genome.fa.s5.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  22  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6349300--6349369	36	2.0	35	85	2	95	24	20	10	45	1.81
6349484--6349508	5	5.0	5	100	0	50	80	0	0	20	0.72
6349751--6349912	42	3.9	41	91	1	234	21	21	20	35	1.96
6349751--6349912	83	2.0	83	87	2	236	21	21	20	35	1.96
6350292--6350342	21	2.4	21	86	0	75	1	45	17	35	1.60
6352266--6352607	9	37.3	9	78	3	351	33	2	16	48	1.59
6352280--6352581	64	4.9	64	82	9	347	32	1	16	49	1.56
6352344--6352581	91	2.6	91	97	2	336	32	0	15	51	1.50
6352293--6352593	91	3.2	91	76	10	237	32	2	16	48	1.59
6352671--6352721	21	2.4	21	93	0	84	39	9	15	35	1.81
6352642--6352818	42	4.5	39	66	23	111	40	4	12	42	1.63
6352576--6352816	116	2.1	116	100	0	482	39	4	12	43	1.64
6352940--6352977	16	2.4	16	91	4	60	52	5	0	42	1.24
6352974--6353001	13	2.2	13	100	0	56	46	7	7	39	1.59
6352970--6353019	17	3.2	17	81	18	72	52	6	6	36	1.51
6356144--6356192	15	3.3	15	76	23	59	36	46	2	14	1.56
6356147--6356216	15	5.0	14	72	20	58	37	44	1	17	1.57
6356147--6356216	28	2.5	28	84	11	90	37	44	1	17	1.57
6356377--6356439	7	8.9	7	81	11	58	33	50	0	15	1.45
6356380--6356438	14	4.2	14	78	8	66	32	50	0	16	1.46
6356356--6356469	42	2.7	42	79	2	131	41	39	0	19	1.51
6358253--6358318	7	10.0	7	76	12	59	34	37	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6358258--6358282	13	1.9	13	100	0	50	32	52	0	16	1.44
6358256--6358318	32	2.0	32	84	6	83	36	34	0	28	1.58
6383114--6383266	62	2.5	62	78	2	164	21	28	24	25	1.99
6390887--6390936	25	2.0	26	88	4	75	14	10	12	64	1.51
6395991--6396038	24	2.0	24	84	8	62	45	16	16	20	1.85
6398575--6398608	16	2.2	15	89	5	50	73	0	0	26	0.83
6401380--6401404	13	1.9	13	100	0	50	0	16	40	44	1.47
6409923--6409950	14	2.0	14	100	0	56	35	21	7	35	1.81
6411734--6411760	8	3.4	8	100	0	54	33	0	0	66	0.92
6420212--6420266	23	2.4	23	81	0	65	16	10	14	58	1.64
6425418--6425473	21	2.7	21	91	0	85	30	8	32	28	1.88
6428461--6428522	6	10.2	6	92	3	106	37	0	62	0	0.95
6428461--6428530	18	3.9	18	90	3	61	38	0	61	0	0.96
6436157--6436203	21	2.2	22	92	3	78	21	19	38	21	1.94
6438926--6438960	2	17.5	2	93	0	61	0	45	0	54	0.99
6444153--6444191	20	2.0	20	94	0	69	43	15	12	28	1.83
6444155--6444203	20	2.5	20	86	6	64	40	20	14	24	1.89
6445191--6445238	24	2.0	24	100	0	96	45	8	20	25	1.79
6446511--6446658	20	7.6	20	73	5	97	40	17	7	34	1.78
6446497--6446676	57	3.1	58	82	5	195	40	17	7	34	1.78
6446552--6446658	20	5.5	19	77	7	99	41	16	7	34	1.77
6446785--6446814	15	2.0	15	100	0	60	26	0	20	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6446857--6446910	28	2.0	28	85	10	76	68	0	1	29	1.00
6448010--6448048	17	2.3	17	86	0	51	43	0	15	41	1.46
6451916--6451966	25	2.0	25	88	0	75	35	1	19	43	1.63
6459570--6459960	192	2.0	192	86	3	547	31	8	25	35	1.85
6461511--6461541	16	1.9	16	93	0	53	32	0	6	61	1.21
6466046--6466070	12	2.1	12	100	0	50	20	0	16	64	1.30
6480371--6480407	17	2.2	17	90	0	56	29	21	5	43	1.75
6493021--6493053	16	2.1	16	100	0	66	24	6	0	69	1.10
6493025--6493285	22	12.5	22	74	18	179	22	12	1	62	1.39
6493046--6493152	18	5.6	18	78	16	108	19	11	3	65	1.39
6492985--6493357	23	16.8	22	66	21	149	23	12	1	62	1.40
6493046--6493285	107	2.3	105	73	15	92	22	13	2	62	1.41
6492991--6493357	39	8.3	43	75	15	213	22	12	1	62	1.40
6493084--6493345	89	3.0	84	74	17	203	22	14	1	61	1.42
6493064--6493340	5	53.0	5	69	20	126	22	14	1	62	1.41
6493064--6493357	45	6.6	45	78	13	290	21	13	2	62	1.41
