genome.fa.s5.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  163  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48851229--48851277	3	15.7	3	79	8	53	61	2	6	30	1.32
48851244--48851287	19	2.2	20	88	4	63	61	4	6	27	1.41
48852166--48852222	22	2.6	22	82	0	69	15	21	50	12	1.76
48855372--48855406	15	2.3	15	85	0	52	77	8	8	5	1.13
48860472--48860552	42	1.9	42	84	0	108	19	22	16	41	1.89
48862222--48862279	27	2.2	26	84	12	73	55	5	1	37	1.33
48875737--48875851	47	2.4	47	80	5	117	40	15	16	27	1.89
48886129--48886164	15	2.4	16	90	9	58	30	5	0	63	1.17
48890527--48890666	43	3.3	43	82	7	135	17	19	33	29	1.95
48890655--48890842	86	2.2	85	83	3	225	27	31	17	23	1.97
48890655--48890862	43	4.8	43	77	3	168	29	31	16	22	1.96
48890716--48890887	86	2.0	86	81	0	200	29	30	15	24	1.96
48891213--48891308	21	4.6	21	86	0	111	6	41	14	37	1.71
48891281--48891325	21	2.1	21	87	0	63	4	42	15	37	1.67
48891296--48891442	66	2.2	66	85	4	190	12	28	17	40	1.87
48891337--48891465	66	2.0	66	85	3	179	14	24	17	42	1.87
48893599--48893638	13	2.7	15	88	11	57	35	0	20	45	1.51
48893599--48893675	16	4.9	16	78	10	70	35	1	16	46	1.56
48895126--48895159	15	2.3	15	94	0	59	64	11	17	5	1.45
48895382--48895418	11	3.4	11	96	0	65	54	2	5	37	1.38
48896603--48896654	27	1.9	27	88	0	77	50	9	0	40	1.35
48896722--48896758	10	3.7	10	92	0	65	43	13	0	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48898606--48898673	15	4.9	14	77	12	61	42	32	0	25	1.55
48899215--48899639	41	10.3	43	76	8	413	39	22	23	15	1.91
48899215--48899640	82	5.2	82	95	1	685	39	22	23	15	1.91
48900010--48900046	19	2.0	19	94	5	67	27	5	16	51	1.66
48905105--48905137	15	2.1	16	88	5	50	63	0	6	30	1.18
48914864--48915352	113	4.3	114	83	4	603	25	21	24	28	1.99
48914838--48915352	227	2.3	229	85	5	704	26	21	23	27	1.99
48915259--48915439	74	2.5	75	81	11	223	26	23	23	25	2.00
48915766--48915798	14	2.3	15	94	5	59	33	0	30	36	1.58
48916433--48916483	20	2.5	20	87	3	66	13	0	37	49	1.43
48917363--48917814	147	3.1	146	78	4	365	25	15	23	36	1.93
48917454--48917832	146	2.6	146	77	5	363	26	16	23	34	1.95
48919668--48919693	7	3.7	7	100	0	52	26	11	0	61	1.30
48919917--48919969	18	2.8	19	83	10	65	39	1	1	56	1.21
48920120--48920284	13	12.5	13	73	7	127	40	9	4	45	1.56
48920144--48920293	53	2.8	53	94	0	264	41	10	4	44	1.56
48920488--48920537	16	3.4	16	73	21	63	46	18	2	34	1.60
48920453--48920537	28	2.9	28	87	8	107	44	17	3	34	1.66
48920486--48920722	67	3.6	67	74	16	260	43	14	1	39	1.56
48920550--48920624	28	2.6	30	81	6	84	44	14	1	40	1.54
48920486--48920727	129	1.9	124	90	4	385	43	14	2	40	1.57
48920516--48920790	129	2.1	129	86	7	373	44	15	2	38	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48920751--48920841	16	5.3	16	77	13	92	50	19	2	27	1.59
48920774--48921277	9	57.8	9	67	15	222	44	20	2	32	1.64
48920754--48920911	78	2.1	75	82	13	186	48	20	1	29	1.60
48920772--48920938	25	6.6	25	72	11	108	46	20	2	30	1.64
48920875--48920979	25	4.2	25	77	11	115	42	20	2	33	1.67
48921072--48921250	34	5.2	34	74	12	123	44	20	1	32	1.62
48921076--48921150	16	4.4	16	85	12	105	48	20	0	32	1.50
48920778--48921347	309	1.9	307	98	0	1095	44	20	2	33	1.65
48921070--48921237	87	1.9	85	82	9	205	45	20	1	32	1.59
48926784--48926849	21	3.1	21	91	0	78	33	19	43	3	1.66
48937321--48937378	30	1.9	30	96	0	107	17	27	18	36	1.94
48944061--48944099	18	2.1	19	85	4	53	43	15	15	25	1.86
48945011--48945249	101	2.4	101	87	0	345	32	15	23	29	1.95
48948207--48948243	3	12.3	3	88	11	58	64	0	0	35	0.94
48948654--48948696	23	1.9	23	85	4	61	41	13	4	39	1.66
