genome.fa.s5.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  40  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11698505--11698691	81	2.3	81	85	4	243	20	17	18	43	1.88
11705111--11705187	26	2.9	26	84	1	91	41	15	19	23	1.89
11705147--11705203	27	2.2	26	80	3	60	40	17	19	22	1.91
11705230--11705295	32	2.1	32	94	0	114	28	16	18	36	1.93
11705389--11705692	108	2.8	108	87	4	402	20	15	19	45	1.86
11705389--11705759	27	13.8	27	77	7	301	20	15	18	45	1.86
11709190--11709235	21	2.1	23	84	8	60	36	15	10	36	1.82
11709664--11709795	50	2.6	52	77	7	144	36	12	15	34	1.86
11721573--11721634	30	2.0	32	84	12	85	77	8	4	9	1.12
11724031--11724192	44	3.4	43	66	26	105	32	17	20	30	1.95
11724011--11724250	98	2.4	98	95	0	417	32	18	20	28	1.96
11724296--11724761	50	9.3	50	69	4	301	33	22	19	24	1.97
11724284--11724836	100	5.5	98	80	4	536	32	23	20	23	1.98
11733966--11734009	23	1.9	22	82	17	54	36	25	0	38	1.56
11734054--11734147	45	2.1	45	91	0	152	31	24	18	25	1.97
11734153--11734336	50	3.7	50	79	3	217	29	28	17	23	1.97
11734151--11734334	101	1.8	101	91	2	307	30	27	17	23	1.97
11737409--11737568	41	3.9	41	76	14	166	23	19	27	29	1.98
11741283--11741341	20	2.9	19	79	16	66	25	28	11	33	1.91
11743531--11743569	18	2.2	17	86	13	53	33	0	20	46	1.51
11743795--11743914	23	5.3	23	84	6	154	23	20	25	31	1.98
11743794--11743914	45	2.6	45	90	2	188	23	19	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11751224--11751272	20	2.5	20	81	15	66	12	24	6	57	1.58
11752628--11752805	27	6.6	27	84	3	205	29	28	15	26	1.96
11752649--11752804	82	1.9	81	88	3	233	29	28	15	26	1.96
11760935--11761111	27	6.5	27	78	6	144	29	28	15	25	1.96
11765642--11766023	191	2.0	191	100	0	764	26	16	22	34	1.95
11767892--11768029	50	2.8	49	85	4	168	26	23	30	20	1.98
11767939--11768040	50	2.0	50	88	0	150	24	26	32	16	1.96
11768340--11768389	20	2.5	20	81	12	66	58	6	24	12	1.56
11777456--11777520	32	2.0	32	100	0	130	40	6	12	41	1.67
11790562--11790639	38	2.1	38	97	0	147	24	16	25	33	1.96
11792956--11793025	30	2.3	30	92	0	122	18	32	32	15	1.93
11794557--11794595	20	2.0	20	100	0	78	30	10	20	38	1.86
11800744--11800923	39	4.6	39	89	0	261	32	2	20	45	1.63
11804199--11804264	21	2.9	24	70	21	68	30	12	12	45	1.78
11804459--11804504	10	4.9	9	86	7	65	56	19	0	23	1.42
11804459--11804504	19	2.4	19	85	7	67	56	19	0	23	1.42
11804607--11804645	19	2.1	19	95	0	69	51	10	10	28	1.68
11804626--11804699	35	2.1	35	92	0	121	40	16	9	33	1.80
11804777--11804817	20	2.0	21	85	4	57	39	14	14	31	1.87
11813180--11813233	25	2.2	25	83	12	67	55	0	3	40	1.17
11813237--11813297	30	2.2	26	80	13	70	49	9	9	31	1.69
11817650--11817920	49	5.5	49	72	12	250	23	19	20	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11817636--11818118	50	9.6	49	75	9	311	22	24	21	30	1.99
11817636--11817956	99	3.2	99	98	0	615	23	21	20	34	1.97
11821215--11821446	56	4.1	56	98	0	446	45	9	21	22	1.81
11821964--11822126	39	4.1	39	79	11	147	25	22	27	23	2.00
11821964--11822107	39	3.6	41	81	13	160	25	22	27	24	2.00
11821964--11822113	79	1.9	79	81	8	180	26	22	28	23	1.99
11827994--11828341	150	2.3	154	81	6	388	22	28	22	26	1.99
11827995--11828341	50	6.8	50	81	5	342	22	28	22	26	1.99
11828678--11828735	30	1.9	30	85	0	80	31	22	6	39	1.80
11838927--11838987	23	2.7	23	97	0	113	11	8	22	57	1.60
11838954--11839020	35	1.9	35	96	0	125	13	8	19	58	1.61
11838929--11839001	12	6.2	12	70	17	64	10	8	23	57	1.59
11839959--11839985	11	2.5	11	100	0	54	29	0	0	70	0.88
11840078--11840116	16	2.5	16	87	4	53	25	5	0	69	1.09
11840211--11840243	16	2.1	16	100	0	66	24	0	0	75	0.80
11839845--11840474	131	5.0	127	90	5	977	44	4	3	47	1.40
