genome.fa.s5.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  51  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15537803--15537835	12	2.8	12	90	9	50	6	21	51	21	1.69
15540846--15541176	98	3.4	98	100	0	662	29	16	24	28	1.97
15543873--15544050	61	3.0	60	69	12	175	43	1	5	48	1.36
15544292--15544352	16	3.8	16	84	0	77	24	32	3	39	1.72
15546291--15546333	21	2.0	21	95	0	77	53	13	16	16	1.73
15553983--15554014	13	2.5	13	100	0	64	37	6	15	40	1.73
15554016--15554065	20	2.5	20	81	15	68	56	4	24	16	1.57
15564556--15564612	23	2.5	23	88	0	78	15	15	17	50	1.78
15578281--15578384	49	2.1	49	89	0	154	49	10	8	31	1.68
15581653--15581769	44	2.6	45	71	18	127	47	10	12	29	1.74
15606828--15606865	13	2.8	14	80	19	53	65	0	5	28	1.14
15607457--15607500	17	2.6	17	85	3	63	47	0	11	40	1.39
15607429--15607527	33	3.2	33	68	23	79	51	2	12	34	1.51
15607987--15608055	19	3.5	19	88	7	111	34	11	11	42	1.78
15608497--15608613	44	2.7	44	82	2	146	28	22	18	30	1.97
15608590--15608694	44	2.5	43	82	4	124	30	20	20	28	1.98
15608582--15608694	41	2.7	41	81	4	127	28	22	20	29	1.98
15608582--15608725	44	3.3	44	79	4	116	27	22	20	29	1.98
15608905--15609229	88	3.7	89	80	6	315	23	24	24	27	2.00
15609002--15609230	44	5.2	45	68	13	134	21	25	24	28	1.99
15615042--15615079	13	2.8	14	80	19	53	65	0	5	28	1.14
15615297--15615340	17	2.6	17	85	3	63	47	0	11	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15615468--15615509	3	14.0	3	94	0	75	66	2	0	30	1.04
15615502--15615550	21	2.3	21	86	6	64	71	2	2	24	1.07
15615839--15615908	19	3.5	20	92	7	117	35	14	11	38	1.82
15625520--15625564	18	2.5	18	82	7	56	40	17	4	37	1.70
15628766--15628841	33	2.3	33	88	6	111	23	26	26	23	2.00
15635119--15635170	27	1.9	27	92	0	86	42	17	17	23	1.89
15635122--15635183	27	2.3	27	82	0	79	46	20	12	19	1.83
15640770--15640840	36	2.0	36	97	0	133	35	16	14	33	1.89
15647242--15647352	44	2.5	44	83	2	134	29	18	21	30	1.97
15647546--15647645	51	2.0	51	85	0	137	26	27	18	29	1.98
15647789--15647922	43	3.0	45	69	4	119	28	27	17	26	1.98
15647789--15647961	88	2.0	88	92	0	292	28	27	17	26	1.98
15647814--15647953	44	3.2	44	73	4	156	29	27	18	25	1.98
15667659--15667776	58	2.0	58	98	0	227	37	21	10	31	1.87
15683478--15683680	40	5.1	39	85	4	271	35	19	27	17	1.94
15683479--15683624	20	7.3	20	62	9	64	35	18	29	16	1.93
15683576--15683644	20	3.5	20	71	0	57	34	20	31	13	1.91
15683460--15683687	80	2.8	80	84	2	235	36	18	27	17	1.94
15688782--15688820	22	1.9	21	85	15	55	23	0	7	69	1.14
15691512--15691631	62	1.9	62	100	0	240	40	16	5	37	1.73
15694151--15694412	59	4.4	59	94	0	436	52	8	4	34	1.51
15696351--15696376	11	2.4	11	100	0	52	73	0	7	19	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15696324--15696369	20	2.3	20	75	17	51	67	0	2	30	1.03
15697788--15697836	26	1.9	25	83	4	62	44	2	0	53	1.12
15702638--15702670	14	2.3	15	89	5	50	3	18	0	78	0.87
15703216--15703242	6	4.5	6	100	0	54	14	0	48	37	1.45
15704328--15704387	29	2.1	27	81	6	66	30	11	15	43	1.82
15704655--15705292	127	5.1	127	95	0	1050	29	15	21	33	1.95
15708497--15708554	7	8.4	7	94	1	73	22	0	41	36	1.54
15708497--15708554	14	4.2	14	91	2	82	22	0	41	36	1.54
15708497--15708554	21	2.8	21	89	2	91	22	0	41	36	1.54
15708519--15708561	21	2.0	21	81	0	50	32	0	34	32	1.58
15708540--15709307	28	27.2	29	84	6	827	29	1	24	43	1.65
15708540--15709307	29	27.2	28	82	11	792	29	1	24	43	1.65
15708925--15709032	23	4.3	23	74	16	90	29	2	23	44	1.67
15708542--15709304	79	9.0	80	86	9	675	29	1	24	43	1.65
15708723--15709319	79	7.3	79	88	7	682	30	2	23	44	1.65
15709277--15709337	19	3.0	19	83	9	59	31	3	18	47	1.64
