genome.fa.s21.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  177  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53873485--53873519	17	2.1	17	89	5	54	11	11	0	77	1.00
53877862--53877914	15	3.2	15	80	17	52	54	1	1	41	1.22
53877945--53877983	20	2.0	20	94	0	69	48	0	2	48	1.15
53878070--53878136	34	1.9	35	90	3	109	47	11	7	32	1.68
53878105--53878144	14	2.9	14	85	7	55	45	15	5	35	1.68
53883473--53883530	30	1.9	30	85	0	80	43	3	22	31	1.70
53883869--53884118	50	4.9	50	85	5	286	26	23	28	21	1.99
53884162--53885255	547	2.0	547	100	0	2188	34	10	19	34	1.87
53887102--53887185	13	6.1	14	67	23	54	50	2	3	44	1.32
53887105--53887172	27	2.5	27	85	7	93	51	2	2	42	1.32
53891762--53891845	13	6.1	14	67	23	54	50	2	3	44	1.32
53891765--53891832	27	2.5	27	85	7	93	51	2	2	42	1.32
53894406--53894455	20	2.4	21	90	6	75	36	4	0	60	1.16
53894406--53894455	21	2.4	20	86	6	64	36	4	0	60	1.16
53897067--53897112	18	2.6	18	82	3	58	39	10	2	47	1.51
53901426--53901483	29	2.0	29	83	6	73	44	1	3	50	1.29
53903045--53903117	36	2.0	36	100	0	146	50	13	2	32	1.56
53905845--53905876	15	2.1	15	94	0	55	59	0	0	40	0.97
53905829--53905887	26	2.3	25	82	8	66	54	0	1	44	1.10
53908320--53908389	36	1.9	36	88	0	104	20	25	17	37	1.94
53917709--53917785	19	4.2	19	69	11	61	66	1	2	29	1.13
53917725--53917763	18	2.3	18	86	8	55	61	0	2	35	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53917759--53917802	22	2.0	22	86	0	61	63	2	4	29	1.26
53918058--53918093	17	2.0	19	89	10	58	25	0	2	72	0.98
53918068--53918172	28	3.8	27	78	12	88	37	3	0	59	1.16
53930598--53930650	24	2.2	24	86	0	70	50	9	3	35	1.53
53934685--53934735	20	2.6	20	78	3	59	3	9	5	80	1.01
53946827--53946856	3	9.7	3	92	7	51	66	0	0	33	0.92
53947511--53947540	3	9.7	3	92	7	51	66	0	0	33	0.92
53946611--53947978	684	2.0	684	100	0	2736	30	12	19	36	1.89
53949446--53949486	21	2.0	21	90	0	64	48	21	17	12	1.79
53949476--53949532	21	2.7	21	80	0	78	43	21	19	15	1.87
53949448--53949586	42	3.3	42	79	6	129	45	19	19	15	1.86
53951590--53951648	19	3.1	19	72	13	57	62	3	3	30	1.28
53951666--53951719	21	2.8	20	81	15	60	68	0	7	24	1.15
53951958--53952035	19	4.1	18	72	20	52	32	5	1	61	1.26
53951925--53952026	28	3.5	29	74	11	84	34	2	0	61	1.17
53955374--53955408	18	1.9	18	88	0	52	17	11	8	62	1.52
53962886--53962922	17	2.1	18	90	5	58	45	2	2	48	1.30
53963343--53963410	31	2.1	33	83	5	86	35	7	10	47	1.66
53965558--53965616	19	3.1	19	85	11	68	33	1	6	57	1.35
53965581--53965617	18	2.0	19	94	5	67	32	0	10	56	1.34
53971204--53971260	4	14.2	4	92	0	96	24	3	24	47	1.68
53971616--53971667	24	2.2	24	85	0	68	61	3	1	32	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53971623--53971674	24	2.2	24	82	6	61	59	3	0	36	1.16
53975155--53975188	17	2.0	17	100	0	68	29	47	0	23	1.52
53976493--53976576	40	2.1	40	82	4	98	36	20	22	20	1.95
53976639--53976774	40	3.3	40	74	10	132	18	16	25	39	1.91
53976639--53976793	81	1.9	81	85	9	217	17	16	26	40	1.90
53977279--53977365	43	2.0	43	95	0	156	34	4	6	54	1.48
53977415--53977456	14	3.1	14	86	3	50	21	0	45	33	1.52
53977478--53977542	16	4.1	15	76	21	62	18	0	49	32	1.48
53977442--53977509	29	2.4	28	78	11	75	22	1	42	33	1.62
53977473--53977545	22	3.2	22	79	9	74	20	0	45	34	1.52
53977449--53977545	15	6.4	15	73	19	69	21	1	43	34	1.60
53979592--53979649	26	2.2	26	93	0	98	39	17	3	39	1.66
53980116--53980146	16	1.9	16	100	0	62	38	3	6	51	1.44
53980423--53980559	30	4.6	31	76	8	124	32	24	2	40	1.68
53980423--53980559	60	2.3	59	80	8	154	32	24	2	40	1.68
53980445--53980559	59	1.9	60	82	8	146	35	23	1	39	1.65
