genome.fa.s5.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  170  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51032531--51032580	20	2.5	20	83	3	66	56	2	0	42	1.11
51033587--51033616	12	2.5	12	94	0	51	76	3	0	20	0.92
51043553--51043681	67	1.9	67	100	0	258	64	6	8	20	1.43
51043844--51043894	26	1.9	27	92	4	86	58	9	5	25	1.52
51043844--51043908	27	2.5	26	82	12	71	56	7	7	27	1.55
51047895--51048028	26	5.2	26	92	0	223	32	5	24	37	1.80
51048832--51048861	8	3.8	8	90	0	51	43	26	26	3	1.70
51049255--51049333	27	2.9	27	80	14	108	21	25	18	34	1.96
51051748--51051904	39	4.1	39	92	0	262	21	23	29	25	1.99
51052055--51052177	61	2.0	61	98	0	237	38	7	22	31	1.82
51056316--51056422	29	3.8	28	77	3	124	17	14	35	31	1.91
51059876--51059911	3	12.0	3	100	0	72	66	0	0	33	0.92
51060560--51060590	16	1.9	16	100	0	62	6	0	51	41	1.27
51062386--51062466	39	2.1	39	95	0	144	19	23	30	25	1.98
51065298--51065339	20	2.1	20	100	0	84	30	14	14	40	1.85
51065943--51066012	34	2.0	35	88	2	106	38	17	10	34	1.83
51066983--51067009	14	1.9	14	100	0	54	18	7	0	74	1.05
51071909--51071967	31	1.9	30	82	6	73	35	0	3	61	1.13
51075763--51075870	55	2.0	54	83	1	135	50	12	7	29	1.66
51078521--51078545	6	4.2	6	100	0	50	16	36	0	48	1.46
51079783--51079822	21	1.9	21	85	10	55	40	5	10	45	1.60
51081202--51081251	26	1.9	26	91	0	82	22	2	28	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51086166--51086518	3	116.0	3	66	18	81	27	8	3	60	1.41
51086474--51086518	22	2.1	21	91	4	72	31	6	0	62	1.21
51086681--51087061	127	3.0	127	91	2	563	33	12	15	38	1.85
51087986--51088029	17	2.5	17	85	7	52	34	4	2	59	1.30
51090067--51090113	18	2.5	20	79	13	62	51	4	0	44	1.21
51096419--51096552	69	1.9	70	86	4	191	44	9	11	34	1.73
51097286--51097335	22	2.2	22	92	3	82	36	22	18	24	1.95
51100449--51101192	156	4.8	156	89	2	987	38	12	9	39	1.75
51100437--51101239	77	10.2	79	84	3	874	37	12	9	39	1.76
51101369--51101417	18	2.6	18	81	12	55	34	2	0	63	1.06
51103044--51103081	20	1.9	20	89	10	60	60	7	0	31	1.25
51106472--51106526	27	2.0	28	85	3	76	61	1	0	36	1.06
51106479--51106531	23	2.2	25	86	13	83	62	0	0	37	0.96
51106488--51106531	23	1.9	23	100	0	88	59	0	0	40	0.98
51108817--51108856	15	2.7	15	96	0	71	20	15	20	45	1.86
51115522--51115588	34	1.9	35	87	3	100	44	11	8	34	1.73
51117018--51117121	18	5.5	19	75	13	81	26	0	9	62	1.32
51117018--51117099	9	8.9	9	78	5	74	26	1	8	63	1.31
51117210--51117253	18	2.4	18	80	0	61	40	0	2	56	1.11
51117414--51117440	14	1.9	14	100	0	54	51	7	7	33	1.58
51117480--51117504	10	2.5	10	100	0	50	92	0	8	0	0.40
51118501--51118533	15	2.1	17	88	11	52	48	6	0	45	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51124894--51124926	13	2.5	13	100	0	66	63	6	24	6	1.40
51127029--51127069	21	2.0	21	90	0	64	19	29	21	29	1.98
51131227--51131339	59	1.9	58	94	1	199	54	1	3	39	1.28
51135846--51136305	40	11.6	40	88	1	685	29	24	21	24	1.99
51135846--51136305	80	5.8	80	96	1	820	29	24	21	24	1.99
51137706--51137733	13	2.2	13	100	0	56	57	14	0	28	1.38
51140870--51140919	24	2.0	26	88	7	77	54	0	10	36	1.34
51141026--51141124	25	4.1	24	71	16	80	57	2	9	31	1.41
51141074--51141154	26	3.1	26	78	16	87	60	2	8	28	1.39
51141082--51141122	11	3.2	13	76	16	50	63	0	9	26	1.25
51141707--51141758	25	2.0	25	85	3	68	63	5	3	26	1.34
51143850--51143895	24	1.9	24	100	0	92	71	2	4	21	1.14
51147422--51147466	23	2.0	23	100	0	90	33	4	17	44	1.69
51149256--51149299	22	2.0	21	82	8	52	50	2	2	45	1.27
51151801--51151867	6	11.2	6	96	0	125	34	0	14	50	1.44
51152794--51152834	10	4.3	10	81	12	50	31	24	0	43	1.54
