genome.fa.s21.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  129  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39625504--39625611	57	1.9	56	90	1	171	28	20	26	24	1.99
39639571--39639733	35	4.6	35	80	3	166	37	32	14	15	1.88
39640763--39640938	58	3.0	58	100	0	352	34	22	9	34	1.86
39653564--39653629	31	2.1	31	100	0	132	42	6	0	51	1.26
39662591--39662804	41	5.2	40	80	5	241	22	21	30	25	1.98
39662591--39662804	81	2.6	82	83	2	243	22	21	30	25	1.98
39663189--39663235	14	3.3	15	79	8	53	25	0	34	40	1.56
39663184--39663262	21	3.7	21	72	11	63	24	0	36	39	1.55
39663617--39663661	14	3.4	14	81	9	58	13	0	42	44	1.43
39663624--39663668	14	3.4	13	82	11	56	11	0	44	44	1.39
39664152--39664227	41	1.9	38	87	10	109	52	5	6	35	1.50
39666068--39666104	9	4.2	9	89	3	58	45	21	0	32	1.52
39666178--39666214	9	4.2	9	89	3	58	45	21	0	32	1.52
39666062--39666326	110	2.4	110	99	0	521	44	17	3	35	1.64
39666062--39666326	54	4.8	55	73	14	249	44	17	3	35	1.64
39670101--39670326	50	4.6	50	80	2	224	28	19	28	22	1.98
39670101--39670280	100	1.8	100	85	0	252	27	20	29	22	1.98
39677585--39677823	50	4.8	49	79	7	207	28	21	28	22	1.99
39682098--39682296	86	2.3	85	85	4	229	40	17	29	13	1.87
39682617--39682850	43	5.4	43	84	2	263	27	15	28	27	1.96
39692726--39692776	23	2.2	23	89	0	75	27	7	21	43	1.80
39693991--39694321	50	6.6	51	85	3	417	22	29	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39696544--39696721	27	6.6	27	77	6	137	30	28	15	25	1.96
39696544--39696721	54	3.3	54	78	7	164	30	28	15	25	1.96
39704557--39704734	27	6.6	27	77	6	137	30	28	15	25	1.96
39704557--39704734	54	3.3	54	78	7	164	30	28	15	25	1.96
39717481--39717511	16	1.9	16	93	0	53	54	0	3	41	1.16
39720639--39720887	127	2.0	127	84	0	327	36	24	10	29	1.88
39723268--39723314	23	2.0	23	100	0	94	44	17	12	25	1.84
39723495--39723548	25	2.2	25	89	0	81	25	14	12	46	1.81
39724233--39724282	25	2.0	25	100	0	100	20	28	16	36	1.93
39726657--39726744	26	3.4	26	75	17	69	26	4	1	68	1.16
39726708--39726754	23	2.1	21	84	11	58	19	2	2	76	0.99
39727135--39727348	93	2.3	92	75	13	226	39	20	7	32	1.81
39727397--39727451	18	3.1	18	76	12	60	61	0	0	38	0.96
39727377--39727452	37	2.1	37	82	9	93	60	0	2	36	1.11
39727832--39727877	13	3.6	13	80	13	51	47	2	2	47	1.26
39728480--39728531	24	2.2	24	89	0	77	50	9	3	36	1.54
39728793--39728831	18	2.2	18	95	0	69	30	28	15	25	1.96
39732696--39732747	24	2.2	24	89	0	77	50	9	3	36	1.54
39736848--39736889	12	3.6	12	77	6	50	40	21	14	23	1.90
39736824--39736889	23	2.9	23	84	4	89	40	19	12	27	1.87
39743024--39743110	8	10.6	8	80	16	90	20	1	2	75	0.97
39743054--39743115	7	8.4	7	80	19	65	19	0	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39743024--39743111	28	3.2	27	80	7	81	20	1	2	76	0.97
39743347--39743949	107	5.6	107	97	0	1118	31	15	18	35	1.91
39744894--39744928	16	2.2	16	100	0	70	17	17	22	42	1.88
39750038--39750091	11	4.6	11	77	11	54	83	0	16	0	0.65
39750043--39750097	17	3.2	17	86	0	74	81	1	16	0	0.77
39750041--39750097	28	2.0	28	86	6	80	82	1	15	0	0.75
39751043--39751096	24	2.2	24	86	0	81	31	11	27	29	1.91
39751365--39751486	44	2.7	45	80	6	140	26	25	23	24	2.00
39751487--39751929	132	3.4	132	90	0	699	31	16	24	27	1.97
39753738--39753809	8	9.6	8	75	22	68	25	1	1	72	1.01
39753739--39753814	17	4.7	15	78	12	64	23	1	1	73	0.98
39753759--39753813	3	19.3	3	75	17	55	27	0	0	72	0.85
39753744--39753814	14	5.0	14	76	11	65	23	1	1	73	1.00
39753738--39753814	22	3.9	19	73	17	68	24	1	1	72	1.00
39753741--39753817	20	3.9	20	71	25	58	24	1	1	72	1.00
39754049--39754780	107	6.9	107	96	0	1297	30	15	18	36	1.92
