genome.fa.s21.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  52  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16214503--16214543	21	2.0	21	85	4	57	36	41	2	19	1.65
16215437--16215634	41	4.8	41	84	5	240	33	26	20	19	1.97
16215673--16215826	40	3.8	39	82	6	157	22	20	18	37	1.94
16216705--16216823	42	2.8	42	93	0	202	33	21	21	23	1.97
16216710--16217081	84	4.4	83	81	3	368	26	21	19	32	1.97
16216754--16217079	126	2.6	126	83	2	404	25	21	19	33	1.97
16216794--16217082	42	6.9	42	86	3	384	23	21	19	34	1.96
16217398--16217463	21	3.2	21	77	16	75	3	48	16	31	1.62
16219297--16219330	9	3.8	9	88	11	52	32	5	23	38	1.79
16219278--16219747	27	17.6	27	83	7	482	32	1	15	50	1.53
16219278--16219747	36	13.2	36	83	7	469	32	1	15	50	1.53
16219315--16219754	63	7.0	62	88	3	612	32	0	15	51	1.50
16223206--16223240	14	2.4	15	90	4	54	42	37	0	20	1.52
16224154--16224693	115	4.7	112	73	9	412	26	22	18	32	1.97
16229853--16229965	61	1.9	58	87	5	163	41	3	4	50	1.39
16234713--16234803	39	2.4	37	78	7	85	26	28	24	20	1.99
16234971--16235016	23	2.0	24	82	4	58	32	26	0	41	1.56
16235811--16235848	19	2.0	20	84	5	51	0	23	0	76	0.79
16236384--16236430	17	2.8	17	78	9	53	48	4	0	46	1.21
16237849--16237923	37	2.0	37	100	0	150	18	13	21	46	1.83
16241576--16241603	7	4.0	7	100	0	56	28	14	14	42	1.84
16244389--16244658	113	2.4	113	81	4	285	32	19	8	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16246519--16246595	36	2.3	32	76	18	84	40	16	23	19	1.91
16255508--16255563	26	2.2	26	83	0	67	28	25	23	23	1.99
16259063--16259191	43	3.0	43	77	6	145	24	18	27	30	1.98
16262506--16262555	24	2.0	26	81	18	61	18	30	8	44	1.78
16263376--16263400	8	3.1	8	100	0	50	76	0	0	24	0.80
16267460--16267486	13	2.1	13	100	0	54	22	22	18	37	1.95
16270649--16270710	28	2.2	29	86	13	94	67	3	1	27	1.15
16270640--16270709	28	2.4	29	83	11	90	70	4	1	24	1.14
16281858--16281924	34	2.0	34	100	0	134	35	20	0	43	1.53
16282868--16283012	43	3.4	43	100	0	290	21	37	16	24	1.94
16283142--16283209	29	2.3	29	85	5	93	27	30	13	27	1.94
16282999--16283358	174	2.1	174	97	0	675	29	25	15	28	1.96
16283311--16283389	29	2.7	30	78	13	101	29	29	15	26	1.96
16288149--16288201	27	2.0	27	92	0	88	43	18	11	26	1.84
16288607--16288653	25	1.9	24	82	4	58	55	6	6	31	1.51
16289155--16289198	20	2.2	20	84	8	54	45	6	2	45	1.42
16289143--16289568	156	2.8	154	83	7	506	42	8	3	44	1.53
16289466--16289508	20	2.2	20	86	0	59	48	4	0	46	1.22
16291495--16291625	28	4.7	28	84	0	156	36	12	23	26	1.91
16291495--16291625	56	2.4	56	88	1	183	36	12	23	26	1.91
16293210--16293243	17	2.0	17	88	0	50	41	0	0	58	0.98
16295004--16295044	18	2.3	18	100	0	82	24	29	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16298186--16298214	15	1.9	15	100	0	58	13	0	37	48	1.43
16302682--16302728	15	3.0	15	76	17	51	29	2	2	65	1.15
16306519--16306696	27	6.6	27	84	3	205	29	28	15	26	1.96
16306540--16306695	82	1.9	81	88	3	233	29	28	15	26	1.96
16312734--16312790	30	1.9	30	82	7	71	19	42	1	36	1.62
16313142--16313221	38	2.2	37	82	8	92	41	8	1	48	1.42
16313182--16313215	17	1.9	18	94	5	61	41	2	0	55	1.15
16313709--16313892	43	4.3	42	79	5	181	33	29	14	22	1.94
16323130--16323477	41	8.5	41	84	1	419	18	24	27	28	1.98
16323855--16323887	14	2.3	15	94	5	59	30	0	33	36	1.58
16323919--16324020	7	14.1	7	75	6	60	21	0	44	34	1.53
16323969--16324025	22	2.6	22	86	5	71	21	0	43	35	1.52
16324692--16324747	16	3.5	16	76	7	60	64	3	7	25	1.35
16325063--16325108	24	2.0	24	86	4	67	26	43	2	28	1.66
16326507--16326548	22	1.9	22	90	0	66	47	11	0	40	1.40
