genome.fa.s21.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  120  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36905085--36905200	43	2.7	43	87	0	169	26	26	13	32	1.94
36906977--36907011	17	2.0	18	88	5	54	60	0	0	40	0.97
36907537--36907716	33	5.4	33	70	8	114	28	24	16	31	1.96
36907489--36907742	101	2.5	101	85	3	327	27	25	16	30	1.97
36911044--36911111	30	2.2	31	84	2	84	26	17	7	48	1.73
36920305--36920347	21	2.0	22	90	4	70	69	11	4	13	1.33
36932169--36932346	27	6.6	27	84	3	205	29	28	15	26	1.96
36932190--36932345	82	1.9	81	88	3	233	29	28	15	26	1.96
36940232--36940409	27	6.6	27	84	3	205	29	28	15	26	1.96
36940253--36940408	82	1.9	81	88	3	233	29	28	15	26	1.96
36961726--36961795	26	2.7	26	79	0	86	24	11	18	45	1.82
36975895--36976077	40	4.6	39	81	6	170	24	20	27	26	1.99
36975931--36976112	79	2.3	80	76	7	183	26	19	27	26	1.99
36987724--36987923	92	2.2	92	79	8	212	28	14	14	43	1.84
36993498--36993540	22	2.0	21	81	4	50	44	0	16	39	1.48
36997766--36997827	20	3.1	20	77	13	65	45	11	9	33	1.73
37017593--37017713	42	2.9	42	72	9	102	19	25	16	38	1.93
37022633--37022661	15	1.9	15	100	0	58	41	20	17	20	1.90
37029539--37029571	17	1.9	17	93	0	57	33	12	24	30	1.91
37031606--37031783	27	6.6	27	84	3	205	29	28	15	26	1.96
37031627--37031782	82	1.9	81	88	3	233	29	28	15	26	1.96
37039796--37039973	27	6.6	27	84	3	205	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37039817--37039972	82	1.9	81	88	3	233	29	28	15	26	1.96
37043191--37043225	18	1.9	18	88	0	52	54	2	2	40	1.30
37043575--37043621	22	2.1	22	92	0	76	17	2	12	68	1.31
37043587--37043698	11	9.8	11	67	7	62	25	1	6	66	1.24
37057332--37057392	19	3.2	19	78	2	59	54	1	4	39	1.32
37057874--37057935	21	3.2	20	75	13	65	58	4	6	30	1.44
37059654--37059827	88	2.0	87	90	1	276	29	25	18	27	1.98
37060010--37060432	87	4.9	87	70	10	256	26	23	20	29	1.99
37060004--37060476	44	10.8	43	70	10	255	26	24	19	30	1.98
37059774--37060479	131	5.4	131	89	2	1013	25	24	19	29	1.98
37061826--37061881	6	9.0	6	79	12	51	1	16	0	82	0.76
37061833--37061901	22	3.2	21	78	11	61	1	10	4	84	0.83
37061827--37061881	24	2.2	26	87	6	78	1	14	0	83	0.73
37061826--37061895	32	2.2	32	82	10	81	1	12	4	81	0.90
37066883--37066994	29	3.9	30	71	12	83	61	2	7	28	1.36
37066891--37066941	21	2.5	20	84	12	61	64	0	3	31	1.11
37079818--37079883	25	2.6	25	90	4	98	24	22	1	51	1.57
37079951--37080254	126	2.4	126	85	3	407	26	17	18	37	1.93
37080934--37080992	29	2.0	30	83	9	77	47	15	6	30	1.71
37089994--37090214	50	4.4	50	89	2	318	25	21	30	22	1.98
37090498--37090536	20	2.0	20	89	0	60	53	2	25	17	1.56
37092795--37092822	9	3.1	9	100	0	56	53	0	25	21	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37096012--37096266	133	1.9	133	100	0	510	24	18	15	41	1.89
37096919--37097109	50	3.8	50	85	1	249	25	21	29	22	1.99
37096923--37097148	99	2.3	97	78	4	238	26	22	27	23	1.99
37099026--37099073	25	1.9	25	82	0	60	20	2	4	72	1.11
37111891--37111992	44	2.3	44	86	3	141	32	19	8	39	1.83
37115076--37115133	22	2.6	22	81	7	64	41	17	5	36	1.72
37115557--37115836	131	2.1	133	88	5	417	25	25	18	29	1.98
37115893--37116025	45	3.0	44	74	12	137	27	23	19	30	1.98
37115830--37116384	89	6.2	89	86	0	644	26	22	21	29	1.99
37115973--37116365	44	8.8	45	67	10	207	26	22	22	28	1.99
37116450--37116553	51	2.0	51	88	0	154	28	22	17	31	1.96
37116501--37117039	134	3.9	143	77	10	408	26	23	20	29	1.98
37116652--37117308	45	14.8	44	76	6	454	26	23	19	30	1.98
37116677--37117310	134	4.7	132	78	7	627	26	23	19	31	1.98
37116704--37117310	178	3.4	177	83	6	701	26	23	19	30	1.98
37116534--37117304	223	3.4	223	79	6	646	26	23	19	30	1.98
