genome.fa.s5.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  115  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35944442--35944536	48	2.0	48	93	4	165	8	34	30	26	1.86
35947387--35947445	22	2.7	21	80	12	73	32	3	20	44	1.68
35949311--35949396	43	2.0	43	95	0	154	29	24	15	31	1.95
35952576--35952634	22	2.7	21	80	12	73	32	3	20	44	1.68
35956316--35956650	42	7.9	42	77	8	295	18	27	33	20	1.96
35958544--35958993	225	2.0	225	94	0	794	20	24	27	28	1.99
35966626--35966948	42	7.6	43	74	10	155	17	27	34	19	1.95
35966681--35966959	42	6.6	42	74	10	246	17	28	35	18	1.94
35967215--35967690	43	11.2	42	79	5	352	14	30	35	19	1.91
35967343--35967667	85	3.8	85	75	10	304	13	31	36	18	1.90
35967220--35967675	85	5.4	86	73	9	258	14	31	35	19	1.91
35971365--35972037	42	15.9	42	73	10	541	18	28	32	20	1.96
35971504--35971780	127	2.2	125	82	10	334	17	26	34	20	1.95
35971417--35971988	211	2.7	211	94	1	970	17	28	33	20	1.95
35971579--35972028	127	3.6	127	86	6	538	16	28	34	20	1.95
35972245--35972322	24	3.2	24	87	0	111	6	38	35	19	1.77
35972345--35973014	43	15.8	41	73	8	254	16	31	33	18	1.93
35972472--35973028	85	6.5	84	75	8	385	15	30	34	18	1.93
35972345--35972609	127	2.1	126	83	4	327	15	32	33	18	1.92
35976322--35977140	63	13.0	63	100	0	1638	25	25	25	23	2.00
35981356--35981681	42	7.7	41	72	8	235	19	27	33	20	1.96
35981356--35981654	85	3.5	83	78	5	287	19	28	32	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35981982--35982489	85	6.0	84	80	5	511	16	32	33	17	1.93
35981982--35982489	43	11.9	43	74	8	380	16	32	33	17	1.93
35981982--35982674	170	4.0	170	75	8	633	15	32	34	17	1.92
35981995--35982697	43	16.2	42	72	11	323	15	31	34	18	1.92
35982122--35982481	128	2.8	125	77	9	368	15	32	33	18	1.93
35982447--35982558	56	2.0	56	100	0	224	10	33	35	19	1.87
35989608--35989673	33	2.0	33	93	0	114	19	31	25	22	1.98
35990118--35990452	42	7.9	42	72	9	234	20	26	32	20	1.97
35990668--35990780	24	4.7	24	84	0	91	10	36	31	21	1.87
35990681--35990780	48	2.1	48	86	0	137	10	38	32	20	1.85
35990794--35991468	85	7.9	85	78	4	493	16	30	34	18	1.93
35990791--35991468	43	15.9	43	75	5	475	16	30	34	18	1.93
35990797--35991493	128	5.4	128	72	8	344	16	29	34	19	1.93
35992022--35992108	43	2.0	43	93	0	147	13	31	24	31	1.94
35999014--35999297	42	6.7	42	80	5	295	18	26	33	21	1.96
35999027--35999297	85	3.2	86	76	8	261	18	26	33	21	1.97
35999027--35999297	127	2.1	127	82	4	323	18	26	33	21	1.97
35999515--35999587	24	3.0	23	80	4	74	9	36	31	21	1.86
35999611--35999773	42	3.9	42	73	1	137	16	30	33	19	1.94
35999601--35999764	85	1.9	85	87	0	238	16	30	33	19	1.94
36003448--36003724	42	6.5	42	75	11	226	19	27	33	20	1.96
36003490--36003713	84	2.6	85	81	6	310	18	27	35	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36003929--36003991	24	2.6	24	84	0	63	9	41	30	19	1.83
36003941--36003998	24	2.4	24	85	0	80	12	39	31	17	1.86
36004012--36004951	43	22.1	43	73	8	647	17	30	32	19	1.95
36004012--36004951	85	11.0	84	77	5	687	17	30	32	19	1.95
36004025--36004677	127	5.1	127	77	7	373	17	31	32	18	1.94
36004012--36004901	128	7.0	128	75	7	614	17	30	32	19	1.95
36004012--36004901	384	2.3	382	82	4	992	17	30	32	19	1.95
36005121--36005179	22	2.7	21	80	12	73	32	3	20	44	1.68
36010265--36010322	23	2.7	21	79	10	71	31	5	18	44	1.72
36010688--36011324	43	15.0	43	77	4	592	16	31	33	18	1.93
36010688--36011327	85	7.5	84	80	3	568	16	31	33	18	1.93
36010750--36011322	128	4.5	128	77	6	356	16	31	33	18	1.93
36010918--36011151	127	1.8	127	84	3	319	14	31	34	19	1.92
36010693--36011442	298	2.5	297	92	3	1196	16	30	34	18	1.93
36011351--36011467	43	2.7	42	88	4	162	13	27	39	19	1.89