39755629--39755671	21	2.0	21	86	0	59	46	16	9	27	1.77
39760716--39760825	49	2.2	49	95	0	202	31	14	12	40	1.84
39767589--39767656	34	2.0	34	100	0	136	23	29	17	29	1.97
39773300--39773568	51	5.6	50	67	13	177	29	18	17	34	1.94
39773249--39773569	95	3.4	95	83	3	405	29	18	17	34	1.94
39785282--39785323	4	10.8	4	80	14	52	71	0	4	23	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39791100--39791184	44	1.9	44	95	0	152	12	15	37	34	1.86
39792554--39792599	2	23.0	2	95	0	83	50	2	47	0	1.13
39797937--39797970	6	5.7	6	96	0	59	20	17	26	35	1.95
39797931--39797970	18	2.2	18	86	0	53	22	17	22	37	1.94
39806504--39806566	31	2.0	33	84	6	85	41	14	11	33	1.81
39807685--39808160	259	1.8	259	98	0	916	26	13	19	40	1.88
39814193--39815101	28	32.5	28	98	0	1741	25	14	28	31	1.94
39822446--39822470	13	1.9	13	100	0	50	32	20	16	32	1.94
39823020--39823197	27	6.6	26	82	6	178	26	15	28	29	1.96
39823021--39823176	82	1.9	81	86	3	224	26	16	28	28	1.97
39823017--39823197	82	2.2	81	82	2	220	27	16	27	29	1.97
39823102--39823208	27	3.9	27	85	1	70	26	14	28	30	1.95
39825153--39825427	137	2.0	138	86	0	381	32	25	21	20	1.97
39829604--39829775	87	2.0	87	87	2	247	33	18	22	26	1.96
39836105--39836136	3	10.7	3	100	0	64	68	0	0	31	0.90
39838052--39838116	24	2.6	24	73	11	60	46	0	0	53	1.00
39838814--39838853	11	3.6	11	93	6	64	22	35	0	42	1.54
39838905--39838929	11	2.3	11	100	0	50	24	0	0	76	0.80
39840033--39840057	7	3.6	7	100	0	50	28	0	12	60	1.32
39840708--39840747	18	2.2	18	95	0	71	22	30	7	40	1.81
39841175--39841218	23	1.9	23	100	0	88	40	0	15	43	1.47
39841263--39841669	23	18.2	23	80	11	350	47	26	0	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39841259--39841659	45	9.0	44	78	12	399	47	27	0	25	1.53
39841259--39841661	66	6.0	66	85	8	478	47	27	0	25	1.53
39841664--39841907	116	2.1	116	93	1	418	38	9	7	44	1.65
39844915--39845263	123	2.8	123	95	0	608	33	21	15	29	1.94
39845836--39845883	23	2.1	23	100	0	96	58	4	12	25	1.52
39845839--39845891	23	2.3	23	93	3	88	58	5	13	22	1.56
39846142--39846192	25	2.0	25	100	0	102	60	3	3	31	1.33
39846223--39846270	25	1.9	25	87	8	71	58	2	0	39	1.10
39846637--39846681	14	3.2	14	81	6	56	35	0	0	64	0.94
39846639--39846699	20	3.0	20	83	4	70	37	0	0	62	0.96
39848368--39848411	23	1.9	23	86	9	63	18	2	22	56	1.52
39869896--39869927	16	2.0	16	100	0	64	50	12	6	31	1.65
39877561--39877723	45	3.6	44	80	4	182	34	27	15	22	1.95
39890653--39890701	22	2.2	22	92	0	80	46	10	2	40	1.49
39894096--39894132	19	1.9	19	88	0	56	16	5	5	72	1.21
39897740--39898131	51	7.7	50	78	6	378	29	27	14	29	1.95
39897740--39898131	102	3.9	102	93	0	624	29	27	14	29	1.95
39903170--39903202	16	2.0	17	88	5	50	39	12	3	45	1.57
39904704--39904924	41	5.4	41	91	1	329	31	23	19	24	1.98
39904704--39904924	81	2.7	81	90	1	327	31	23	19	24	1.98
39908040--39908071	15	2.1	15	94	0	55	15	6	9	68	1.36
39914906--39914960	18	2.9	19	67	20	51	43	1	9	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39919592--39919637	20	2.2	22	85	14	62	34	2	4	58	1.30
39921943--39922022	22	3.8	21	77	9	74	31	0	17	51	1.46
39921986--39922058	34	2.1	34	82	5	85	23	0	15	61	1.33
39922082--39922157	20	3.7	20	79	13	73	13	0	30	56	1.37
39927343--39927390	15	3.2	15	93	0	87	27	0	20	52	1.47
39933266--39933297	13	2.5	13	100	0	64	59	0	0	40	0.97
39933301--39933366	30	2.3	28	86	5	87	66	3	6	24	1.28
39933301--39933372	28	2.5	30	86	4	94	66	2	5	25	1.27
39933680--39933718	19	2.1	19	85	0	51	41	0	2	56	1.13
39933755--39933960	90	2.3	89	82	4	243	33	8	18	39	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182