37116700--37117159	89	5.2	88	76	8	421	26	23	19	30	1.98
37117587--37117667	24	3.4	24	88	6	119	29	23	12	34	1.91
37124599--37124644	23	2.1	23	84	8	60	43	15	4	36	1.66
37124599--37124657	22	2.7	22	82	7	66	40	16	5	37	1.71
37126177--37126215	18	2.2	18	85	0	51	53	2	17	25	1.56
37129903--37129980	33	2.4	32	81	10	86	32	17	24	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37134491--37134531	8	5.5	8	86	13	61	73	0	0	26	0.84
37136161--37136196	18	1.9	18	88	5	54	58	2	0	38	1.13
37136273--37136298	9	2.9	9	100	0	52	42	0	0	57	0.98
37137003--37137057	28	2.0	28	85	7	76	47	1	0	50	1.11
37137678--37137716	19	2.1	19	85	9	53	51	0	5	43	1.24
37148787--37148825	19	2.1	19	95	0	69	28	10	12	48	1.74
37148767--37148888	54	2.3	53	84	4	163	31	13	14	40	1.86
37148982--37149018	10	3.9	9	89	10	56	21	0	21	56	1.42
37148982--37149018	19	1.9	19	94	0	65	21	0	21	56	1.42
37148996--37149115	64	1.9	64	92	0	204	25	5	21	48	1.70
37151728--37151938	103	2.1	101	96	1	386	49	7	3	39	1.48
37151904--37151946	22	2.0	22	90	0	68	48	0	2	48	1.14
37153762--37153823	28	2.4	25	83	8	79	56	0	4	38	1.21
37153932--37154017	3	28.7	3	85	4	111	60	4	1	33	1.25
37155605--37156020	207	2.0	207	99	0	823	28	24	19	27	1.99
37156060--37156460	44	9.1	44	74	3	347	26	24	17	31	1.97
37156042--37156454	89	4.7	89	88	0	594	27	24	17	30	1.97
37157938--37158026	46	2.0	44	89	8	135	13	23	19	43	1.86
37162687--37162722	18	1.9	19	88	5	56	47	0	11	41	1.39
37171860--37172044	79	2.3	82	83	7	229	24	27	22	24	2.00
37171841--37172044	40	5.1	40	81	8	229	24	27	22	25	2.00
37184227--37184346	62	1.9	62	98	0	231	41	2	25	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37187543--37187583	17	2.4	17	80	15	57	73	2	0	24	0.96
37191562--37191759	53	3.7	53	85	2	227	24	17	15	42	1.87
37192508--37192587	26	3.1	26	83	5	101	32	26	23	17	1.97
37192718--37192769	27	2.0	26	85	11	70	26	21	19	32	1.97
37192767--37193150	27	14.3	27	80	6	363	18	19	19	42	1.90
37192769--37193150	54	7.1	54	83	5	445	18	19	18	42	1.89
37192767--37193150	81	4.8	81	81	5	411	18	19	19	42	1.90
37196007--37196064	28	2.1	28	93	0	98	43	20	3	32	1.69
37196516--37196710	54	3.6	55	73	11	143	29	25	30	14	1.95
37206473--37206511	20	1.9	21	89	5	62	48	5	0	46	1.24
37210451--37210490	20	2.0	20	100	0	80	20	10	25	45	1.81
37218716--37218764	25	2.0	25	92	4	82	38	18	8	34	1.80
37226114--37226339	40	5.7	40	92	2	330	26	27	22	24	2.00
37234104--37234195	39	2.3	39	88	5	132	25	28	22	23	2.00
37234085--37234248	40	4.1	40	80	10	176	24	27	23	25	2.00
37237148--37237310	81	2.0	81	97	0	308	48	3	19	29	1.64
37238917--37239935	238	4.3	238	99	0	2029	34	12	15	37	1.86
37240702--37240861	81	2.0	80	95	1	284	39	21	11	27	1.88
37241371--37241540	40	4.3	39	86	5	220	25	27	22	24	2.00
37241371--37241589	117	1.9	118	79	12	254	25	27	21	25	1.99
37249359--37249622	40	6.7	40	89	5	360	25	27	21	25	1.99
37256045--37256213	51	3.3	50	74	11	155	27	14	27	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37256085--37256219	51	2.7	50	84	3	173	26	17	27	28	1.97
37256216--37256310	45	2.1	45	92	0	154	28	17	23	30	1.97
37260326--37260607	44	6.5	43	71	11	182	29	21	19	29	1.98
37260193--37260622	217	2.0	217	87	2	632	28	22	19	29	1.98
37260922--37261581	88	7.5	88	86	0	719	21	23	26	28	1.99
37261036--37261356	44	7.3	44	63	6	157	22	24	28	25	1.99
37260922--37261581	176	3.8	176	85	0	836	21	23	26	28	1.99
37261004--37261581	264	2.2	264	88	0	852	21	23	27	28	1.99
37261390--37261528	44	3.2	44	68	8	120	25	23	23	26	2.00
37263762--37263822	26	2.3	26	83	5	70	55	4	16	22	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182