genome.fa.s5.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  59  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18568802--18569079	41	6.8	41	78	5	242	31	24	24	19	1.98
18568802--18569079	82	3.4	81	79	4	272	31	24	24	19	1.98
18568823--18569079	123	2.1	122	81	8	290	31	25	24	18	1.98
18569111--18569267	41	3.9	38	76	12	138	16	22	24	36	1.94
18569256--18569281	12	2.2	12	100	0	52	46	30	15	7	1.74
18569301--18569365	3	21.7	3	100	0	130	0	33	0	66	0.92
18569364--18569394	3	10.3	3	100	0	62	32	35	0	32	1.58
18569755--18569863	29	3.8	29	85	4	141	57	11	7	22	1.59
18571743--18571772	12	2.4	13	94	5	53	20	6	6	66	1.38
18582870--18582906	10	3.6	10	92	3	56	89	5	5	0	0.60
18598236--18598265	7	4.1	7	91	8	51	16	0	0	83	0.65
18598236--18598276	15	2.7	15	88	7	57	19	0	2	78	0.87
18599113--18600191	44	23.9	44	70	10	557	28	20	18	32	1.96
18599124--18600188	137	7.9	134	72	10	482	28	20	18	32	1.97
18599167--18600145	92	10.8	89	71	13	392	28	20	18	32	1.96
18599298--18600145	92	9.4	91	73	11	483	28	20	18	32	1.96
18599123--18599650	227	2.3	228	79	3	548	26	19	20	33	1.96
18599152--18600188	181	5.7	181	85	2	1190	28	20	18	32	1.96
18599121--18600194	89	11.9	88	75	11	516	28	20	18	32	1.97
18604466--18604704	50	4.7	50	81	5	248	28	21	28	22	1.99
18606005--18606062	12	4.6	12	79	10	62	75	5	1	17	1.06
18605993--18606062	26	2.6	27	86	6	88	74	4	2	18	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18607582--18607680	23	4.3	24	75	6	89	26	21	22	30	1.99
18607582--18607680	46	2.2	46	78	7	110	26	21	22	30	1.99
18607884--18607930	23	2.0	25	83	8	62	40	0	21	38	1.53
18615194--18615241	25	1.9	25	91	8	80	31	22	31	14	1.94
18615199--18615303	49	2.1	49	82	6	124	32	22	28	16	1.96
18615269--18615413	25	5.8	25	70	16	104	32	20	26	20	1.97
18615344--18615413	26	2.8	24	80	8	77	35	21	24	18	1.95
18615333--18615435	25	4.2	25	72	18	74	33	22	24	19	1.97
18617519--18617599	26	3.3	25	75	13	78	34	23	22	19	1.96
18635426--18635476	21	2.4	21	78	15	61	68	3	9	17	1.33
18637246--18637275	13	2.3	13	94	0	51	56	6	3	33	1.42
18637956--18637990	12	2.9	12	95	0	61	0	45	22	31	1.53
18637923--18638048	66	1.9	66	81	3	155	20	33	23	23	1.97
18637965--18638148	54	3.4	54	87	2	255	19	32	22	25	1.97
18637977--18638198	108	2.1	108	82	8	265	21	31	22	24	1.98
18640091--18640139	20	2.5	20	81	15	66	12	24	4	59	1.50
18640341--18640485	50	2.9	49	82	5	168	24	25	21	28	1.99
18645025--18645130	40	2.7	40	86	4	135	41	25	18	14	1.88
18645108--18645152	21	2.1	21	95	0	81	44	15	24	15	1.85
18659891--18659915	13	1.9	13	100	0	50	24	12	16	48	1.79
18665170--18665207	19	2.0	20	84	5	51	47	18	5	28	1.70
18666949--18667011	19	3.3	19	66	25	51	50	1	7	39	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18668717--18668801	45	1.9	44	85	2	116	24	28	22	24	1.99
18668728--18669398	44	15.5	44	70	8	313	27	24	18	28	1.98
18668784--18669420	174	3.7	172	87	2	911	27	23	18	29	1.98
18668776--18669358	86	6.7	85	70	6	287	28	24	19	28	1.98
18669389--18669793	129	3.1	129	93	0	666	25	22	19	32	1.98
18669756--18670051	44	6.7	44	85	2	362	25	25	19	30	1.98
18671272--18671320	8	6.7	7	81	13	55	14	10	0	75	1.04
18671264--18671312	14	3.5	13	78	15	53	14	10	0	75	1.04
18671265--18671312	15	3.2	15	85	5	62	12	10	0	77	1.00
18671263--18671315	21	2.5	21	90	3	79	15	11	0	73	1.09
18671272--18671321	15	3.3	16	83	13	70	14	10	0	76	1.03
18672172--18672262	6	14.3	6	72	15	58	7	12	3	76	1.11
18672178--18672219	19	2.3	18	87	4	57	9	9	0	80	0.89
18672266--18672328	6	10.3	6	89	3	90	20	0	15	63	1.31
18672197--18672286	41	2.2	40	80	5	101	12	7	6	73	1.25