6493462--6493520	25	2.3	26	88	5	93	42	8	3	45	1.51
6499622--6499659	19	2.0	20	84	5	51	57	13	7	21	1.60
6501612--6501804	50	3.8	50	87	0	260	26	21	30	21	1.98
6514968--6515003	15	2.3	15	95	4	63	47	0	8	44	1.33
6514981--6515037	29	2.0	28	83	10	71	50	0	8	40	1.33
6518574--6518598	3	8.3	3	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6528240--6528266	7	3.9	7	100	0	54	29	40	0	29	1.57
6528582--6528625	21	2.1	21	95	0	79	0	15	34	50	1.45
6528977--6529071	30	3.2	29	68	11	93	26	21	4	48	1.68
6529205--6529265	18	3.4	18	77	8	63	60	3	0	36	1.13
6530716--6530889	87	2.0	86	97	1	330	30	20	17	30	1.96
6536335--6536371	18	2.1	18	89	0	56	70	5	0	24	1.08
6536424--6536463	13	2.9	15	78	17	50	40	0	0	60	0.97
6538970--6539023	15	3.4	15	73	14	54	37	1	18	42	1.61
6538962--6539028	33	2.0	33	94	0	116	35	2	17	43	1.65
6545076--6545251	87	2.0	87	89	0	271	35	14	30	19	1.92
6558388--6558431	22	2.0	23	86	4	63	22	40	29	6	1.80
6560988--6561203	67	3.2	68	83	5	251	36	14	23	25	1.93
6563773--6563835	32	1.9	33	90	3	101	33	4	19	42	1.72
6566562--6566590	14	2.0	15	93	6	51	89	10	0	0	0.48
6570247--6570304	30	1.9	30	82	3	71	46	8	6	37	1.61
6570967--6571001	17	2.1	17	89	10	54	40	20	5	34	1.76
6573885--6574146	39	6.7	40	87	7	337	25	22	27	24	2.00
6585649--6585687	18	2.2	18	95	0	69	46	20	17	15	1.84
6587793--6587985	50	3.8	50	84	2	244	25	20	30	22	1.98
6588270--6589073	402	2.0	402	99	0	1599	32	10	19	37	1.87
6593629--6593817	43	4.4	42	80	1	180	33	29	15	21	1.94
6593629--6593795	86	1.9	86	84	2	219	31	29	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6593631--6593815	86	2.2	86	82	3	212	32	29	16	21	1.95
6597580--6597606	13	2.1	13	100	0	54	29	7	7	55	1.55
6609303--6609377	25	3.1	25	77	14	102	34	8	6	50	1.58
6609307--6609377	23	3.0	24	78	14	92	33	8	7	50	1.60
6610556--6610620	23	2.7	26	88	11	70	47	24	7	20	1.76
6610565--6610637	23	3.2	23	92	7	114	49	24	8	17	1.74
6610580--6610649	23	3.1	22	82	10	63	55	21	5	17	1.62
6610965--6611119	77	2.0	77	98	0	301	29	18	18	32	1.95
6611422--6611459	17	2.2	17	100	0	76	65	10	13	10	1.47
6612589--6612624	9	4.0	9	89	10	56	66	0	0	33	0.92
6612634--6612797	74	2.2	73	88	3	231	29	25	20	25	1.99
6612969--6613541	114	5.1	114	82	7	672	26	24	20	28	1.99
6613083--6613515	217	2.0	216	89	0	668	25	24	20	29	1.99
6612696--6613541	331	2.5	331	89	0	1298	26	25	20	27	1.99
6613378--6613710	169	2.0	170	84	6	435	27	23	23	26	2.00
6617078--6617107	14	2.1	14	100	0	60	30	0	13	56	1.37
6619095--6619157	28	2.2	28	91	2	99	41	6	23	28	1.79
6626024--6626048	12	2.1	12	100	0	50	52	8	16	24	1.70
6628641--6628713	26	2.8	26	87	0	101	27	20	12	39	1.88
6628855--6628889	12	2.9	12	86	0	52	17	14	0	68	1.21
6632711--6632751	20	2.0	20	85	0	55	26	9	26	36	1.88
6634961--6635012	27	1.9	27	96	0	95	55	15	7	21	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6637897--6637928	17	1.9	16	93	6	55	9	15	0	75	1.05
6641464--6641494	7	4.4	7	100	0	62	41	0	0	58	0.98
6644988--6645025	20	2.0	18	90	10	58	34	0	0	65	0.93
6649422--6649547	25	5.1	25	72	14	95	19	25	19	36	1.94
6649426--6649565	50	2.9	48	76	7	131	20	23	20	35	1.96
6649477--6649559	25	3.3	25	81	0	94	22	26	20	30	1.98
6664351--6664527	40	4.4	40	93	2	302	22	19	29	28	1.98
6664351--6664547	80	2.5	80	89	1	252	23	21	27	27	1.99
6669602--6669745	40	3.6	40	83	5	175	23	25	25	25	2.00
6670932--6671007	38	2.0	38	100	0	152	31	23	13	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185