53980445--53980574	59	2.2	59	81	10	140	36	23	2	37	1.67
53980839--53980882	23	2.0	22	82	8	54	70	15	11	2	1.26
53981020--53981051	13	2.5	13	94	0	55	65	25	6	3	1.31
53981167--53981220	10	5.1	10	80	17	56	68	0	31	0	0.90
53981169--53981220	20	2.5	22	81	15	65	69	0	30	0	0.89
53981313--53981378	18	3.7	17	82	11	71	72	18	7	1	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53982051--53982094	16	2.7	16	82	3	52	29	6	15	47	1.72
53982036--53982199	42	4.6	34	73	16	89	28	11	12	47	1.76
53982036--53982657	17	32.7	18	68	20	263	30	11	12	46	1.76
53982118--53982166	25	2.0	25	87	0	71	26	12	16	44	1.82
53982231--53982637	152	2.7	151	91	4	653	32	10	11	45	1.75
53982431--53982490	19	3.1	19	79	15	77	38	6	11	43	1.68
53982431--53982655	18	11.9	18	69	16	100	32	11	12	44	1.76
53983905--53983986	42	2.0	42	92	0	137	34	19	20	25	1.96
53984424--53984450	12	2.2	12	100	0	54	0	40	18	40	1.51
53988163--53988193	9	3.4	9	90	0	53	25	12	22	38	1.90
53988326--53988382	29	1.9	30	89	3	89	17	45	0	36	1.49
53989158--53989235	40	2.0	39	87	2	111	34	20	16	28	1.94
53989075--53989386	115	2.7	115	92	1	511	38	18	16	25	1.92
53989425--53989880	115	4.0	112	82	3	435	31	23	17	27	1.97
53989425--53989880	230	2.0	229	79	3	495	31	23	17	27	1.97
53990401--53990451	21	2.4	21	86	0	75	41	43	1	13	1.55
53990454--53990496	16	2.8	15	83	13	52	46	23	2	27	1.64
53990754--53990783	10	3.0	10	95	0	51	30	6	0	63	1.20
53990957--53991279	113	2.8	113	90	1	486	31	25	19	23	1.98
53993096--53993163	21	3.2	21	82	0	82	36	19	41	2	1.66
53993629--53993816	43	4.4	43	90	4	267	25	25	20	29	1.99
53993649--53993812	85	1.9	86	90	3	260	23	24	20	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53993804--53993828	12	2.1	12	100	0	50	48	16	20	16	1.82
53993761--53993866	55	1.9	56	90	5	171	27	19	21	31	1.98
53998453--53998496	19	2.2	20	84	8	54	29	4	0	65	1.12
54001488--54001526	20	1.9	21	84	5	53	51	7	7	33	1.59
54003068--54003142	32	2.3	32	86	8	100	16	14	28	41	1.87
54012378--54012419	16	2.7	16	88	3	59	57	4	2	35	1.33
54012389--54012423	16	2.2	16	89	0	52	57	11	0	31	1.34
54019442--54019481	13	2.7	16	74	22	50	55	0	0	45	0.99
54019930--54020008	23	3.5	23	89	5	117	35	0	0	64	0.94
54019930--54020006	22	3.5	21	84	7	82	35	0	0	64	0.93
54019945--54020035	21	4.2	22	83	4	80	31	1	0	67	0.98
54019936--54020029	23	4.2	22	87	5	66	32	1	0	65	0.99
54020714--54020781	10	6.3	10	76	18	57	73	4	19	2	1.13
54020712--54020781	12	5.8	11	74	21	52	74	4	18	2	1.11
54021617--54021710	41	2.3	40	87	1	125	26	17	22	34	1.96
54027448--54027524	37	2.1	36	80	9	84	38	12	7	40	1.73
54027488--54027583	17	5.6	17	72	11	72	47	12	12	27	1.77
54027578--54027616	17	2.2	18	90	4	62	43	5	5	46	1.48
54027643--54027693	17	3.0	16	83	13	59	52	9	9	27	1.65
54027487--54027719	18	12.6	18	70	15	93	47	10	11	30	1.72
54027652--54027718	17	3.8	17	83	13	73	52	8	10	28	1.66
54027891--54027937	20	2.5	19	77	16	53	44	8	17	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54028298--54028393	8	12.0	8	76	12	99	0	19	0	80	0.72
54028295--54028391	15	6.5	15	81	5	108	0	19	0	80	0.71
54028295--54028393	23	4.5	22	77	13	96	0	20	0	79	0.73
54028506--54028546	15	2.6	16	84	7	57	0	14	17	68	1.22
54029060--54029176	30	3.9	29	77	11	94	44	3	22	29	1.69
54029075--54029176	30	3.4	30	84	2	134	44	3	22	29	1.71
54029447--54029664	54	4.1	55	88	8	324	37	17	16	28	1.92
54029643--54029677	14	2.5	14	90	0	52	60	2	17	20	1.49
54029766--54030013	85	2.8	87	81	10	299	36	18	18	26	1.94
54029926--54029959	16	2.1	16	88	0	50	64	5	11	17	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182