18677113--18677175	19	3.3	19	66	25	51	50	1	7	39	1.41
18678189--18678233	19	2.4	18	82	17	56	0	15	13	71	1.15
18681632--18681711	36	2.2	36	100	0	160	50	7	13	28	1.69
18682961--18683020	17	3.4	17	73	13	50	50	1	1	46	1.21
18685559--18685588	14	2.1	14	93	0	51	33	0	0	66	0.92
18687528--18687669	34	4.2	33	82	0	158	33	11	13	41	1.81
18687531--18687664	68	2.0	67	86	1	187	34	11	12	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18687572--18687680	34	3.2	33	88	2	146	33	14	11	39	1.83
18687549--18687680	67	2.0	68	83	4	169	34	13	12	39	1.82
18687758--18687919	45	3.6	45	76	1	173	27	16	21	35	1.94
18687947--18687989	22	2.0	22	85	0	59	32	18	16	32	1.93
18688832--18688865	17	2.0	17	88	11	52	52	14	5	26	1.64
18692576--18692659	32	2.6	32	81	5	107	27	2	19	51	1.59
18693549--18693601	26	2.0	26	100	0	106	50	11	15	22	1.75
18694093--18694130	19	2.0	19	94	0	67	55	15	5	23	1.61
18694624--18694682	7	8.3	7	74	23	52	62	0	0	37	0.95
18694621--18694689	35	2.0	35	86	11	97	65	0	0	34	0.93
18694776--18694837	9	6.6	9	76	12	54	67	3	4	24	1.25
18694776--18694837	28	2.2	28	94	2	106	67	3	4	24	1.25
18695332--18695369	18	2.1	18	90	0	58	34	0	0	65	0.93
18695332--18695368	19	2.0	18	89	5	56	32	0	0	67	0.91
18695646--18695673	14	2.0	14	100	0	56	7	14	50	28	1.69
18699613--18699721	34	3.2	34	84	0	137	34	11	11	43	1.75
18701147--18701184	20	2.0	20	84	5	51	31	2	5	60	1.33
18703182--18703264	36	2.3	36	83	4	87	30	10	25	33	1.90
18709061--18709132	35	2.0	36	89	2	110	27	9	25	37	1.87
18709549--18709664	40	2.9	40	87	3	155	32	21	23	22	1.98
18709548--18709684	40	3.4	40	82	6	143	36	20	22	20	1.95
18709701--18709894	41	4.7	41	83	1	219	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18710367--18710401	7	5.0	7	85	0	52	20	0	51	28	1.47
18710430--18710561	63	2.1	63	94	0	228	31	0	21	47	1.51
18710948--18710983	18	2.0	18	94	0	63	44	13	16	25	1.85
18710949--18710985	9	4.1	9	85	0	56	45	13	13	27	1.81
18712697--18712983	147	2.0	144	85	4	389	40	14	12	32	1.83
18721267--18721306	18	2.2	18	91	8	64	65	7	0	27	1.20
18721552--18721626	38	1.9	39	81	7	91	44	14	5	36	1.68
18721834--18721909	39	1.9	39	94	0	134	28	6	18	46	1.74
18722434--18722472	19	2.1	19	100	0	78	15	15	5	64	1.46
18725530--18726119	43	13.7	43	87	0	813	23	32	18	25	1.98
18725530--18726069	86	6.3	86	96	0	945	23	32	19	25	1.98
18729221--18729254	4	8.0	4	90	9	50	23	0	2	73	0.97
18729204--18729263	22	2.7	22	73	19	61	26	0	6	66	1.16
18730969--18731171	43	4.7	43	81	0	228	21	18	30	30	1.97
18734131--18734402	68	4.0	68	85	1	330	36	17	22	24	1.95
18742325--18742502	27	6.6	27	84	3	205	29	28	15	26	1.96
18742346--18742501	82	1.9	81	88	3	233	29	28	15	26	1.96
18749985--18750110	28	4.5	28	96	1	227	33	29	11	25	1.92
18761811--18761927	25	4.7	25	75	11	89	30	20	20	28	1.98
18761871--18761952	25	3.3	24	78	11	94	34	15	23	26	1.95
18761866--18761942	25	3.1	25	81	10	95	31	19	22	27	1.98
18764250--18764318	32	2.2	32	81	5	77	21	10	13	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18767394--18768134	369	2.0	369	96	0	1365	27	19	14	38	1.91
18775914--18776050	50	2.7	50	78	0	130	28	21	27	22	1.99
18783298--18783354	28	2.0	28	96	0	105	52	15	7	24	1.67
18786160--18786273	56	2.0	56	93	0	192	26	19	15	38	1.92
18788267--18788300	18	1.9	18	88	5	52	55	5	5	32	1.48
18805212--18805245	8	4.0	8	88	11	50	47	0	0	52	1.00
18806095--18806147	15	3.6	14	75	7	52	67	0	1	30	1.01
18806126--18806195	19	3.6	18	77	21	63	65	1	1	31	1.10
18806102--18806195	18	4.8	19	71	17	61	63	1	1	34	1.08
18807730--18807763	7	4.9	7	100	0	68	73	0	0	26	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185