36011593--36011719	66	1.9	67	95	1	229	12	31	40	15	1.85
36013926--36014438	256	2.0	256	100	0	1026	21	22	29	26	1.99
36015383--36015431	20	2.5	20	93	0	80	20	30	34	14	1.92
36018398--36021838	128	27.0	127	75	8	2311	16	31	33	18	1.93
36018391--36021891	85	41.2	84	80	7	2471	16	31	34	18	1.93
36018391--36021838	170	20.3	169	81	6	2815	16	31	33	18	1.93
36019826--36019924	52	1.9	52	89	0	153	19	29	33	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36019788--36019960	95	1.8	95	89	2	276	19	29	33	17	1.95
36019878--36021885	43	46.5	42	70	14	693	16	31	33	17	1.93
36019698--36020022	180	1.8	180	83	5	415	16	31	33	18	1.94
36021081--36021216	70	1.9	70	87	0	200	16	31	33	19	1.93
36021813--36021905	44	2.1	43	90	2	141	13	30	37	18	1.90
36030943--36030990	25	1.9	25	86	0	69	27	29	10	33	1.90
36034268--36034371	5	19.4	5	72	17	52	73	4	0	21	1.08
36034268--36034352	31	2.7	31	74	17	77	71	5	0	22	1.07
36034268--36034371	19	5.1	19	69	23	61	73	4	0	21	1.08
36034329--36034367	9	4.2	9	80	6	51	82	0	2	15	0.79
36035070--36035153	7	12.0	7	81	5	89	41	44	2	11	1.54
36035150--36035214	7	9.3	7	75	6	60	13	44	24	16	1.85
36035157--36035222	21	3.1	21	91	0	96	13	43	24	18	1.86
36035218--36035268	20	2.5	20	93	0	84	39	43	9	7	1.67
36035265--36035318	7	7.7	7	87	0	54	33	51	3	11	1.55
36035265--36035325	14	4.4	14	75	8	61	31	52	4	11	1.58
36035263--36035318	21	2.7	21	77	8	69	33	50	5	10	1.60
36035320--36035404	21	4.0	21	85	0	107	17	38	25	17	1.92
36035315--36035416	7	14.6	7	83	0	96	17	42	22	17	1.89
36035432--36035490	14	4.1	14	84	2	73	42	33	3	20	1.69
36035432--36035490	7	8.3	7	79	3	55	42	33	3	20	1.69
36035432--36035487	28	2.0	28	89	0	85	42	33	3	19	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36040483--36041096	43	14.4	43	89	3	789	19	24	32	23	1.98
36041018--36041117	42	2.4	42	89	0	146	21	28	33	18	1.96
36041409--36042169	43	17.6	43	74	9	521	17	30	33	18	1.94
36041606--36041713	55	1.9	56	85	5	148	17	33	31	17	1.94
36041567--36041756	98	1.9	98	90	0	299	16	32	33	17	1.93
36041689--36042169	85	5.7	84	79	8	454	17	29	33	19	1.95
36041660--36042356	128	5.6	126	73	14	565	17	29	33	19	1.95
36042150--36042190	21	2.0	21	95	0	73	7	26	39	26	1.82
36042169--36042352	42	4.3	40	73	10	143	15	32	32	20	1.94
36042022--36042309	148	1.9	148	94	0	504	14	28	34	22	1.93
36042169--36042352	85	2.2	85	85	3	246	15	32	32	20	1.94
36042572--36042697	42	3.0	43	76	6	148	16	30	34	17	1.92
36043052--36043457	127	3.2	127	99	0	794	13	32	34	19	1.90
36042825--36043548	85	8.5	83	74	7	451	15	31	33	19	1.92
36043052--36043568	254	2.0	256	89	2	781	13	31	35	19	1.90
36042825--36043548	43	17.0	42	74	6	485	15	31	33	19	1.92
36044897--36045015	43	2.8	42	79	3	132	31	24	18	26	1.98
36046923--36046949	14	1.9	14	100	0	54	59	7	14	18	1.58
36047627--36047662	18	2.1	18	89	5	56	61	2	30	5	1.33
36056999--36057044	18	2.6	18	85	0	65	67	2	0	30	1.03
36057173--36057233	17	3.4	17	72	12	59	32	1	13	52	1.50
36057163--36057242	37	2.2	37	93	0	133	33	2	13	50	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36057188--36057242	17	3.0	18	70	15	58	36	1	14	47	1.55
36066237--36066265	8	3.6	8	100	0	58	10	0	0	89	0.48
36066284--36066345	10	6.4	10	75	20	60	29	1	0	69	0.98
36066252--36066395	40	3.5	41	84	10	179	35	2	0	61	1.16
36066313--36066370	29	2.0	29	83	6	73	36	3	0	60	1.14
36066259--36066377	11	11.5	11	69	22	64	36	3	0	60	1.13
36068093--36068294	43	4.8	42	84	8	225	30	27	15	26	1.96
36068094--36068294	84	2.4	84	85	7	248	30	27	15	26	1.96
36071664--36071706	21	2.0	22	86	13	63	44	0	13	41	1.44
36071664--36071707	20	2.1	21	84	12	56	45	0	13	40	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185