genome.fa.s21.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  9  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2775428--2775453	6	4.3	6	100	0	52	15	0	0	84	0.62
2780571--2780633	32	2.0	32	96	3	119	31	6	12	49	1.66
2788488--2788831	50	6.9	50	84	0	384	22	28	20	27	1.99
2788487--2788884	50	7.9	50	81	5	333	23	27	20	28	1.99
2790254--2790560	27	11.4	27	86	0	391	41	21	18	17	1.90
2795147--2795198	21	2.5	19	80	17	59	26	5	7	59	1.48
2799987--2800026	21	1.9	21	84	0	53	47	0	30	22	1.52
2807918--2808428	218	2.3	219	84	4	658	30	17	23	28	1.97
2809439--2809472	17	2.0	17	88	11	52	70	5	0	23	1.09
2811700--2811950	125	2.0	125	96	0	457	24	11	25	38	1.90
2812668--2812864	98	2.0	98	93	2	333	23	17	27	30	1.97
2812795--2812900	40	2.6	41	88	5	155	22	22	27	27	1.99
2818833--2818957	39	3.2	39	77	0	133	45	20	4	29	1.71
2827936--2827966	11	2.7	11	95	5	53	58	22	0	19	1.40
2831125--2831454	114	2.9	114	89	1	518	34	14	23	27	1.93
2838046--2838079	16	2.1	17	94	5	61	35	17	5	41	1.74
2846892--2846929	19	2.0	19	89	0	58	60	26	2	10	1.43
2856561--2856685	39	3.2	39	77	0	133	45	20	4	29	1.71
2865664--2865694	11	2.7	11	95	5	53	58	22	0	19	1.40
2868853--2869182	114	2.9	114	89	1	518	34	14	23	27	1.93
2875774--2875807	16	2.1	17	94	5	61	35	17	5	41	1.74
2884620--2884657	19	2.0	19	89	0	58	60	26	2	10	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2893073--2893105	17	1.9	17	93	0	57	63	18	0	18	1.31
2895487--2895511	13	1.9	13	100	0	50	36	32	0	32	1.58
2897039--2897074	13	2.8	13	100	0	72	22	22	30	25	1.99
2905452--2905712	57	4.5	56	80	6	229	39	14	25	21	1.91
2905484--2905712	29	7.9	28	85	5	280	39	13	25	20	1.90
2905484--2905712	86	2.6	86	90	2	343	39	13	25	20	1.90
2909745--2909979	50	4.7	50	92	0	380	25	22	31	20	1.98
2913243--2913419	51	3.5	51	80	3	180	25	17	25	30	1.97
2913428--2913516	45	2.0	45	95	0	160	24	15	26	32	1.96
2918083--2918147	30	2.2	30	97	0	121	24	3	15	56	1.53
2921037--2921312	43	6.4	43	75	7	179	27	28	19	24	1.99
2921638--2921686	21	2.3	21	79	6	55	6	42	16	34	1.73
2921662--2921824	66	2.5	66	84	4	204	14	26	19	40	1.89
2926980--2927069	42	2.1	41	82	8	101	32	4	13	50	1.61
2927035--2927090	9	6.8	9	73	19	59	35	0	16	48	1.46
2927032--2927081	16	3.2	16	94	2	84	36	0	16	48	1.46
2927035--2927141	43	2.7	40	80	12	121	39	0	12	47	1.47
2927737--2927772	15	2.5	15	90	4	56	63	8	16	11	1.49
2944999--2945212	41	5.2	41	77	5	209	29	26	25	18	1.98
2944999--2945212	82	2.6	80	78	7	232	29	26	25	18	1.98
2951106--2951287	91	2.0	91	95	0	328	34	23	18	24	1.96
2960716--2960785	35	2.0	35	97	0	131	31	18	11	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2973082--2973347	28	9.5	28	95	0	453	34	26	11	27	1.91
2977793--2977842	20	2.5	20	81	12	66	16	24	2	58	1.49
2988697--2988742	21	2.3	20	78	14	51	30	6	17	45	1.73
3011001--3011061	25	2.4	25	83	0	77	39	19	14	26	1.90
3020777--3020872	25	3.8	25	72	15	72	23	20	22	32	1.98
3025901--3026017	28	4.2	28	92	1	173	34	24	17	23	1.96
3026373--3026550	27	6.6	27	81	8	123	23	12	17	46	1.83
3026380--3026550	54	3.2	53	80	8	177	22	13	17	46	1.82
3026380--3026550	81	2.1	81	84	4	229	22	13	17	46	1.82
3027960--3027986	14	1.9	14	100	0	54	14	22	14	48	1.81
3044375--3044401	14	1.9	14	100	0	54	37	22	25	14	1.93
3056622--3056905	40	7.1	41	86	5	345	25	22	27	24	2.00
3056623--3056919	159	1.9	159	83	5	395	26	22	26	24	2.00
3060853--3060898	21	2.3	20	78	14	51	30	6	17	45	1.73
3063759--3063930	50	3.5	50	77	4	161	29	24	26	20	1.99
3071079--3071200	50	2.4	50	83	0	145	28	21	27	22	1.99
