genome.fa.s5.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  100  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31717314--31717652	43	8.0	43	88	5	417	30	24	21	23	1.99
31717314--31717649	129	2.6	125	87	5	469	30	24	21	23	1.99
31717961--31718015	21	2.6	21	79	0	65	7	45	12	34	1.70
31717976--31718179	87	2.3	87	84	3	259	11	31	16	40	1.84
31718068--31718113	21	2.2	21	84	0	56	2	36	19	41	1.64
31719586--31719845	83	3.1	85	85	5	323	31	25	21	21	1.98
31719586--31719845	43	6.1	42	86	4	337	31	25	21	21	1.98
31725243--31725417	94	1.9	93	84	9	239	40	2	12	45	1.56
31725359--31725847	103	4.7	103	97	0	883	37	0	14	47	1.45
31725359--31726102	206	3.7	206	90	7	1254	37	0	14	47	1.47
31725442--31726040	190	3.1	190	93	4	993	37	0	14	47	1.48
31725751--31725934	87	2.1	87	93	2	316	38	1	13	47	1.49
31725838--31726086	103	2.4	103	94	1	437	37	1	14	47	1.52
31726579--31726672	47	2.0	47	89	0	143	32	22	14	29	1.94
31728857--31728911	14	4.0	14	75	11	51	41	32	1	23	1.65
31730401--31730449	22	2.3	22	85	3	64	63	4	4	28	1.31
31730650--31730711	19	2.9	21	79	20	67	64	1	4	29	1.23
31733111--31733150	16	2.6	15	84	4	53	77	0	12	10	0.99
31735058--31735090	4	8.2	4	100	0	66	51	24	0	24	1.48
31735606--31735658	16	3.3	16	74	10	54	33	24	5	35	1.79
31735848--31735983	41	3.5	40	74	7	125	33	25	15	25	1.95
31736130--31736176	24	2.0	24	84	16	62	51	17	0	31	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31736854--31736893	4	10.2	4	84	15	57	0	27	0	72	0.85
31742483--31742636	20	7.7	20	72	5	96	54	9	18	17	1.69
31742534--31742649	60	1.9	61	82	5	146	56	6	18	18	1.62
31742564--31742649	20	4.3	20	67	20	54	56	4	17	20	1.58
31744263--31744479	105	2.1	101	79	5	238	34	15	23	26	1.94
31749163--31749194	8	3.9	8	95	4	55	46	0	0	53	1.00
31749237--31749278	13	3.2	13	84	15	59	76	0	16	7	1.00
31751819--31751866	20	2.5	19	78	18	55	37	12	2	47	1.53
31752379--31752454	20	3.8	18	78	16	71	55	6	11	26	1.60
31752638--31752694	21	2.7	21	81	10	71	38	1	0	59	1.08
31752639--31752694	22	2.6	23	76	23	68	39	1	0	58	1.08
31754593--31754698	42	2.5	42	80	8	126	15	19	16	48	1.82
31760953--31761000	18	2.7	18	83	9	62	68	0	31	0	0.90
31767687--31767746	24	2.5	24	89	5	86	13	43	0	43	1.43
31771605--31771791	51	3.7	51	81	5	202	24	17	27	31	1.97
31771609--31771793	101	1.8	102	86	5	268	24	17	27	31	1.97
31771760--31771784	12	2.1	12	100	0	50	24	16	28	32	1.96
31781117--31781151	18	1.9	18	88	0	52	77	5	2	14	1.07
31781512--31781726	45	4.8	45	82	2	184	39	17	20	22	1.92
31781649--31781773	44	2.8	44	84	4	153	42	16	19	22	1.89
31782076--31782137	13	4.7	13	76	11	54	56	1	8	33	1.38
31782180--31782214	13	2.7	13	100	0	70	40	11	22	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31782223--31782359	73	1.9	73	87	0	202	34	6	18	40	1.77
31784800--31784846	3	15.7	3	100	0	94	68	0	0	31	0.90
31785745--31785824	23	3.5	23	73	11	65	30	12	30	27	1.93
31788532--31788574	23	1.9	23	85	4	61	58	0	6	34	1.25
31789431--31789490	27	2.2	28	88	5	88	40	21	23	15	1.91
31789675--31789758	26	3.2	26	81	6	116	27	15	17	39	1.90
31796512--31796556	18	2.6	18	89	3	65	20	15	0	64	1.29
31803385--31803735	45	7.8	45	93	0	567	28	15	25	30	1.96
31803831--31803998	51	3.3	51	85	0	228	27	16	23	32	1.96
31803831--31804022	51	3.8	51	83	2	215	28	16	23	31	1.96
31803831--31804036	102	2.0	103	83	0	261	29	15	25	30	1.96
31805445--31805517	18	4.9	14	73	25	62	26	8	0	65	1.20
31806746--31806817	32	2.2	32	82	0	90	50	2	25	22	1.63
31806827--31806915	39	2.3	39	88	1	135	37	15	15	31	1.90
31811233--31811304	32	2.2	32	85	0	99	45	2	26	25	1.67
