genome.fa.s5.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  177  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53663186--53663218	14	2.3	15	89	5	50	39	0	0	60	0.97
53663291--53663316	13	2.0	13	100	0	52	76	0	7	15	0.99
53671737--53671782	20	2.3	21	85	7	60	54	2	13	30	1.50
53678488--53678512	13	1.9	13	100	0	50	40	8	16	36	1.77
53682670--53682711	22	1.9	22	100	0	84	16	14	23	45	1.84
53689082--53689140	20	3.1	19	76	9	57	54	1	0	44	1.10
53689083--53689213	9	14.7	9	67	17	51	56	0	0	41	1.10
53691575--53691671	33	2.8	35	72	20	89	45	2	1	51	1.19
53692389--53692414	7	3.7	7	100	0	52	61	0	26	11	1.30
53694331--53694383	24	2.2	24	96	0	97	13	49	3	33	1.60
53697380--53697480	50	2.0	50	100	0	202	44	5	17	31	1.73
53697744--53697783	20	2.0	20	90	0	62	50	12	10	27	1.72
53697767--53697806	14	2.9	14	84	0	53	42	17	7	32	1.77
53702011--53702156	60	2.4	59	78	8	154	31	15	8	44	1.76
53708506--53708606	50	2.0	50	100	0	202	31	21	17	28	1.96
53711531--53711578	24	2.2	23	82	14	57	41	2	10	45	1.50
53721479--53721537	30	2.0	30	86	0	82	27	0	13	59	1.35
53721581--53721640	21	2.7	22	76	18	70	35	1	3	60	1.23
53723073--53723157	39	2.2	40	86	2	118	67	8	0	24	1.18
53723173--53723218	23	2.0	23	82	4	56	65	0	4	30	1.12
53730079--53730138	29	2.0	29	84	15	79	25	10	6	58	1.55
53733801--53733841	21	2.0	21	85	9	57	51	2	0	46	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53734687--53734715	7	4.1	7	100	0	58	44	0	0	55	0.99
53735222--53735253	10	3.2	10	100	0	64	56	0	0	43	0.99
53735996--53736025	10	2.8	11	90	10	53	50	0	0	50	1.00
53737724--53737781	30	1.9	31	85	3	82	50	5	6	37	1.52
53761281--53761322	20	2.1	20	86	0	57	64	7	7	21	1.43
53775830--53775905	37	2.1	37	97	0	143	31	25	15	27	1.96
53791566--53791611	22	2.1	22	100	0	92	45	21	4	28	1.71
53794558--53794621	26	2.4	26	75	17	60	54	3	0	42	1.16
53797160--53797202	22	2.0	22	95	0	77	39	2	9	48	1.48
53797676--53797715	20	2.0	21	85	5	55	47	10	2	40	1.50
53798244--53798270	12	2.2	12	100	0	54	92	0	7	0	0.38
53798682--53798710	10	2.7	11	89	10	51	0	24	0	75	0.80
53808756--53808817	21	3.0	21	92	0	106	24	19	29	27	1.98
53809830--53809893	31	2.1	31	82	5	87	21	9	17	51	1.73
53816213--53816242	13	2.3	13	100	0	60	46	0	36	16	1.47
53819317--53819345	3	9.7	3	100	0	58	34	0	31	34	1.58
53823531--53823630	29	3.5	28	78	5	101	40	19	25	16	1.91
53827246--53827292	24	2.0	24	84	16	62	51	17	0	31	1.46
53827956--53828006	26	1.9	27	88	4	77	1	23	5	68	1.22
53828021--53828096	28	2.7	28	80	11	84	47	1	1	50	1.18
53828015--53828067	8	6.8	8	86	4	72	50	0	1	47	1.12
53835175--53835270	31	3.1	31	95	3	174	31	9	13	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53845137--53845194	28	2.1	27	90	6	91	51	3	10	34	1.53
53846458--53846497	17	2.4	17	87	8	55	35	5	0	60	1.19
53846444--53846498	19	3.0	19	71	17	53	38	3	1	56	1.28
53850311--53850347	16	2.4	16	86	8	51	29	0	0	70	0.88
53856555--53856594	18	2.2	19	86	4	55	60	7	0	32	1.25
53857525--53857576	23	2.2	24	93	3	88	46	7	19	26	1.77
53861287--53861385	43	2.3	43	84	3	137	40	16	15	28	1.88
53862105--53862137	17	1.9	17	100	0	66	54	18	15	12	1.71
53864207--53864244	18	2.2	18	85	4	51	55	2	0	42	1.14
53864294--53864335	18	2.4	17	81	14	50	47	0	2	50	1.14
53869246--53869304	31	1.9	31	86	6	84	49	3	6	40	1.46
53896509--53896565	3	18.7	3	92	3	96	33	1	0	64	1.04
53896631--53896667	15	2.6	15	83	8	51	32	0	0	67	0.91
53896682--53896728	24	2.0	24	84	8	62	44	8	4	42	1.54
53896710--53896748	20	2.0	20	89	0	60	35	5	2	56	1.35
53898197--53898248	25	2.1	25	100	0	104	69	3	3	23	1.22
