genome.fa.s21.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Length:  55873576

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   

This is table  53  of  182  ( 21791 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16520387--16520558	75	2.4	74	78	3	170	34	19	27	18	1.95
16522359--16522403	23	1.9	24	86	4	65	6	4	11	77	1.09
16522410--16522435	13	2.0	13	100	0	52	38	0	7	53	1.30
16522403--16522477	22	3.3	22	78	10	80	40	0	2	57	1.13
16522403--16522491	45	2.0	46	82	6	110	40	0	3	56	1.16
16522413--16522486	22	3.3	22	77	7	69	39	0	4	56	1.18
16522549--16522606	21	2.7	21	76	12	64	41	1	3	53	1.28
16522561--16522612	23	2.4	21	87	6	68	44	1	1	51	1.23
16522561--16522614	22	2.5	21	82	11	65	42	1	1	53	1.22
16528742--16528785	11	4.1	10	83	13	52	11	9	2	77	1.08
16528991--16529141	36	4.7	35	76	18	166	78	3	9	8	1.08
16529078--16529141	18	3.7	17	78	17	69	79	3	10	6	1.02
16528999--16529159	62	2.7	58	87	8	223	77	3	10	8	1.10
16533098--16533131	17	1.9	18	88	5	52	23	11	0	64	1.26
16533129--16533178	10	4.8	10	78	7	55	42	0	2	56	1.11
16533129--16533176	21	2.3	22	78	10	55	41	0	2	56	1.11
16533127--16533191	31	2.1	31	88	5	96	36	0	1	61	1.05
16533140--16533183	21	2.2	20	91	4	70	36	0	0	63	0.95
16533140--16533185	20	2.3	21	88	7	69	39	0	0	60	0.97
16533284--16533316	14	2.3	15	89	5	50	27	0	6	66	1.15
16535482--16535531	26	2.0	25	92	4	82	48	34	2	16	1.57
16535463--16536183	29	24.1	29	83	9	848	43	24	0	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16535517--16535560	23	1.9	23	100	0	88	45	22	0	31	1.53
16535472--16536183	63	11.9	61	83	12	692	43	24	0	31	1.60
16536091--16536214	23	4.8	23	68	26	79	45	21	0	31	1.58
16536206--16536330	56	2.2	56	90	2	189	36	12	7	43	1.71
16539848--16539913	29	2.3	28	84	7	87	42	13	16	27	1.86
16559724--16559756	15	2.2	15	94	0	57	36	12	33	18	1.88
16561822--16561888	33	2.0	33	94	5	118	19	14	23	41	1.89
16572453--16572477	7	3.6	7	100	0	50	40	0	0	60	0.97
16577717--16577793	37	2.1	37	97	0	145	28	10	14	46	1.77
16584606--16584720	41	2.8	41	89	0	167	28	20	19	31	1.97
16585798--16586183	192	2.0	192	100	0	772	33	21	6	38	1.78
16593377--16593417	17	2.5	16	84	7	55	29	0	17	53	1.44
16594171--16594355	46	4.0	46	97	0	343	33	9	28	28	1.88
16597720--16597753	17	2.0	17	88	0	50	41	0	14	44	1.45
16608101--16608257	48	3.3	48	91	3	237	46	11	8	33	1.71
16619508--16619569	29	2.1	29	90	0	97	37	17	25	19	1.94
16624425--16624456	15	2.1	16	88	11	50	56	6	12	25	1.59
16624585--16624837	127	2.0	126	98	0	488	39	13	13	33	1.84
16625043--16625110	34	2.0	34	91	0	109	44	17	7	30	1.76
16631460--16631503	15	2.8	16	82	10	54	38	0	11	50	1.39
16632008--16632046	19	2.0	21	85	10	55	12	30	17	38	1.88
16643936--16644388	159	2.9	155	82	5	534	34	16	14	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16644464--16644667	83	2.5	82	91	3	320	25	6	15	51	1.68
16647011--16647040	6	5.0	6	100	0	60	50	16	0	33	1.46
16651286--16651342	30	1.9	30	82	7	71	50	0	3	45	1.18
16652632--16652699	29	2.3	30	82	5	75	38	2	10	48	1.52
16654522--16654563	18	2.3	19	80	12	52	21	0	7	71	1.09
16669124--16669154	16	1.9	16	93	0	53	25	16	0	58	1.38
16670692--16670759	28	2.4	28	85	2	91	30	13	20	35	1.91
16672165--16672253	27	3.3	27	98	0	169	40	17	12	29	1.86
16672249--16672307	24	2.4	25	81	16	70	49	16	3	30	1.63
16675173--16675232	29	2.1	29	100	0	120	33	20	6	40	1.78
16679009--16679040	15	2.1	15	100	0	64	68	6	0	25	1.12
16684872--16684939	25	2.7	25	84	6	75	48	5	19	26	1.71
16687196--16687220	7	3.6	7	100	0	50	44	0	12	44	1.41
16687245--16687334	7	12.9	7	80	4	83	48	0	22	28	1.50
16687208--16687342	35	3.9	34	71	12	103	43	1	25	28	1.63
