genome.fa.s5.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  161  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48325980--48326266	124	2.3	125	91	0	459	29	19	18	32	1.96
48326447--48326487	21	2.0	21	90	0	64	48	34	0	17	1.47
48331449--48331480	3	10.7	3	100	0	64	0	31	0	68	0.90
48348164--48348202	15	2.5	16	88	12	55	51	0	0	48	1.00
48349514--48349553	9	4.4	9	84	12	55	27	10	17	45	1.80
48352712--48352745	16	2.1	16	88	0	50	23	8	5	61	1.47
48352913--48352949	17	2.1	18	90	5	58	43	5	5	45	1.49
48358846--48360286	100	14.4	100	88	0	1968	33	22	20	23	1.97
48363103--48363589	50	9.7	50	73	5	410	34	21	19	24	1.97
48363076--48363607	100	5.3	100	87	0	776	34	21	19	24	1.97
48364091--48364808	50	14.4	50	73	4	552	33	22	20	23	1.97
48364085--48364808	100	7.2	100	88	1	959	33	22	20	23	1.97
48366458--48366494	17	2.1	18	90	5	58	43	5	5	45	1.49
48369165--48369314	26	6.2	23	78	13	106	60	4	6	29	1.41
48369188--48369559	26	14.1	26	75	10	292	60	3	6	29	1.40
48369263--48369311	22	2.3	23	86	10	68	63	4	2	30	1.24
48369211--48369447	75	3.1	74	74	15	192	62	4	4	29	1.33
48369285--48369439	57	2.8	56	80	4	172	63	3	4	29	1.30
48369188--48369559	110	3.5	104	76	13	307	60	3	6	29	1.40
48369496--48369563	29	2.3	29	78	14	77	67	1	5	25	1.21
48370353--48370387	18	2.0	17	88	5	52	80	8	11	0	0.92
48377575--48377638	27	2.3	27	81	7	76	65	3	0	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48378221--48378309	29	3.0	30	77	4	92	51	1	1	46	1.15
48384261--48384288	8	3.5	8	100	0	56	89	0	10	0	0.49
48396893--48397081	85	2.2	84	83	3	227	41	17	7	33	1.77
48397333--48397373	19	2.2	19	86	0	55	43	2	0	53	1.13
48397416--48397441	11	2.4	11	100	0	52	15	0	7	76	0.99
48400995--48401058	17	3.6	17	74	15	67	46	12	12	28	1.78
48401013--48401066	17	3.1	17	70	19	56	46	14	12	25	1.81
48400998--48401066	36	1.9	36	96	0	129	46	13	13	27	1.79
48403686--48403749	17	3.6	17	74	15	67	46	12	12	28	1.78
48403704--48403757	17	3.1	17	70	19	56	46	14	12	25	1.81
48403689--48403757	36	1.9	36	96	0	129	46	13	13	27	1.79
48404097--48404134	3	12.3	3	94	5	67	65	31	0	2	1.06
48406848--48406885	19	2.0	20	84	5	51	47	2	0	50	1.15
48415461--48415498	17	2.3	16	95	4	67	65	18	0	15	1.27
48416870--48416914	11	4.3	11	84	15	60	55	0	0	44	0.99
48416857--48416916	32	1.9	31	86	10	86	51	1	0	46	1.10
48416886--48416963	29	2.7	28	81	13	95	60	0	1	38	1.05
48416886--48416963	30	2.7	28	84	9	104	60	0	1	38	1.05
48416857--48416963	30	3.7	30	80	12	93	57	0	0	40	1.11
48417376--48417446	19	3.6	18	72	26	54	54	4	0	40	1.20
48417523--48417556	17	2.0	17	88	0	50	26	0	5	67	1.13
48417886--48417930	7	6.6	7	87	2	65	37	2	2	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48419617--48419651	16	2.1	17	89	5	54	22	2	2	71	1.13
48420069--48420124	28	2.0	28	100	0	112	50	7	7	35	1.57
48420476--48420516	20	2.0	20	85	0	55	53	0	19	26	1.45
48421327--48421448	52	2.4	52	84	1	156	36	18	15	29	1.91
48423648--48424005	179	2.0	179	100	0	716	31	22	14	31	1.94
48425356--48425388	17	1.9	17	93	0	57	51	12	18	18	1.76
48431398--48431449	15	3.2	15	73	19	50	44	0	1	53	1.11
48431482--48431517	16	2.2	17	90	9	58	36	0	2	61	1.11
48431477--48431523	13	3.3	14	80	14	51	46	0	2	51	1.13
48434064--48434178	44	2.6	44	85	2	149	35	13	22	27	1.92
48434064--48434197	46	3.0	45	82	4	153	35	14	23	26	1.93
48440075--48440189	44	2.6	44	85	2	149	35	13	22	27	1.92
48440075--48440208	46	3.0	45	82	4	153	35	14	23	26	1.93
48442505--48442563	31	1.9	31	92	0	100	22	22	3	52	1.61
48442647--48442781	25	5.6	25	81	10	142	39	19	23	17	1.92
48445012--48445051	21	1.9	21	89	0	62	30	15	2	52	1.55
