genome.fa.s5.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  4  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
989377--989564	61	3.1	61	69	14	199	42	1	7	48	1.39
989438--989472	18	2.0	17	88	5	52	45	0	0	54	0.99
989825--989873	16	3.1	16	93	0	89	20	38	6	34	1.77
990865--990931	21	3.3	21	65	23	61	61	7	13	17	1.55
990866--990945	40	2.0	40	100	0	160	57	7	12	22	1.60
990922--990998	33	2.5	31	79	10	84	38	10	11	38	1.76
993811--994054	120	2.1	118	83	7	298	31	20	7	40	1.80
997810--997855	24	1.9	24	86	0	65	45	0	34	19	1.51
998423--998465	16	2.6	17	78	10	54	53	0	2	44	1.13
998536--998611	11	6.8	11	68	24	52	53	1	1	43	1.17
998504--998553	20	2.7	19	80	20	61	54	2	2	42	1.23
998945--998982	3	13.0	3	94	5	69	31	0	0	68	0.90
1002148--1002187	19	2.1	19	90	0	62	37	5	5	52	1.45
1005270--1005365	27	3.6	27	85	1	140	33	16	22	27	1.96
1005432--1005493	24	2.6	24	84	0	70	29	8	20	41	1.81
1005440--1005564	24	5.2	24	80	7	119	22	6	24	47	1.74
1005488--1005557	11	6.0	11	69	12	50	18	4	25	51	1.64
1005456--1005564	48	2.3	48	87	6	150	22	6	23	46	1.75
1005681--1005730	26	1.9	26	91	0	82	14	22	28	36	1.92
1005834--1005898	22	3.0	21	71	8	58	20	20	16	43	1.89
1009955--1010026	20	3.7	19	77	7	65	56	6	1	34	1.35
1009995--1010032	20	2.0	20	89	5	60	52	5	0	42	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010022--1010061	17	2.3	18	82	8	55	45	0	0	55	0.99
1010088--1010112	9	2.8	9	100	0	50	56	0	0	44	0.99
1010085--1010123	17	2.2	18	86	4	53	56	0	2	41	1.13
1010182--1010212	3	10.3	3	92	0	53	29	0	3	67	1.06
1012414--1012453	16	2.6	16	85	14	57	75	5	0	20	0.99
1013382--1013429	21	2.2	21	79	13	53	66	4	29	0	1.10
1020832--1020892	11	5.9	11	71	21	51	60	21	1	16	1.44
1020838--1020907	22	3.4	22	78	15	94	57	24	1	17	1.48
1020832--1020907	40	1.9	40	94	0	134	56	23	2	17	1.53
1023328--1023365	20	2.0	20	94	5	69	36	10	13	39	1.79
1033199--1033231	7	4.7	7	100	0	66	69	0	0	30	0.88
1036386--1036465	28	2.8	27	77	11	79	68	3	0	27	1.06
1036387--1036476	13	7.3	12	71	19	53	66	3	0	30	1.07
1036406--1036450	19	2.4	19	85	3	56	66	4	0	28	1.11
1036436--1036466	16	2.0	15	93	6	53	77	0	0	22	0.77
1036417--1036466	22	2.3	22	86	6	66	72	2	0	26	0.96
1038494--1038568	36	2.1	36	89	0	114	30	17	20	32	1.95
1038446--1038619	87	2.0	87	82	0	213	29	20	17	32	1.96
1038671--1038784	51	2.2	51	80	0	129	28	20	15	35	1.93
1038747--1038820	36	2.1	36	84	0	94	31	20	20	28	1.97
1038782--1039035	51	5.0	51	84	0	337	26	25	18	29	1.98
1038782--1039035	102	2.5	102	96	0	454	26	25	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038962--1039098	72	1.9	72	84	0	184	24	26	15	33	1.95
1039034--1039149	51	2.3	51	84	0	142	25	25	17	32	1.96
1038915--1039333	123	3.4	123	93	0	678	26	26	16	31	1.96
1039085--1039221	72	1.9	72	84	0	184	24	26	15	33	1.95
1039157--1039272	51	2.3	51	84	0	142	25	25	16	31	1.96
1054215--1054276	33	2.0	30	84	9	79	30	9	4	54	1.54
1054698--1055874	111	10.6	111	98	0	2221	30	14	20	34	1.92
1055876--1055949	36	2.1	36	89	0	112	29	21	21	27	1.99
1059414--1059463	9	5.7	9	97	2	93	78	10	0	12	0.98
1060639--1060752	43	2.6	44	81	6	126	30	14	28	25	1.95
1061885--1063487	50	32.2	50	69	7	700	32	25	19	21	1.97
1061875--1063475	100	16.1	100	83	2	1727	32	25	19	21	1.97
1061875--1063475	398	4.0	398	85	1	1918	32	25	19	21	1.97
1063495--1063659	85	1.9	85	80	9	194	30	21	19	28	1.98
1063471--1063825	129	2.8	129	83	0	451	31	19	20	28	1.97
1065550--1065611	33	2.0	30	84	9	79	30	9	4	54	1.54
