genome.fa.s21.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  171  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52217018--52217467	115	3.9	114	78	6	392	26	14	19	39	1.90
52218961--52218999	20	2.0	20	84	0	51	28	10	17	43	1.82
52219304--52219944	9	74.4	9	78	9	637	46	19	0	33	1.55
52219598--52219625	13	2.2	13	100	0	56	39	25	0	35	1.56
52219589--52219634	22	2.1	22	100	0	92	41	23	0	34	1.55
52219908--52219951	7	6.0	7	89	10	70	54	15	0	29	1.42
52219890--52219978	30	2.7	31	84	10	99	50	16	0	32	1.46
52225108--52225242	66	2.0	66	88	2	200	41	16	26	15	1.88
52225594--52225853	42	6.2	41	82	4	200	25	21	22	30	1.99
52225651--52225857	41	5.0	41	85	2	261	25	23	20	30	1.98
52226517--52226748	43	5.4	43	83	2	234	31	27	17	24	1.97
52226762--52226812	22	2.4	21	75	21	52	39	1	1	56	1.22
52234338--52234380	19	2.3	19	79	0	50	9	11	20	58	1.61
52234680--52234731	22	2.4	22	83	6	70	30	42	1	25	1.66
52234946--52234974	15	2.0	15	93	6	51	34	34	0	31	1.58
52235387--52235529	41	3.5	41	94	0	241	28	32	21	16	1.95
52235645--52235723	40	2.0	40	94	0	140	18	20	24	36	1.95
52238780--52238836	29	2.0	29	86	6	80	29	12	17	40	1.86
52251852--52251898	21	2.3	21	88	3	78	38	19	0	42	1.51
52266652--52266687	19	1.9	19	88	5	56	5	11	5	77	1.10
52267284--52267315	3	10.7	3	93	0	55	34	0	0	65	0.93
52267839--52267914	24	3.2	25	69	12	70	39	7	1	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52271691--52271732	3	14.3	3	80	5	50	35	2	0	61	1.09
52271686--52271732	23	2.0	23	100	0	94	34	4	0	61	1.15
52271689--52271740	23	2.3	23	90	6	79	32	5	0	61	1.20
52288082--52288118	3	12.3	3	100	0	74	64	0	0	35	0.94
52291986--52292030	16	2.6	17	82	6	56	33	20	8	37	1.83
52292829--52292869	21	1.9	22	85	14	59	24	4	9	60	1.47
52299573--52299613	21	1.9	22	85	5	57	73	2	14	9	1.19
52310147--52310240	9	10.4	9	92	0	152	44	23	8	23	1.80
52311114--52311140	14	1.9	14	100	0	54	74	0	0	25	0.83
52313055--52313152	44	2.3	42	84	5	124	26	14	24	34	1.94
52313094--52313174	42	1.9	43	84	2	110	24	17	25	32	1.97
52320106--52320146	21	2.0	21	85	4	57	65	0	2	31	1.05
52320765--52320835	9	7.7	9	71	16	56	35	2	2	59	1.27
52320767--52320834	27	2.5	26	80	15	75	35	2	2	58	1.28
52320765--52320839	28	2.7	27	74	12	71	37	2	2	57	1.27
52322876--52323030	25	6.3	25	76	7	129	31	19	30	18	1.95
52322876--52323033	73	2.1	74	84	4	203	32	18	30	18	1.95
52323570--52323598	10	2.7	11	94	5	51	37	20	0	41	1.53
52331266--52331303	20	1.9	20	88	0	58	31	5	2	60	1.33
52337389--52337430	18	2.3	18	91	0	66	52	11	7	28	1.64
52340130--52340189	25	2.3	26	88	5	86	33	0	1	65	1.03
52340130--52340189	27	2.3	26	91	5	95	33	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52341563--52341628	25	2.6	26	76	9	73	72	3	3	21	1.11
52344910--52344962	22	2.3	24	78	18	67	50	1	0	47	1.12
52353025--52353586	87	6.5	87	85	4	672	44	10	14	31	1.78
52352850--52353587	261	2.9	259	81	6	732	45	10	13	31	1.77
52353712--52353753	22	1.9	22	85	0	57	64	2	2	30	1.19
52354213--52354254	20	2.1	20	90	0	66	52	7	7	33	1.56
52361943--52361991	23	2.1	23	84	0	62	28	6	20	44	1.75
52367923--52367966	5	8.8	5	100	0	88	38	0	0	61	0.96
52370201--52370302	10	10.4	10	72	8	84	65	2	0	31	1.07
52370200--52370235	18	2.0	18	94	0	63	80	0	0	19	0.71
52370201--52370303	31	3.5	30	80	6	104	65	2	0	32	1.08
52370576--52370736	9	17.2	9	66	19	62	29	4	2	62	1.29
52370624--52370702	29	2.8	28	78	3	86	32	3	2	60	1.28
52370618--52370665	20	2.4	21	79	10	55	27	4	4	64	1.30
52370633--52370704	28	2.5	30	82	13	89	34	2	0	62	1.10
52370576--52370702	19	6.7	19	73	8	98	31	4	2	61	1.29