48446497--48446592	23	4.2	23	81	5	113	31	25	19	23	1.98
48446504--48446594	46	2.0	46	88	0	137	30	24	21	23	1.99
48447782--48447817	18	2.0	18	100	0	72	38	11	5	44	1.63
48449546--48449619	19	3.9	18	77	8	76	31	21	24	22	1.99
48449545--48449619	38	2.0	38	94	0	132	30	21	24	24	1.99
48449695--48449725	6	5.2	6	92	0	53	35	29	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48449689--48449725	12	3.1	12	88	0	56	40	27	0	32	1.57
48451237--48451294	22	2.6	22	81	7	64	41	17	5	36	1.72
48456270--48456425	46	3.4	45	76	11	147	55	1	5	36	1.35
48456272--48456320	25	2.0	24	84	7	64	59	2	2	36	1.21
48456296--48456429	22	5.9	23	68	16	84	55	1	5	36	1.33
48456272--48456429	23	6.9	23	72	15	96	56	1	5	36	1.32
48457995--48458110	50	2.3	50	95	4	207	47	9	8	34	1.67
48459195--48459237	22	2.0	22	100	0	86	51	9	16	23	1.73
48463089--48463191	42	2.5	42	82	3	118	42	20	21	15	1.88
48463172--48463236	20	3.2	20	77	2	58	44	15	20	20	1.86
48468923--48469041	21	5.7	21	74	0	112	17	25	15	41	1.89
48468917--48469057	42	3.4	42	82	0	156	19	25	15	39	1.91
48468905--48469024	63	1.9	62	81	1	141	20	24	15	40	1.91
48471833--48471869	9	4.1	9	92	0	65	45	13	10	29	1.77
48473281--48473349	34	2.0	35	94	2	122	24	23	18	33	1.97
48474875--48474932	25	2.2	26	82	14	75	29	25	27	17	1.97
48474889--48475113	24	9.2	25	72	10	135	34	20	26	19	1.96
48479602--48479628	7	3.9	7	100	0	54	40	14	0	44	1.46
48479741--48479783	6	6.8	6	81	7	50	44	16	20	18	1.87
48479767--48479912	45	3.2	44	85	3	202	41	21	17	19	1.90
48480859--48480885	9	3.0	9	100	0	54	55	0	0	44	0.99
48483434--48483472	19	2.1	19	85	9	53	43	0	12	43	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48483583--48483691	37	3.0	37	90	2	177	35	16	22	24	1.95
48487428--48487474	23	2.0	23	95	0	85	23	8	27	40	1.83
48487889--48487913	12	2.1	12	100	0	50	44	16	32	8	1.76
48489468--48489568	50	2.0	50	98	0	193	23	14	23	37	1.92
48494042--48494066	8	3.1	8	100	0	50	12	52	12	24	1.72
48494545--48494579	11	3.2	11	88	11	54	0	54	0	45	0.99
48498521--48498554	15	2.2	16	94	5	61	17	26	17	38	1.92
48498590--48498710	60	2.0	60	98	0	233	27	25	17	29	1.97
48504706--48504738	15	2.2	15	89	10	50	27	0	0	72	0.85
48504742--48504766	12	2.1	12	100	0	50	48	0	0	52	1.00
48507236--48507349	41	2.8	41	85	1	149	8	63	3	24	1.39
48511360--48511420	32	1.9	31	83	9	79	31	0	6	62	1.21
48511302--48511423	42	2.9	41	77	13	115	36	0	4	59	1.19
48517437--48517478	20	2.1	20	86	0	57	47	2	4	45	1.36
48518596--48518635	21	1.9	21	84	0	53	37	32	2	27	1.70
48518492--48519938	714	2.0	719	94	2	2519	32	22	10	35	1.87
48533458--48533584	62	2.0	63	96	1	238	35	14	17	33	1.90
48536744--48536777	18	1.9	18	88	5	52	29	0	5	64	1.17
48537628--48537668	21	2.0	21	90	0	64	29	31	17	21	1.96
48537703--48537770	31	2.3	30	85	10	86	22	8	20	48	1.77
48537532--48538191	355	1.9	348	90	5	1058	24	17	17	40	1.91
48538846--48538908	30	2.1	30	96	0	117	57	14	1	26	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48539555--48539610	23	2.4	22	80	11	67	32	0	7	60	1.24
48540760--48540787	6	4.7	6	100	0	56	14	32	17	35	1.90
48547546--48547605	29	2.1	28	87	6	86	40	45	3	11	1.57
48548770--48548803	16	2.1	17	94	5	61	32	0	0	67	0.91
48548948--48548995	14	3.4	14	82	2	60	33	4	6	56	1.44
48549951--48550002	24	2.2	24	89	0	77	50	9	3	36	1.54
48558180--48558236	30	1.9	30	85	7	80	22	49	3	24	1.66
48571678--48571748	32	2.2	32	85	2	99	25	8	11	54	1.63
48572234--48572288	26	2.2	24	83	6	65	36	5	1	56	1.33
48573470--48573525	29	1.9	29	85	0	76	48	12	12	26	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185