15711472--15711505	15	2.3	15	90	5	52	67	5	2	23	1.26
15711702--15711743	22	1.9	22	90	0	66	33	0	33	33	1.58
15711745--15711821	22	3.6	21	84	6	93	37	1	27	33	1.65
15721915--15722012	41	2.4	41	89	0	160	24	26	21	27	1.99
15722671--15722721	12	4.2	12	76	14	50	43	7	3	45	1.51
15725282--15725306	4	6.2	4	100	0	50	52	24	0	24	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15729533--15729940	84	4.9	84	98	0	762	36	25	16	21	1.94
15732587--15732646	30	2.0	31	86	3	86	20	36	0	43	1.52
15732905--15732951	17	2.8	17	79	20	62	36	2	6	55	1.37
15737154--15737194	16	2.5	16	88	11	57	41	2	2	53	1.27
15740313--15740353	16	2.5	16	88	11	57	41	2	2	53	1.27
15746195--15746236	21	2.1	19	86	8	57	16	4	9	69	1.33
15750354--15750396	22	2.0	22	100	0	86	20	9	27	41	1.83
15750427--15750525	39	2.5	39	80	3	101	30	3	20	46	1.65
15754917--15754949	11	2.9	12	86	13	52	6	18	0	75	1.00
15754914--15754956	12	3.9	11	82	17	54	6	16	0	76	0.99
15754953--15755008	28	2.0	29	89	3	87	21	5	8	64	1.42
15760564--15760656	32	2.9	32	77	0	96	37	22	20	19	1.94
15760831--15760912	24	3.4	24	79	3	85	48	20	7	23	1.74
15760848--15760941	24	3.9	24	77	5	84	44	23	8	23	1.80
15760978--15761181	27	7.6	27	80	3	133	23	19	20	37	1.94
15760978--15761181	54	3.8	54	82	2	241	23	19	20	37	1.94
15760977--15761181	107	1.9	108	89	3	324	22	19	20	37	1.94
15760958--15761181	80	2.8	80	80	5	247	23	20	19	36	1.95
15761036--15761199	80	2.0	80	82	6	199	24	18	20	36	1.95
15762240--15762274	17	2.0	17	88	5	52	14	2	5	77	1.07
15763081--15763134	24	2.2	24	86	0	81	31	5	3	59	1.38
15767431--15767523	45	2.1	45	87	4	134	34	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15771763--15771800	20	1.9	19	89	5	58	34	5	0	60	1.19
15782330--15782595	142	1.9	143	87	3	392	28	22	21	27	1.99
15787359--15787635	141	2.0	140	82	7	337	29	21	19	29	1.98
15794912--15794955	22	2.0	22	100	0	88	50	18	13	18	1.79
15810668--15810694	13	2.1	13	100	0	54	22	37	33	7	1.82
15819255--15819310	19	2.8	20	81	2	60	26	1	8	62	1.35
15819284--15819334	22	2.3	21	78	15	50	37	3	5	52	1.44
15819423--15819452	14	2.1	15	93	6	53	26	3	0	70	1.03
15819369--15819502	9	14.9	9	68	16	55	29	2	3	64	1.26
15819452--15819488	19	1.9	19	94	0	65	21	5	5	67	1.31
15823910--15824100	50	3.8	50	74	12	167	26	16	25	30	1.97
15832637--15832678	13	3.2	13	78	15	50	42	21	2	33	1.66
15833968--15834149	76	2.4	76	100	0	364	47	6	9	36	1.62
15842471--15842533	31	2.0	31	93	6	110	38	15	26	19	1.92
15845201--15845233	17	1.9	17	93	0	57	21	12	9	57	1.62
15848269--15848383	61	1.9	61	85	0	158	48	6	4	40	1.48
15848328--15848421	37	2.5	36	83	6	107	52	3	5	39	1.40
15867463--15867523	30	2.0	30	96	0	113	49	16	11	22	1.78
15867432--15867672	67	3.5	67	80	10	299	45	16	9	29	1.78
15875444--15875522	40	2.0	40	100	0	158	30	2	18	48	1.62
15878665--15878758	45	2.1	45	91	0	152	31	24	18	25	1.97
15878760--15878950	51	3.8	50	81	5	224	32	27	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15878762--15878946	101	1.8	101	88	3	282	32	27	16	24	1.96
15895289--15895465	27	6.6	27	85	3	232	32	16	14	36	1.88
15898518--15898596	37	2.1	37	90	0	122	25	31	18	24	1.98
15898717--15899217	47	10.5	47	94	1	795	28	31	9	30	1.89
15900904--15900928	13	1.9	13	100	0	50	32	16	20	32	1.94
15903478--15903518	21	2.0	21	85	0	55	68	2	9	19	1.29
15905082--15905226	60	2.4	59	80	7	175	37	4	15	42	1.69
15905082--15905214	61	2.2	62	85	7	177	36	4	15	42	1.68
15911185--15911290	27	3.9	27	89	7	153	44	20	15	19	1.87
15919945--15920043	26	3.8	26	75	1	83	33	17	9	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185