genome.fa.s21.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  144  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44313850--44314243	39	10.1	39	79	0	358	17	19	29	33	1.95
44321080--44321130	17	3.1	17	74	20	54	37	0	15	47	1.46
44321440--44321867	39	11.0	39	85	3	531	16	18	30	34	1.93
44325507--44325546	18	2.4	16	91	8	62	22	5	2	70	1.19
44327647--44327702	22	2.5	22	85	0	67	35	7	23	33	1.82
44328915--44328952	19	2.0	19	100	0	76	42	10	10	36	1.74
44332771--44332795	13	1.9	13	100	0	50	24	8	20	48	1.76
44333098--44333240	61	2.4	60	84	11	186	41	0	1	55	1.13
44333893--44333918	12	2.2	12	100	0	52	15	15	23	46	1.83
44333924--44334019	39	2.4	40	89	5	142	42	23	16	16	1.88
44334053--44334218	41	4.0	41	80	3	190	23	18	28	29	1.98
44334059--44334243	41	4.5	41	77	6	167	24	18	25	31	1.97
44334057--44334243	82	2.3	82	78	2	187	24	18	25	31	1.98
44335358--44335417	7	8.7	7	77	3	50	18	1	40	40	1.60
44335830--44335877	24	2.0	25	83	4	62	35	4	2	58	1.29
44336099--44336185	41	2.1	41	91	0	138	31	16	16	36	1.90
44339865--44340020	43	3.6	43	88	1	215	23	17	28	30	1.97
44348708--44348849	27	5.3	27	81	8	184	19	19	20	40	1.91
44348708--44348849	54	2.7	53	90	2	232	19	19	20	40	1.91
44349771--44349852	34	2.3	37	81	10	100	56	8	28	7	1.56
44349762--44349852	37	2.5	36	75	15	98	54	8	27	8	1.60
44356070--44356148	28	3.0	28	81	7	94	29	20	24	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44356501--44356698	27	7.3	27	80	5	204	21	17	19	41	1.90
44356503--44356698	54	3.6	55	81	8	233	21	17	19	41	1.90
44356501--44356698	81	2.4	81	84	1	254	21	17	19	41	1.90
44357663--44357725	27	2.3	27	88	0	90	50	9	30	9	1.66
44358382--44358530	35	4.2	35	89	0	208	39	30	16	14	1.87
44360104--44360150	18	2.5	19	79	3	51	65	2	8	23	1.31
44364296--44364369	36	2.1	36	89	0	112	24	18	14	41	1.89
44366570--44366634	20	3.3	20	64	20	55	49	9	26	15	1.74
44366558--44366636	39	2.0	39	92	0	131	50	8	22	17	1.74
44368143--44368255	54	2.1	54	95	3	201	37	11	14	37	1.82
44380596--44380643	20	2.3	22	85	7	64	54	12	0	33	1.38
44392144--44392321	27	6.6	26	79	7	142	26	15	27	30	1.96
44392144--44392321	54	3.3	54	76	10	166	26	15	27	30	1.96
44392172--44392321	55	2.8	54	83	4	167	27	15	28	28	1.96
44392145--44392300	82	1.9	81	84	6	208	26	16	27	30	1.96
44392141--44392321	82	2.2	81	80	4	204	26	16	27	30	1.96
44392226--44392332	27	3.9	27	85	1	70	26	14	28	30	1.95
44394173--44394201	12	2.4	12	100	0	58	37	6	0	55	1.27
44405667--44405853	92	2.0	92	98	0	365	44	27	7	20	1.78
44406302--44406369	20	3.5	20	77	2	57	23	23	0	52	1.47
44407721--44407750	12	2.5	12	94	0	51	40	16	13	30	1.87
44411402--44411477	20	3.8	20	87	1	91	23	27	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44411415--44411447	15	2.1	16	88	5	50	21	27	0	51	1.48
44414863--44414896	6	5.3	6	86	13	50	64	2	2	29	1.22
44425217--44425324	15	7.2	15	67	12	78	44	7	22	25	1.79
44425211--44425334	30	4.1	30	93	1	203	43	6	24	25	1.78
44426775--44427723	474	2.0	474	95	0	1702	31	16	25	26	1.96
44430384--44430491	15	7.2	15	67	12	78	44	7	22	25	1.79
44430378--44430501	30	4.1	30	93	1	203	43	6	24	25	1.78
44431595--44431792	40	5.0	40	81	7	197	35	18	25	20	1.95
44431632--44431736	20	5.2	20	65	4	68	36	19	27	17	1.94
44431595--44431792	80	2.5	79	79	2	227	35	18	25	20	1.95
44434104--44434151	23	2.0	25	84	8	64	64	0	10	25	1.25
44438004--44438044	21	2.0	21	95	0	73	24	21	29	24	1.99
44438464--44438489	11	2.4	11	100	0	52	80	11	0	7	0.89
44440317--44440349	17	1.9	17	93	0	57	66	9	3	21	1.33
44457122--44457176	23	2.2	24	84	15	76	25	10	7	56	1.59