11840341--11840374	16	2.1	16	100	0	68	23	0	0	76	0.79
11839845--11840474	258	2.5	253	91	2	1005	44	4	3	47	1.40
11842104--11842175	30	2.4	30	85	0	90	27	34	8	29	1.86
11844274--11844378	49	2.1	49	91	0	165	29	8	10	51	1.66
11845757--11846067	120	2.6	120	95	2	563	42	2	3	51	1.32
11845968--11846001	17	2.0	17	94	0	59	38	0	2	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11845903--11846074	41	4.3	39	65	20	104	41	2	4	52	1.33
11846260--11846367	46	2.4	44	84	3	126	38	27	5	27	1.79
11858425--11858461	17	2.2	17	90	0	56	27	13	8	51	1.69
11862208--11862275	35	1.9	35	91	5	111	19	19	19	42	1.89
11862921--11863011	29	3.1	29	95	0	155	37	15	27	19	1.92
11866788--11866972	51	3.6	51	75	3	151	23	16	27	33	1.95
11866976--11867070	45	2.1	45	86	0	136	25	16	24	33	1.96
11871688--11871807	25	4.8	25	83	4	118	23	23	20	32	1.98
11875054--11875199	43	3.4	43	73	10	147	36	22	16	23	1.94
11875009--11875245	84	2.8	84	82	6	284	35	23	16	25	1.95
11875011--11875240	42	5.5	42	72	14	170	36	22	16	25	1.94
11899268--11899685	136	3.1	135	90	3	642	40	8	6	45	1.59
11899747--11899779	17	1.9	17	93	0	57	45	9	0	45	1.35
11910267--11910479	72	3.0	72	98	0	408	35	14	22	27	1.93
11913580--11913604	12	2.1	12	100	0	50	8	16	40	36	1.77
11914460--11914489	16	1.9	16	93	6	53	50	20	0	30	1.49
11917149--11918452	325	4.0	325	99	0	2527	24	25	12	37	1.91
11918447--11918560	45	2.5	45	88	0	156	21	20	14	42	1.88
11921570--11921654	42	2.0	40	84	10	109	48	2	43	5	1.40
11923701--11923730	14	2.2	14	94	5	53	66	0	13	20	1.24
11924601--11924813	25	8.6	25	74	8	175	16	27	19	36	1.94
11924623--11924813	74	2.6	74	80	2	195	16	27	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11924615--11924790	49	3.6	50	76	12	143	16	26	19	36	1.93
11924722--11924847	49	2.5	50	81	6	132	19	24	19	36	1.95
11926146--11926185	20	2.0	21	90	5	64	30	7	15	47	1.72
11939968--11940061	47	2.0	47	97	0	179	32	11	12	42	1.79
11943199--11943259	30	2.0	30	96	0	113	52	9	14	22	1.71
11945309--11945687	50	7.5	50	84	3	233	24	29	19	27	1.98
11945345--11945684	50	6.7	50	84	3	385	23	30	19	26	1.98
11949609--11949641	10	3.3	10	91	0	57	33	30	0	36	1.58
11949641--11949770	43	3.0	42	79	4	145	33	14	22	29	1.94
11957299--11957476	27	6.6	27	84	7	209	30	28	14	26	1.95
11957320--11957474	82	1.9	80	88	6	231	30	27	14	27	1.95
11965619--11965915	29	10.2	29	85	0	396	36	12	28	23	1.91
11965619--11965913	58	5.1	58	91	0	446	36	12	28	23	1.91
11977937--11978113	27	6.5	27	81	3	169	26	15	27	29	1.96
11977937--11978092	82	1.9	81	85	3	215	27	16	26	29	1.96
11977929--11978113	82	2.3	81	78	2	210	27	15	27	30	1.96
11982133--11982317	101	1.8	102	87	3	275	23	17	26	32	1.97
11982129--11982315	51	3.7	50	73	4	178	24	17	26	32	1.97
11982321--11982415	45	2.1	45	92	0	154	27	18	23	30	1.98
11988184--11988278	45	2.1	45	94	0	163	28	18	22	30	1.97
11992437--11992491	23	2.4	23	96	0	101	30	12	25	30	1.93
11996333--11996400	33	2.1	33	86	5	93	10	25	5	58	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11996374--11996421	18	2.6	19	84	12	57	8	27	4	60	1.44
12001325--12001649	29	11.2	29	82	0	380	36	14	27	22	1.92
12001320--12001641	116	2.8	116	92	0	509	36	14	27	22	1.92
12007366--12007469	51	2.0	51	98	0	199	28	16	13	41	1.86
12007678--12007838	43	3.8	44	79	12	183	33	23	19	23	1.97
12007676--12007878	42	4.8	42	77	12	191	33	23	18	23	1.97
12007676--12007878	85	2.4	85	87	1	282	33	23	18	23	1.97
12007853--12007904	26	2.0	26	100	0	104	30	30	19	19	1.96
12015201--12015510	42	7.3	42	73	10	247	35	24	16	23	1.95
12015191--12015512	85	3.8	85	91	0	448	34	24	17	23	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185