51154275--51154305	4	7.5	4	92	7	53	0	29	0	70	0.87
51154879--51154909	6	5.2	6	100	0	62	35	0	16	48	1.46
51161078--51161146	18	3.8	18	77	5	68	34	14	15	34	1.89
51162401--51162434	17	2.1	15	89	10	50	0	35	0	64	0.94
51162406--51162454	25	2.0	25	84	8	64	0	30	2	67	1.02
51167095--51167148	23	2.3	23	83	3	63	40	14	9	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51172886--51172944	25	2.4	25	97	0	109	44	22	16	16	1.87
51175896--51175935	15	2.5	17	84	8	57	60	0	5	35	1.19
51175952--51175999	24	2.0	23	84	4	60	29	20	2	47	1.61
51185060--51185091	17	1.9	16	93	6	55	53	0	15	31	1.43
51187742--51187807	21	3.2	21	73	14	66	39	0	3	57	1.14
51188037--51188070	13	2.8	12	86	4	50	47	0	0	52	1.00
51188452--51188486	7	5.1	7	96	3	63	42	0	0	57	0.99
51189106--51189152	20	2.5	19	86	6	60	40	2	17	40	1.61
51189993--51190055	19	3.3	19	70	26	51	36	25	28	9	1.87
51189964--51190062	39	2.6	37	81	9	119	36	25	26	12	1.91
51190461--51190501	21	1.9	22	85	5	57	41	14	0	43	1.45
51192843--51192887	21	2.1	21	83	0	54	22	26	26	24	2.00
51194989--51195171	86	2.1	86	82	3	215	42	8	12	37	1.73
51195559--51195606	24	2.0	24	100	0	96	33	20	16	29	1.95
51197285--51197366	20	4.0	20	73	22	71	25	7	2	64	1.32
51214306--51214340	18	1.9	18	88	0	52	31	0	11	57	1.34
51214637--51214685	25	2.0	25	84	4	64	63	8	0	28	1.23
51214649--51214713	25	2.9	23	80	15	66	66	7	0	26	1.19
51214675--51214713	19	2.0	20	90	5	62	71	7	0	20	1.10
51214971--51215003	16	2.0	17	88	5	50	42	6	0	51	1.26
51215282--51215327	25	1.9	24	86	8	67	30	6	10	52	1.62
51215762--51216153	132	3.0	130	86	1	570	32	18	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51215763--51216269	130	3.9	130	83	3	581	30	19	17	32	1.95
51215773--51216551	132	5.9	128	76	8	543	29	18	18	33	1.95
51237318--51238483	583	2.0	583	98	0	2244	23	19	21	35	1.96
51243989--51244019	11	2.8	11	100	0	62	74	0	25	0	0.82
51246560--51246594	18	1.9	18	88	0	52	31	0	11	57	1.34
51247187--51247232	25	1.9	24	86	8	67	30	6	10	52	1.62
51247666--51248172	130	3.9	131	82	4	551	30	19	17	32	1.95
51248100--51248337	132	1.8	132	80	7	295	25	18	19	36	1.94
51250549--51250580	6	5.3	6	92	0	55	43	15	21	18	1.87
51254826--51254882	21	2.7	21	78	10	71	47	22	15	14	1.82
51259519--51259564	23	2.0	23	100	0	92	30	13	13	43	1.81
51261493--51261553	30	2.0	30	81	6	70	34	13	18	34	1.89
51261888--51262050	58	2.9	57	78	10	142	41	1	3	53	1.27
51261920--51262048	54	2.3	57	80	7	140	43	1	3	51	1.26
51262226--51262256	16	1.9	16	93	0	53	29	29	6	35	1.82
51262576--51262636	23	2.6	25	80	17	76	36	11	4	47	1.61
51262876--51262949	3	25.3	3	80	10	82	62	4	0	33	1.14
51265194--51265223	14	2.1	14	93	0	51	46	36	0	16	1.47
51276466--51276508	18	2.4	17	81	11	50	27	2	18	51	1.59
51279516--51279593	33	2.4	32	79	16	88	51	6	1	41	1.36
51283638--51283739	49	2.1	49	100	0	204	42	19	7	30	1.80
51284880--51284972	45	2.1	44	95	2	168	34	2	2	61	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51285038--51285081	24	1.9	22	86	9	61	65	2	0	31	1.05
51285028--51285100	13	5.1	14	69	19	53	64	1	1	32	1.11
51285782--51285823	20	2.1	20	86	0	57	50	0	4	45	1.23
51286065--51286104	16	2.5	16	79	0	53	47	7	15	30	1.72
51304969--51305137	86	2.0	85	85	3	232	38	20	7	33	1.81
51305497--51305702	88	2.3	88	84	4	265	35	5	18	39	1.75
51306189--51306218	13	2.4	13	94	5	53	73	3	6	16	1.18
51310279--51310310	13	2.5	13	100	0	64	78	0	6	15	0.95
51310957--51311122	83	2.0	82	95	3	298	35	10	19	33	1.87
51310973--51311143	83	2.1	83	83	2	209	37	11	18	31	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185