78	10	102	24	17	31	26	1.97
51661244--51661362	62	2.0	59	88	5	175	42	4	4	49	1.41
51671891--51671926	18	1.9	19	88	5	56	25	0	11	63	1.27
51674788--51674835	23	2.0	24	92	4	80	50	2	0	47	1.12
51674795--51674849	23	2.5	21	80	13	65	50	1	3	43	1.30
51674824--51674864	16	2.6	16	88	7	57	43	2	9	43	1.50
51674937--51674964	9	3.1	9	100	0	56	32	0	10	57	1.33
51674853--51675062	68	3.1	68	94	1	361	40	4	8	45	1.56
51675129--51675172	24	1.9	24	90	9	74	61	2	0	36	1.09
51679672--51679920	97	2.6	97	92	0	399	36	18	12	32	1.89
51685585--51685655	28	2.7	26	81	12	67	39	4	2	53	1.35
51686379--51686480	11	9.5	11	75	12	88	22	30	1	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51688322--51688364	18	2.4	18	88	0	59	18	27	9	44	1.80
51688620--51688669	21	2.4	22	80	16	61	30	42	24	4	1.73
51691488--51691565	39	2.0	39	92	0	129	21	25	21	30	1.98
51692038--51692582	126	4.3	126	95	0	914	25	22	20	31	1.98
51692619--51692938	91	3.4	92	86	3	399	37	18	3	40	1.66
51692735--51692876	46	3.1	45	67	17	130	34	17	2	45	1.63
51693351--51693395	21	2.0	23	91	8	76	66	4	4	24	1.29
51698654--51698744	46	2.0	46	91	0	146	23	19	26	30	1.98
51704512--51704536	13	1.9	13	100	0	50	40	24	4	32	1.73
51705426--51705549	42	3.0	41	88	8	173	29	28	16	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182