1065759--1065803	25	1.9	23	82	13	56	35	13	2	48	1.54
1066049--1066503	112	4.1	111	95	1	770	32	14	18	34	1.91
1067604--1067642	19	2.1	19	85	0	51	33	2	0	64	1.08
1070260--1070304	21	2.0	21	87	8	63	64	2	0	33	1.06
1072036--1072066	16	1.9	16	93	0	53	16	3	22	58	1.52
1075181--1075351	93	1.8	93	96	0	315	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1075173--1075348	46	3.8	46	80	12	225	28	28	21	21	1.98
1077739--1077827	30	3.0	30	80	8	101	57	15	16	10	1.65
1077739--1077818	15	5.4	15	80	7	92	58	13	17	10	1.62
1077750--1077827	15	5.2	15	78	9	79	56	15	16	11	1.67
1081016--1081222	47	4.3	47	80	6	184	29	28	16	25	1.97
1086810--1086917	54	2.1	51	81	11	121	62	0	2	33	1.15
1087426--1087485	30	2.0	30	93	0	102	20	10	13	56	1.65
1097073--1097114	22	2.0	21	90	4	66	35	0	0	64	0.94
1097073--1097120	10	4.6	10	85	10	60	33	0	0	66	0.92
1111107--1111198	23	3.9	23	73	15	71	20	27	21	30	1.98
1111117--1111198	23	3.4	23	83	8	85	20	28	21	29	1.98
1119191--1119309	29	4.1	29	98	0	229	45	10	10	33	1.73
1119559--1119673	23	4.9	23	82	11	92	21	26	20	30	1.98
1120975--1121008	12	2.8	12	90	0	50	73	2	17	5	1.16
1126358--1126387	13	2.3	13	100	0	60	13	0	23	63	1.29
1126809--1126848	19	2.1	19	86	9	55	32	7	0	60	1.25
1128197--1128238	18	2.3	18	87	4	57	45	4	0	50	1.23
1132220--1132491	125	2.2	125	88	4	415	29	16	22	31	1.95
1135521--1136329	29	28.5	29	80	12	774	29	0	24	45	1.56
1135856--1136306	28	16.9	23	76	21	263	29	0	23	46	1.53
1135934--1135976	23	2.0	21	95	4	68	27	0	23	48	1.51
1136204--1136319	23	4.9	21	82	11	79	32	0	21	45	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1136615--1136670	24	2.3	24	93	0	94	21	17	33	26	1.96
1137125--1137267	75	1.9	74	98	0	268	24	25	23	25	1.99
1138704--1138759	29	1.9	29	89	7	87	57	1	0	41	1.09
1138816--1138873	11	5.3	11	69	22	50	39	0	27	32	1.57
1138794--1138874	22	3.7	22	86	0	117	38	0	28	33	1.57
1142126--1142151	13	2.0	13	100	0	52	15	30	15	38	1.88
1143545--1143572	9	3.1	9	100	0	56	21	0	10	67	1.20
1143994--1144036	12	3.4	12	78	12	50	41	11	2	44	1.53
1143994--1144028	14	2.5	14	85	0	52	42	8	2	45	1.49
1146381--1146426	23	2.0	23	82	0	56	41	10	2	45	1.51
1146394--1146454	31	2.0	31	83	6	79	39	13	3	44	1.60
1146523--1146553	14	2.1	15	94	5	55	16	6	3	74	1.16
1153171--1153205	16	2.2	16	100	0	70	37	0	0	62	0.95
1158439--1158481	18	2.2	20	88	8	63	25	2	6	65	1.30
1159762--1160619	300	2.9	297	78	7	885	37	13	8	40	1.76
1159458--1161318	840	2.2	834	79	7	1977	36	13	10	39	1.79
1161939--1162492	305	1.8	307	82	5	717	32	14	9	43	1.77
1165824--1165859	18	1.9	18	88	5	54	47	5	25	22	1.73
1171240--1171286	21	2.2	21	85	11	60	27	0	4	68	1.08
1171239--1171300	22	2.8	23	81	16	69	27	0	3	69	1.04
1172004--1172074	26	2.5	27	72	19	65	66	1	4	28	1.19
1172135--1172168	15	2.4	14	95	5	59	17	0	0	82	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1172197--1172306	58	1.9	58	84	3	150	22	11	13	51	1.73
1172721--1172778	19	3.1	18	79	16	73	63	3	1	31	1.21
1172722--1172793	19	3.6	19	78	14	67	63	2	1	31	1.17
1172758--1172821	30	2.1	30	82	5	76	62	1	1	34	1.14
1174357--1174422	29	2.3	30	94	5	118	56	13	7	22	1.63
1176565--1176613	25	2.0	25	92	4	82	51	4	2	42	1.32
1182911--1182962	3	17.3	3	76	7	52	36	3	1	57	1.28
1182911--1182962	24	2.2	24	86	6	70	36	3	1	57	1.28
1185311--1185357	18	2.6	18	83	10	51	12	8	8	70	1.34
1185407--1185434	3	9.3	3	100	0	56	32	0	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185