31811314--31811597	39	7.3	39	98	0	543	38	15	13	32	1.86
31811789--31811826	20	2.0	20	90	10	62	21	26	10	42	1.85
31813398--31813518	64	1.9	64	87	3	181	33	25	12	28	1.92
31814716--31814882	43	3.9	44	82	7	198	29	30	16	23	1.96
31814708--31814924	86	2.5	87	82	2	249	29	29	16	24	1.97
31814716--31814924	43	4.9	42	78	4	175	29	29	16	24	1.96
31815227--31815328	21	4.9	21	79	4	98	8	41	14	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31820820--31821021	9	24.2	9	69	15	96	37	2	15	44	1.62
31820825--31820944	16	7.9	16	66	19	78	35	2	16	45	1.61
31820839--31820975	25	5.6	25	74	6	118	37	2	15	44	1.61
31820928--31821026	34	2.9	34	87	0	126	39	2	13	45	1.54
31821091--31821131	13	2.8	15	85	14	59	34	0	19	46	1.50
31821090--31821168	16	5.0	16	76	13	74	34	1	16	48	1.55
31822937--31822971	17	2.1	17	88	0	52	2	28	17	51	1.59
31824880--31824947	15	4.9	14	71	16	52	41	36	0	22	1.54
31824883--31824920	15	2.5	15	86	0	58	36	44	0	18	1.50
31825437--31825755	41	7.8	41	74	9	217	36	22	23	16	1.94
31825474--31825755	82	3.4	82	79	5	304	37	22	23	16	1.94
31826545--31826603	18	3.2	17	77	20	57	40	0	6	52	1.28
31828774--31828827	15	3.5	15	77	20	58	25	7	3	62	1.38
31830424--31830458	18	1.9	18	94	0	61	57	0	0	42	0.99
31830420--31830462	12	3.5	13	84	9	54	53	0	0	46	1.00
31831585--31831670	43	2.0	43	97	0	163	34	15	20	29	1.93
31831720--31831793	38	1.9	38	94	0	130	37	21	12	28	1.89
31837537--31837634	43	2.3	43	89	0	151	39	17	16	26	1.90
31841062--31841120	31	1.9	30	82	3	73	61	8	11	18	1.55
31842305--31842346	6	7.0	6	94	0	66	71	0	0	28	0.86
31846221--31846250	11	2.7	11	100	0	60	46	0	6	46	1.29
31849262--31849469	91	2.3	91	92	0	335	46	2	4	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31849384--31849444	28	2.2	28	85	5	81	45	0	3	50	1.17
31849302--31849444	44	3.2	43	69	20	121	46	2	3	48	1.31
31849496--31849804	66	5.2	57	67	20	202	42	2	4	49	1.39
31849485--31849902	120	3.5	120	96	1	748	42	2	5	49	1.38
31849606--31849640	18	2.0	17	88	5	52	45	0	0	54	0.99
31849730--31849781	15	3.6	15	80	12	56	44	0	1	53	1.11
31849859--31849900	15	2.7	16	82	14	52	45	0	2	52	1.13
31849850--31849891	15	2.9	15	82	10	52	47	0	0	52	1.00
31850114--31850151	16	2.4	16	90	0	67	26	34	2	36	1.71
31852797--31852834	3	12.7	3	94	0	67	2	34	0	63	1.09
31854102--31854144	22	2.0	21	82	13	52	65	9	2	23	1.34
31856962--31857062	45	2.2	45	87	0	139	38	15	18	26	1.91
31856978--31857078	45	2.2	45	89	0	148	39	11	18	29	1.87
31862546--31862600	25	2.2	25	77	6	58	23	3	7	65	1.34
31862620--31863286	333	2.0	333	99	0	1325	31	18	16	34	1.92
31868440--31868484	22	2.0	23	82	4	56	40	4	13	42	1.64
31868933--31868992	30	2.0	31	83	3	77	43	6	15	35	1.72
31875208--31875237	5	6.0	5	100	0	60	40	0	0	60	0.97
31878149--31878185	3	12.3	3	100	0	74	67	0	0	32	0.91
31878317--31878357	17	2.4	17	83	0	55	70	7	4	17	1.28
31881547--31881669	63	2.0	63	96	0	228	31	1	13	52	1.50
31885786--31885940	78	2.0	78	97	0	292	41	17	13	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31887797--31887824	10	2.8	10	100	0	56	60	17	0	21	1.36
31892439--31892569	67	2.0	67	83	1	165	36	20	16	25	1.94
31898201--31898229	14	2.0	15	93	6	51	48	6	24	20	1.74
31900820--31900863	15	2.9	14	78	18	52	77	2	9	11	1.08
31909936--31909999	29	2.2	29	88	0	92	51	14	12	21	1.75
31912654--31912695	15	2.9	15	82	10	52	52	0	0	47	1.00
31912760--31912806	16	3.0	16	78	12	53	51	2	0	46	1.13
31912645--31913060	120	3.5	120	96	0	744	49	5	2	42	1.39
31914987--31915189	41	5.0	41	87	4	212	19	18	28	33	1.95
31919819--31920427	304	2.0	304	98	0	1164	33	14	23	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185