16687280--16687341	21	3.0	21	78	0	70	48	0	20	30	1.50
16687769--16687801	17	1.9	17	88	11	50	63	6	3	27	1.32
16688367--16688416	3	16.7	3	100	0	100	68	0	0	32	0.90
16693349--16693378	12	2.5	12	94	0	51	56	13	6	23	1.60
16693409--16693438	12	2.5	12	94	0	51	56	13	6	23	1.60
16693327--16693497	60	2.9	59	96	1	315	56	11	11	20	1.65
16693468--16693509	12	3.5	12	93	0	66	54	14	9	21	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16693518--16693547	10	3.0	10	90	0	51	60	0	26	13	1.34
16694007--16694118	58	1.9	59	87	5	165	50	16	17	15	1.79
16694079--16694106	14	2.0	14	100	0	56	42	21	21	14	1.88
16694106--16694143	11	3.4	11	85	7	58	57	7	10	23	1.58
16694820--16694881	11	5.9	11	76	12	60	53	0	3	43	1.17
16694826--16694930	22	5.2	20	70	20	76	61	0	3	34	1.14
16694845--16694881	11	3.4	11	96	0	65	54	0	5	40	1.24
16694820--16694921	51	2.0	52	88	1	152	57	0	3	38	1.17
16694820--16694935	40	2.8	42	84	8	141	59	0	3	37	1.14
16703436--16703473	3	12.7	3	94	0	67	31	2	0	65	1.06
16715914--16716237	44	7.5	43	73	10	159	29	20	22	27	1.99
16716084--16716247	44	3.8	43	79	6	161	29	21	22	26	1.99
16715914--16716319	218	1.9	214	83	5	487	30	21	21	26	1.98
16717844--16717881	3	12.7	3	94	0	67	31	2	0	65	1.06
16717828--16717912	9	8.7	10	81	8	79	25	4	2	67	1.23
16725825--16725929	53	2.0	53	94	0	183	36	14	11	38	1.82
16731997--16732050	27	2.0	27	92	0	90	46	12	3	37	1.60
16732104--16732338	117	2.0	118	88	2	348	26	13	16	43	1.85
16749562--16749670	42	2.6	42	94	0	191	25	25	29	19	1.98
16752464--16752490	14	1.9	14	100	0	54	22	7	29	40	1.81
16763912--16764025	62	1.9	59	85	5	156	42	5	3	49	1.42
16764806--16764861	20	2.6	22	83	13	80	32	16	8	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16766931--16766998	16	4.2	16	96	0	118	27	0	36	35	1.58
16766979--16767073	45	2.1	44	88	1	136	34	5	27	32	1.79
16767211--16767265	25	2.2	25	84	9	69	52	1	0	45	1.11
16767396--16767556	47	3.6	46	69	18	140	48	3	3	45	1.34
16772004--16772079	29	2.6	29	81	4	82	31	2	3	61	1.28
16772028--16772071	23	1.9	23	85	0	61	34	2	2	61	1.21
16772430--16772465	15	2.3	16	90	4	56	22	0	11	66	1.22
16784635--16784920	84	3.3	84	74	10	299	27	19	24	28	1.99
16784503--16784838	45	7.7	44	73	13	230	28	20	24	26	1.99
16784417--16784877	218	2.1	218	87	0	645	29	19	22	27	1.98
16784636--16784964	174	1.9	173	89	1	507	28	19	23	28	1.98
16786584--16786641	21	2.8	21	89	2	91	31	1	5	62	1.27
16786600--16786674	29	2.6	29	81	8	73	28	2	5	64	1.29
16787028--16787063	15	2.3	16	90	4	56	22	0	11	66	1.22
16788698--16788752	26	2.1	26	93	0	92	58	5	5	30	1.44
16791629--16791687	22	2.7	22	82	7	66	40	16	5	37	1.71
16791642--16791775	19	6.8	19	84	3	151	38	14	8	39	1.76
16791665--16791768	38	2.7	38	96	0	190	37	12	8	41	1.74
16792072--16792830	132	5.8	132	97	0	1407	31	23	16	28	1.97
16799486--16799540	22	2.6	21	78	13	60	40	16	7	36	1.76
16799489--16799533	22	2.0	22	86	4	63	37	17	6	37	1.76
16799512--16799561	19	2.5	21	83	6	59	40	12	8	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16799489--16799561	19	3.5	19	79	11	56	41	13	6	38	1.72
16802691--16802737	17	2.9	16	82	14	53	76	2	4	17	1.04
16804892--16804931	21	2.0	20	85	5	53	55	12	2	30	1.50
16805658--16805690	12	2.8	12	95	0	57	36	9	9	45	1.68
16805676--16805938	86	3.1	86	88	1	339	43	17	8	30	1.79
16806138--16806305	86	2.0	86	84	0	219	41	16	10	32	1.82
16809075--16809225	73	2.1	70	92	4	248	31	8	9	50	1.65
16809586--16809623	15	2.5	16	83	12	53	36	34	0	28	1.58
16809611--16809644	14	2.4	14	90	9	52	29	44	2	23	1.68
16809621--16809662	15	2.9	15	85	3	50	33	45	2	19	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182