44457638--44457664	13	2.1	13	100	0	54	37	14	0	48	1.45
44459072--44459171	41	2.5	40	85	4	121	22	23	10	45	1.82
44465822--44465885	23	2.8	23	83	4	76	35	14	20	29	1.92
44465916--44465967	22	2.4	22	90	3	79	42	15	17	25	1.88
44468275--44468340	29	2.2	29	81	10	71	31	6	3	59	1.37
44468748--44468783	18	2.0	18	88	0	54	44	2	0	52	1.15
44468891--44468939	10	5.0	10	77	2	55	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44468884--44468922	20	2.0	20	89	0	60	69	0	0	30	0.89
44474075--44474153	21	3.7	22	85	8	110	39	25	18	16	1.91
44474075--44474156	44	1.9	41	87	7	119	40	24	18	17	1.91
44475132--44475162	16	1.9	16	93	0	53	0	25	0	74	0.82
44475362--44475389	5	5.6	5	100	0	56	60	0	0	39	0.97
44485697--44485829	69	1.9	69	90	1	214	40	3	6	49	1.45
44485729--44485832	32	3.1	32	68	13	75	40	2	7	49	1.46
44486127--44486253	65	2.0	65	95	0	227	38	12	14	34	1.84
44490755--44490793	18	2.2	17	86	13	53	33	0	20	46	1.51
44491005--44491080	23	3.3	23	96	0	143	23	21	26	28	1.99
44495030--44495060	16	1.9	16	93	0	53	38	0	0	61	0.96
44497106--44497168	19	3.1	19	77	9	63	50	3	0	46	1.17
44498719--44498769	24	2.1	25	85	3	68	23	9	5	60	1.50
44499683--44499707	13	1.9	13	100	0	50	8	0	24	68	1.16
44501034--44501175	75	1.9	75	80	2	169	29	7	20	42	1.80
44501491--44501602	41	2.7	42	86	9	158	28	20	21	29	1.98
44501820--44501980	33	4.6	33	81	14	173	32	8	24	34	1.86
44501818--44501980	39	4.6	37	85	10	193	33	8	23	34	1.86
44507352--44507376	13	1.9	13	100	0	50	8	0	24	68	1.16
44509164--44509275	41	2.7	42	85	9	149	29	19	21	29	1.98
44509493--44509653	33	4.6	33	83	14	182	32	9	24	33	1.87
44509491--44509653	39	4.6	37	86	10	202	33	9	23	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44514833--44515112	138	2.0	138	90	2	438	47	5	6	41	1.50
44517055--44517117	27	2.3	27	94	0	108	33	23	30	12	1.92
44517116--44517246	19	6.6	19	67	22	81	32	0	12	54	1.37
44517187--44517246	19	3.0	20	87	7	95	31	0	13	55	1.39
44517467--44517515	21	2.3	21	92	3	80	59	10	0	30	1.31
44517549--44517586	19	1.9	19	89	5	58	57	7	0	34	1.28
44517585--44517651	27	2.5	27	90	0	107	14	32	20	31	1.93
44517585--44517659	27	2.8	28	84	10	102	17	32	20	30	1.95
44517712--44517765	12	4.2	13	73	21	60	64	0	0	35	0.94
44519959--44520009	23	2.2	24	85	3	68	9	23	31	35	1.87
44519965--44520017	24	2.3	22	81	12	61	11	24	32	32	1.91
44526737--44526783	23	2.0	23	91	0	76	40	10	19	29	1.85
44552895--44553029	3	45.0	3	67	11	71	27	4	5	62	1.35
44560367--44560422	17	3.2	17	85	9	76	39	16	7	37	1.76
44563229--44563288	17	3.4	17	75	11	50	58	1	5	35	1.30
44563246--44563964	308	2.4	305	79	6	719	46	9	11	32	1.72
44576671--44576753	41	2.0	41	95	0	148	16	39	12	31	1.85
44581571--44581638	31	2.4	27	81	13	82	42	4	5	47	1.48
44587806--44587843	18	2.1	18	95	0	67	10	23	10	55	1.65
44590465--44590490	2	13.0	2	100	0	52	0	50	0	50	1.00
44599323--44599432	30	3.7	30	78	9	111	32	12	6	48	1.67
44599820--44599871	6	8.8	6	75	12	54	78	0	21	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44599822--44599871	17	3.0	17	72	13	50	78	0	22	0	0.76
44600250--44600354	14	7.1	15	73	14	58	79	2	18	0	0.86
44600254--44600354	9	10.6	10	76	14	74	80	2	16	0	0.84
44600252--44600363	24	4.6	23	75	17	84	78	2	18	0	0.87
44600272--44600349	21	3.7	21	77	20	74	83	3	12	0	0.78
44600272--44600349	27	2.8	29	83	9	83	83	3	12	0	0.78
44600268--44600353	29	2.8	30	76	15	88	81	3	15	0	0.82
44600323--44600362	11	3.3	13	80	16	50	80	0	20	0	0.72
44600252--44600354	11	9.5	11	76	18	76	79	2	17	0	0.85
44600515--44600561	16	2.9	16	81	12	60	36	2	0	61	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182