16326818--16327043	25	9.1	25	91	1	341	48	17	0	34	1.48
16332582--16332618	19	1.9	19	94	0	65	27	10	2	59	1.44
16332801--16333025	43	5.2	43	80	3	220	24	17	30	27	1.97
16339808--16339858	21	2.4	22	80	3	59	72	0	25	1	0.95
16343604--16343654	21	2.4	22	80	3	59	72	0	25	1	0.95
16347609--16347658	18	2.8	17	80	19	57	28	4	2	66	1.21
16347673--16347709	19	2.0	19	94	5	67	35	0	5	59	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16347673--16347726	19	2.9	18	86	8	65	40	0	3	55	1.17
16347647--16347726	19	4.6	18	74	14	60	43	0	2	53	1.14
16347803--16347841	18	2.2	18	90	0	60	30	7	7	53	1.57
16348294--16348514	111	2.0	111	90	0	352	32	15	17	33	1.92
16350351--16350383	17	1.9	17	88	11	50	18	0	6	75	1.00
16355963--16355998	6	6.0	6	96	0	54	33	0	11	55	1.35
16357987--16358045	20	2.8	20	77	10	57	62	1	0	35	1.05
16375422--16375458	16	2.2	18	85	9	51	37	2	18	40	1.65
16396438--16396701	70	3.8	70	80	4	248	38	23	18	18	1.93
16396503--16396701	70	2.9	69	84	5	249	38	24	19	18	1.93
16429754--16429794	21	2.0	21	90	0	64	17	24	14	43	1.86
16430775--16430809	13	2.6	14	86	9	54	51	14	11	22	1.74
16434318--16434348	16	1.9	16	93	0	53	41	9	0	48	1.36
16445322--16445388	20	3.3	20	80	11	84	14	26	16	41	1.87
16445332--16445397	20	3.3	20	76	0	69	16	28	16	37	1.91
16453715--16453742	6	4.7	6	100	0	56	46	0	0	53	1.00
16455007--16455381	123	3.0	124	89	4	567	29	16	21	32	1.95
16457944--16458160	23	9.6	23	80	12	252	28	0	25	45	1.57
16458007--16458083	21	3.6	21	72	19	77	20	0	37	41	1.53
16457944--16458152	44	4.7	44	86	6	253	27	0	25	45	1.57
16457944--16458160	67	3.2	66	76	15	228	28	0	25	45	1.57
16458191--16458232	9	4.8	9	85	2	59	52	9	0	38	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16458230--16458347	25	4.9	25	75	14	131	44	13	0	41	1.44
16458224--16458357	70	1.9	71	98	1	261	47	12	0	39	1.42
16458776--16458815	18	2.2	18	95	0	71	40	7	30	22	1.81
16459467--16459491	7	3.6	7	100	0	50	56	16	0	28	1.41
16462085--16462157	22	3.4	22	70	14	62	34	4	2	58	1.31
16462520--16462554	17	2.1	17	89	10	54	20	2	5	71	1.19
16471228--16471280	13	4.1	13	90	0	88	26	9	26	37	1.87
16472542--16472590	20	2.5	19	80	6	62	65	6	14	14	1.45
16474645--16474689	6	7.5	6	97	0	81	20	0	13	66	1.24
16474723--16474772	26	1.9	26	84	8	66	36	6	6	52	1.51
16474730--16474783	24	2.2	25	77	9	67	37	3	3	55	1.35
16474855--16474923	26	2.5	27	81	6	77	40	14	1	43	1.54
16475062--16475095	17	1.9	18	88	5	52	41	8	0	50	1.34
16476076--16476109	16	2.1	16	88	0	50	50	14	17	17	1.79
16478911--16478951	21	2.0	21	90	0	64	29	21	29	19	1.98
16480857--16480890	16	2.1	16	88	0	50	50	14	17	17	1.79
16483692--16483732	21	2.0	21	90	0	64	29	21	29	19	1.98
16485638--16485671	16	2.1	16	88	0	50	50	14	17	17	1.79
16497247--16497281	17	2.1	16	94	5	61	28	11	5	54	1.59
16502732--16502804	34	2.1	34	85	5	94	4	4	26	65	1.28
16502870--16502896	12	2.2	12	100	0	54	29	0	0	70	0.88
16502985--16503051	21	3.0	22	75	22	68	28	0	5	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16503044--16503084	13	3.2	13	82	0	55	60	2	0	36	1.10
16507074--16507241	51	3.3	51	91	3	259	32	15	25	26	1.95
16510607--16510642	16	2.2	16	100	0	72	25	0	36	38	1.56
16510623--16510713	45	2.0	45	85	2	121	27	6	28	37	1.82
16513421--16513461	15	2.6	17	77	14	52	56	0	2	41	1.13
16515339--16515387	21	2.3	22	85	3	64	40	22	14	22	1.90
16515554--16515607	26	2.1	26	100	0	108	35	18	3	42	1.68
16517196--16517248	11	4.7	11	75	11	54	43	3	0	52	1.19
16520422--16520528	25	4.3	24	79	13	101	34	20	28	15	1.94
16520411--16520526	50	2.3	50	85	7	148	34	21	29	14	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182