52376603--52376651	10	4.7	11	76	20	52	18	4	0	77	0.92
52376600--52376655	16	3.2	16	83	16	60	19	3	0	76	0.93
52376614--52376654	20	2.1	19	90	4	64	21	2	0	75	0.92
52376805--52376851	19	2.5	19	96	0	85	38	42	4	14	1.66
52377817--52378019	109	1.8	111	88	2	311	32	12	23	32	1.92
52381248--52381273	11	2.4	11	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52382513--52382539	2	13.5	2	100	0	54	51	0	0	48	1.00
52385488--52385526	20	2.0	20	94	0	69	46	0	7	46	1.31
52387238--52387263	7	3.7	7	100	0	52	61	23	0	15	1.33
52392164--52392209	23	2.0	23	83	8	58	36	21	23	17	1.94
52401362--52401664	164	1.8	164	98	0	588	40	15	14	29	1.87
52406288--52406382	7	13.7	7	67	14	54	16	1	37	44	1.55
52406358--52406438	14	5.8	14	70	9	58	18	2	25	53	1.57
52406356--52406438	28	2.9	29	74	15	84	19	2	26	51	1.59
52406651--52406744	7	13.6	7	74	12	52	19	0	28	52	1.46
52406655--52406693	20	2.0	20	84	0	51	17	0	35	46	1.49
52406823--52406860	20	1.9	20	88	0	58	21	0	21	57	1.40
52406831--52406890	28	2.2	27	81	3	66	21	1	21	55	1.53
52406906--52406931	7	3.7	7	100	0	52	26	0	15	57	1.38
52407582--52407646	28	2.3	28	82	10	71	21	1	23	53	1.54
52407638--52407674	19	1.9	19	89	10	58	13	5	35	45	1.66
52407825--52407877	21	2.5	22	76	14	58	15	7	28	49	1.71
52408167--52408196	14	2.1	14	93	0	51	43	20	3	33	1.68
52408203--52408247	14	3.3	14	81	3	56	20	6	33	40	1.78
52412543--52412595	26	2.0	26	85	7	72	37	13	13	35	1.83
52414013--52414093	31	2.5	32	84	4	92	38	4	7	49	1.53
52416966--52417019	9	5.7	9	77	18	56	18	5	1	74	1.11
52416959--52417001	19	2.2	20	91	4	70	20	2	6	69	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52416959--52417019	19	3.2	19	82	13	63	19	4	4	70	1.24
52421550--52421724	50	3.5	50	66	3	145	29	20	25	24	1.99
52421541--52421817	100	2.8	100	87	2	394	30	19	23	26	1.98
52421541--52421858	100	3.2	99	84	5	381	30	19	22	27	1.98
52424462--52424636	50	3.5	50	66	3	145	29	20	25	24	1.99
52424761--52425029	50	5.4	50	68	3	191	31	20	23	24	1.98
52424344--52424940	299	2.0	298	95	0	1068	31	18	24	25	1.98
52424453--52425030	100	5.8	100	71	13	490	32	19	23	24	1.98
52425011--52425049	20	2.0	20	89	0	60	35	23	28	12	1.91
52424960--52425099	70	2.0	70	91	0	226	31	22	26	19	1.98
52425070--52425340	50	5.4	50	74	0	254	30	20	23	24	1.98
52424863--52425199	170	2.0	170	90	0	530	31	21	23	23	1.98
52425030--52425340	100	3.1	101	91	0	491	31	21	23	23	1.98
52425570--52425719	44	3.4	42	69	17	117	31	22	20	26	1.98
52425571--52425771	88	2.3	87	87	1	296	30	20	22	25	1.98
52427406--52427442	18	2.1	18	90	10	58	29	16	0	54	1.43
52432435--52432472	15	2.4	16	82	8	51	42	0	5	52	1.24
52433341--52433395	27	2.0	28	86	6	78	40	3	1	54	1.28
52433890--52433958	34	2.0	34	100	0	138	36	11	14	37	1.83
52439521--52439577	30	1.9	30	85	0	78	38	8	22	29	1.85
52440177--52440249	38	1.9	37	86	8	103	45	1	21	31	1.61
52442579--52442608	15	1.9	16	93	6	53	66	0	10	23	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52449574--52449604	15	2.1	14	94	5	53	19	6	19	54	1.65
52456219--52456257	18	2.2	18	90	0	60	0	15	0	84	0.62
52461171--52461197	2	13.5	2	100	0	54	51	0	48	0	1.00
52461715--52462140	209	2.0	209	99	0	843	32	22	18	26	1.97
52462809--52463480	50	13.4	50	69	1	405	25	22	21	30	1.98
52462839--52463787	200	4.8	200	84	5	1304	24	23	21	30	1.98
52462839--52463512	100	6.7	100	90	2	1014	25	22	21	30	1.99
52463537--52463787	100	2.5	100	96	0	457	24	24	21	29	1.99
52463537--52463787	50	5.0	50	68	7	195	24	24	21	29	1.99
52463782--52465730	132	14.9	132	89	2	2785	28	23	19	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182