48956318--48956361	11	3.8	11	80	11	52	31	0	2	65	1.05
48958273--48958320	24	2.0	24	91	0	78	39	10	29	20	1.86
48958420--48958602	42	4.4	42	87	2	242	15	25	18	41	1.89
48958480--48958597	21	5.6	21	76	0	110	15	28	17	38	1.90
48958508--48958618	21	5.3	21	70	6	73	13	24	20	41	1.88
48958420--48958623	42	4.9	41	84	5	221	15	24	18	42	1.88
48964962--48964986	8	3.1	8	100	0	50	24	36	12	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48973923--48974062	72	1.9	75	81	7	171	32	11	14	41	1.81
48974777--48974817	20	2.0	20	86	9	57	46	2	4	46	1.37
48975122--48975169	24	2.0	24	88	8	71	37	4	2	56	1.30
48981317--48981349	16	2.1	16	100	0	66	21	36	12	30	1.90
48981838--48981890	21	2.5	21	87	0	70	32	30	5	32	1.81
48982707--48982789	20	4.3	20	67	14	57	38	1	15	44	1.55
48982712--48982792	18	4.3	18	70	20	58	37	1	14	46	1.53
48986187--48986216	15	1.9	16	93	6	53	33	0	0	66	0.92
48987462--48987511	25	2.0	26	88	11	77	44	2	4	50	1.32
48988465--48988521	22	2.4	24	77	14	64	54	7	0	38	1.28
48995181--48995716	180	3.0	180	97	0	1000	35	13	17	32	1.90
49000506--49000546	12	3.5	11	87	12	55	29	2	0	68	1.03
49002624--49002652	5	5.8	5	100	0	58	58	0	0	41	0.98
49003341--49003429	28	3.3	27	68	23	62	50	1	3	44	1.25
49004515--49004594	29	2.7	28	77	9	79	36	1	0	62	1.03
49004520--49004565	23	2.0	21	84	12	56	30	2	0	67	1.03
49004520--49004683	52	3.1	51	76	15	161	32	3	1	62	1.21
49004552--49004649	26	3.6	25	71	21	65	29	3	2	65	1.19
49006118--49006154	9	4.1	9	100	0	74	32	10	10	45	1.74
49006208--49006238	9	3.4	9	90	0	53	38	22	12	25	1.90
49008669--49008712	23	1.9	23	90	0	70	61	4	2	31	1.28
49008673--49008715	11	3.8	11	80	17	52	65	2	2	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49011287--49011311	2	12.5	2	100	0	50	48	0	0	52	1.00
49014517--49014584	16	4.2	16	90	7	102	27	0	33	38	1.57
49014517--49014584	32	2.1	32	94	0	118	27	0	33	38	1.57
49014714--49015023	157	2.0	157	93	0	530	44	3	4	47	1.41
49031340--49031529	101	1.9	103	86	7	280	33	7	3	56	1.43
49036889--49036975	42	2.1	42	100	0	174	39	14	4	41	1.67
49037580--49037633	26	2.1	26	100	0	108	55	12	3	27	1.54
49045028--49045147	61	2.0	61	93	0	204	46	35	2	15	1.60
49049670--49049696	13	2.1	13	100	0	54	33	22	22	22	1.97
49055016--49056783	883	2.0	883	100	0	3536	38	18	16	25	1.92
49063587--49063632	18	2.6	18	82	0	56	34	4	0	60	1.16
49063608--49063677	32	2.2	32	89	0	104	32	5	1	60	1.29
49063618--49063723	39	2.6	39	86	5	140	35	3	0	59	1.22
49063661--49063714	28	1.9	28	81	7	65	35	3	0	61	1.14
49063618--49063718	11	9.6	11	69	19	56	37	3	0	57	1.24
49066329--49066373	20	2.2	20	88	7	65	44	0	2	53	1.13
49071949--49072122	86	2.0	86	94	0	303	27	11	17	43	1.83
49089189--49089237	9	5.6	9	92	4	73	24	10	24	40	1.86
49089186--49089237	17	2.9	18	85	5	79	23	9	28	38	1.86
49092381--49092583	46	4.3	48	88	7	265	35	14	21	28	1.92
49092315--49092583	98	2.7	98	93	0	457	34	14	22	28	1.93
49092547--49092692	37	4.0	37	93	1	242	36	16	21	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49098162--49098324	42	3.8	43	75	15	135	33	26	17	23	1.96
49101596--49101625	12	2.6	12	94	5	53	0	13	0	86	0.57
49104259--49104418	47	3.3	47	79	11	166	19	23	18	38	1.93
49104259--49104418	72	2.2	71	81	10	175	19	23	18	38	1.93
49104259--49104410	25	6.3	24	80	9	134	19	24	18	38	1.93
49104502--49104560	31	1.9	31	89	0	91	54	3	20	22	1.59
49109147--49109171	8	3.1	8	100	0	50	12	52	12	24	1.72
49109399--49109436	11	3.2	12	92	7	60	0	52	0	47	1.00
49109923--49109972	23	2.1	25	88	7	77	32	4	8	56	1.47
49109909--49109980	23	3.1	23	79	13	58	31	5	9	52	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185