53898563--53898611	3	16.3	3	91	0	80	63	2	0	34	1.06
53899621--53899665	15	2.9	16	76	6	56	2	4	42	51	1.34
53907483--53907511	10	2.7	11	89	10	51	75	0	24	0	0.80
53908914--53909212	93	3.2	93	99	0	582	37	7	15	40	1.75
53909308--53909831	107	5.0	107	94	2	847	35	15	14	33	1.89
53909940--53910607	106	6.2	108	83	10	789	29	15	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53910156--53910589	114	3.9	114	85	9	640	31	16	14	38	1.89
53909940--53910610	219	3.1	219	86	11	902	29	15	14	40	1.86
53910590--53910616	12	2.2	12	100	0	54	0	7	0	92	0.38
53917977--53918043	29	2.3	29	78	2	71	41	19	7	31	1.79
53954748--53954778	16	1.9	16	93	0	53	41	6	32	19	1.77
53955007--53955041	18	2.0	17	88	5	52	54	0	0	45	0.99
53955071--53955111	21	2.0	21	100	0	82	56	9	0	34	1.32
53957425--53957453	11	2.5	12	94	5	51	55	0	3	41	1.17
53957414--53957489	28	2.6	28	85	8	91	59	0	2	38	1.12
53957420--53957538	39	3.3	38	72	24	123	61	0	3	35	1.13
53957439--53957530	28	3.2	27	78	15	80	61	0	2	35	1.08
53957478--53957542	16	4.0	16	70	9	51	63	0	3	33	1.10
53961318--53961362	22	2.0	22	91	0	72	20	26	37	15	1.92
53969383--53969422	19	2.1	19	95	0	71	32	7	30	30	1.85
53983901--53983947	25	1.9	25	82	4	60	17	6	21	55	1.64
53984154--53984311	79	2.0	79	97	0	298	37	21	9	31	1.86
53985528--53985568	3	13.7	3	92	0	64	2	36	26	34	1.70
53985525--53985570	21	2.2	21	96	0	83	6	34	23	34	1.81
53986455--53986510	20	2.8	20	83	5	69	67	0	7	25	1.15
53986671--53986727	6	9.3	6	79	11	62	17	5	0	77	0.95
53986954--53986999	24	2.0	23	86	4	65	60	8	0	30	1.26
53987144--53987218	17	4.0	17	77	17	78	26	1	1	70	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53987156--53987208	22	2.3	23	81	12	65	24	1	1	71	1.06
53987177--53987238	26	2.3	27	83	5	72	27	1	3	67	1.15
53989908--53989933	3	8.7	3	100	0	52	34	30	0	34	1.58
53994992--53995031	21	1.9	21	84	0	53	57	7	7	27	1.53
54003868--54003941	31	2.4	31	81	2	87	41	13	12	32	1.81
54006564--54006672	47	2.2	49	80	6	123	22	13	27	35	1.92
54007196--54007309	25	4.6	25	86	0	156	21	21	18	39	1.93
54007196--54007309	50	2.3	50	90	0	174	21	21	18	39	1.93
54007271--54007327	25	2.4	25	80	8	66	15	19	22	42	1.89
54007271--54007350	22	3.5	24	78	11	62	18	18	20	42	1.89
54008522--54008593	5	14.8	5	74	21	64	38	1	4	55	1.28
54008551--54008593	19	2.3	19	92	8	70	41	2	0	55	1.12
54008603--54008636	17	2.0	17	94	0	59	79	0	17	2	0.86
54008603--54008636	9	3.9	9	84	7	52	79	0	17	2	0.86
54009206--54009263	30	1.9	30	89	0	89	41	3	24	31	1.71
54009603--54009688	46	1.9	44	90	4	136	33	13	23	29	1.93
54009605--54009729	44	2.8	45	81	4	135	34	14	23	28	1.94
54016967--54016991	13	1.9	13	100	0	50	60	16	0	24	1.36
54017817--54017877	30	2.0	30	93	0	104	42	11	14	31	1.81
54018387--54018632	121	2.0	122	97	0	467	47	11	9	31	1.72
54020298--54020349	25	2.1	24	89	3	77	26	30	15	26	1.96
54021359--54021415	28	2.1	26	84	12	71	43	3	0	52	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54023507--54023549	17	2.8	16	80	20	56	41	0	2	55	1.12
54027555--54027581	6	4.5	6	100	0	54	0	33	37	29	1.58
54033347--54033371	2	12.5	2	100	0	50	0	48	0	52	1.00
54035278--54035370	18	5.2	18	93	0	159	26	24	17	31	1.97
54035278--54035370	36	2.6	36	98	0	177	26	24	17	31	1.97
54050717--54050762	23	2.0	23	95	0	83	32	43	2	21	1.65
54050878--54051213	170	2.0	170	96	0	618	29	20	10	39	1.86
54052464--54052503	9	4.4	9	90	0	53	47	22	5	25	1.71
54052611--54052651	5	7.6	5	84	15	55	4	0	53	41	1.22
54052610--54052644	18	1.9	18	100	0	70	8	0	51	40	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185