3081925--3081968	22	2.0	22	81	0	52	47	27	2	22	1.63
3082483--3082586	50	2.1	49	81	10	115	31	21	4	42	1.74
3089797--3089914	41	2.9	41	80	13	127	34	16	27	22	1.95
3090908--3091178	132	2.0	133	98	1	535	38	18	10	32	1.85
3099924--3100199	145	1.9	145	96	0	507	30	23	15	30	1.96
3100180--3100247	29	2.3	29	85	5	93	27	30	13	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3100037--3100396	174	2.1	174	97	0	684	30	25	15	29	1.95
3100349--3100427	29	2.7	30	82	13	110	30	30	13	25	1.94
3103151--3103373	40	5.6	40	89	2	281	22	19	28	28	1.98
3103151--3103408	80	3.2	80	84	2	234	24	19	28	27	1.99
3109856--3109914	24	2.4	25	82	5	75	35	15	22	27	1.94
3112870--3112930	30	2.0	30	87	0	86	39	6	22	31	1.80
3113304--3113334	15	2.1	15	100	0	62	32	12	12	41	1.81
3115136--3115236	51	2.0	51	96	0	184	18	18	20	41	1.90
3123059--3123212	28	5.5	28	97	0	274	33	28	11	25	1.91
3123059--3123237	56	3.2	56	91	1	279	34	28	11	25	1.91
3126464--3126520	25	2.3	25	79	11	64	38	3	0	57	1.16
3129421--3129466	21	2.3	20	78	14	51	26	8	19	45	1.79
3131244--3131298	24	2.3	24	96	0	101	10	32	21	34	1.89
3137541--3137597	22	2.6	22	86	5	71	40	17	15	26	1.90
3140853--3141062	40	5.2	40	86	2	253	26	27	21	23	1.99
3140853--3141062	80	2.6	80	87	3	289	26	27	21	23	1.99
3141368--3141446	29	2.7	29	86	5	106	27	32	15	24	1.95
3156218--3156308	24	3.8	24	82	1	103	45	24	18	12	1.83
3156218--3156277	23	2.6	23	86	2	84	46	26	16	10	1.78
3157500--3157568	22	3.1	22	85	0	93	42	21	26	10	1.84
3157508--3157575	22	3.1	22	84	0	91	39	22	27	10	1.86
3157536--3157605	22	3.1	22	83	8	70	41	20	27	11	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3157508--3157595	44	2.0	44	82	4	106	40	20	27	11	1.86
3159269--3159311	19	2.3	19	95	0	77	18	27	9	44	1.80
3159732--3159801	33	2.1	33	91	0	113	37	14	8	40	1.76
3160687--3160713	3	9.0	3	100	0	54	33	0	0	66	0.92
3160729--3160788	24	2.5	24	79	12	61	35	5	6	53	1.49
3160895--3160998	49	2.1	49	98	1	201	25	3	13	56	1.54
3164556--3164605	22	2.3	23	80	16	61	62	0	0	38	0.96
3185507--3185769	71	3.7	71	77	5	187	21	17	23	37	1.94
3185541--3186094	71	7.9	71	73	9	365	20	18	22	37	1.94
3185643--3186106	138	3.3	134	77	8	446	20	19	22	37	1.95
3185643--3186138	69	7.1	69	72	11	300	20	19	21	37	1.95
3188430--3188600	45	3.8	45	83	6	206	38	24	12	24	1.91
3191346--3191386	18	2.3	18	84	12	50	41	17	2	39	1.62
3196721--3196759	6	6.5	6	93	0	69	69	0	30	0	0.89
3204845--3205118	137	2.0	137	82	2	336	30	26	19	23	1.98
3207328--3207601	35	8.1	34	84	6	326	41	17	22	18	1.90
3207328--3207601	67	4.0	66	88	4	327	41	17	22	18	1.90
3207338--3207601	102	2.6	102	92	1	417	40	18	23	18	1.91
3212029--3212940	469	1.9	469	89	2	1393	24	16	25	33	1.96
3214934--3214979	22	2.1	22	100	0	92	28	4	19	47	1.68
3226322--3226379	4	14.5	4	78	7	55	50	1	22	25	1.59
3237123--3237542	149	2.8	148	84	7	519	42	4	10	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3238130--3238163	10	3.5	10	84	8	52	17	2	0	79	0.86
3238137--3238176	16	2.6	16	88	4	55	17	7	2	72	1.19
3238905--3238934	3	10.0	3	100	0	60	66	0	0	33	0.92
3239587--3239636	20	2.3	20	80	10	55	26	4	14	56	1.56
3240210--3240248	19	1.9	19	85	10	51	17	12	2	66	1.35
3251303--3251469	91	1.8	90	81	6	203	31	7	14	46	1.73
3256588--3256672	42	2.0	42	95	0	152	42	10	8	38	1.69
3258230--3258275	23	2.0	22	83	4	56	43	2	13	41	1.55
3266922--3267021	49	2.0	49	100	0	200	31	12	19	38	1.88
3269291--3269339	25	1.9	26	84	12	66	51	6	0	42	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182