genome.fa.s5.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  97  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30845017--30845055	19	2.1	19	90	0	60	28	23	0	48	1.51
30845156--30845189	10	3.3	11	88	12	54	20	8	0	70	1.13
30845218--30845260	21	2.0	21	82	8	52	32	6	0	60	1.23
30845316--30845348	11	3.1	11	86	4	50	21	0	6	72	1.05
30845456--30845532	5	14.6	5	89	8	109	18	22	0	59	1.37
30845456--30845532	16	4.9	15	87	9	109	18	22	0	59	1.37
30845459--30845532	21	3.5	21	90	5	105	18	22	0	58	1.40
30844394--30845581	624	1.9	632	82	8	1516	27	14	5	52	1.63
30845548--30845686	27	5.6	26	71	21	102	22	13	1	62	1.39
30845519--30845637	48	2.4	50	87	6	172	22	14	0	62	1.37
30845635--30845692	21	2.8	20	79	10	62	18	13	1	65	1.35
30845676--30845732	15	3.6	15	77	11	60	24	10	1	63	1.36
30848693--30848718	12	2.2	12	100	0	52	76	15	7	0	0.99
30848960--30849076	51	2.3	50	82	8	150	23	25	17	33	1.96
30849926--30849965	17	2.3	18	82	8	55	30	0	12	57	1.36
30850288--30850378	45	2.2	43	81	13	102	64	3	3	28	1.25
30852102--30852171	34	2.1	34	97	0	131	22	21	25	30	1.99
30855930--30856013	26	3.3	26	81	5	100	16	26	22	34	1.95
30863539--30863588	13	3.8	13	78	0	64	38	18	6	38	1.75
30863539--30863588	26	1.9	26	87	0	73	38	18	6	38	1.75
30865390--30865493	54	1.9	54	94	0	181	21	25	12	40	1.88
30865177--30865705	263	2.0	263	96	0	986	31	21	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30873940--30874002	26	2.4	27	97	2	119	41	11	0	47	1.39
30874234--30874272	19	2.0	21	85	10	55	17	0	12	69	1.19
30884219--30884291	33	2.2	33	83	7	87	0	32	0	67	0.91
30884239--30884304	21	3.1	21	72	16	64	0	30	0	69	0.88
30884243--30884330	36	2.5	35	78	15	99	0	29	0	70	0.88
30884241--30884321	41	2.0	42	87	7	121	0	32	0	67	0.91
30886212--30886264	26	2.0	26	88	7	79	0	37	0	62	0.96
30886317--30886367	27	1.9	26	88	4	75	15	37	21	25	1.93
30886423--30886483	26	2.2	28	94	5	108	50	0	8	40	1.32
30890544--30890869	180	1.8	177	87	3	483	28	27	12	31	1.93
30890829--30890908	39	2.1	39	92	0	133	33	32	6	27	1.82
30894155--30894179	7	3.6	7	100	0	50	16	0	52	32	1.44
30894199--30894227	8	3.8	8	90	9	51	24	0	37	37	1.56
30912085--30912201	30	3.9	29	77	11	94	44	2	22	30	1.66
30912100--30912201	30	3.4	30	84	2	134	44	2	22	30	1.68
30912072--30912201	60	2.2	59	80	4	154	43	2	20	33	1.65
30915876--30915917	20	2.1	20	86	0	57	47	0	7	45	1.30
30918769--30918814	24	2.0	24	86	4	67	54	6	4	34	1.46
30920599--30920665	23	2.9	23	71	8	64	17	16	25	40	1.90
30924869--30925022	28	5.5	28	96	0	265	25	12	28	33	1.92
30924844--30925022	56	3.2	55	91	1	268	25	12	28	33	1.92
30962414--30962650	50	4.8	49	79	10	241	27	22	28	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30962840--30962879	20	2.0	20	90	9	64	55	7	22	15	1.65
30967188--30967216	6	4.8	6	100	0	58	51	0	31	17	1.45
30972323--30972700	125	3.0	125	91	0	578	30	15	22	31	1.95
30975874--30977423	23	71.3	21	72	19	431	27	0	25	46	1.56
30975929--30977421	64	22.9	64	88	6	1942	27	0	25	46	1.54
30975922--30977423	45	34.5	45	76	10	1028	27	0	25	46	1.54
30977588--30977635	21	2.3	21	78	7	53	2	27	41	29	1.67
30977896--30977930	18	1.9	18	88	0	52	42	8	28	20	1.81
30978578--30978610	7	4.7	7	100	0	66	57	15	0	27	1.38
30978780--30978817	20	1.9	20	84	10	51	55	7	2	34	1.43
30979709--30979748	21	1.9	21	89	0	62	65	2	0	32	1.06
30979803--30979857	11	4.9	11	77	16	60	41	0	30	27	1.56
30979803--30979856	23	2.4	23	84	9	67	40	0	31	27	1.57
30983922--30984294	87	4.3	86	83	4	428	32	12	28	26	1.93
30983922--30984281	29	12.4	29	86	2	377	32	12	28	26	1.93
30995978--30996209	50	4.5	50	80	4	216	25	26	20	28	1.99
30998469--30998504	15	2.3	16	90	4	56	27	16	0	55	1.42
30998724--30998859	50	2.7	49	85	4	182	30	27	16	25	1.96
31000175--31000200	13	2.0	13	100	0	52	38	23	7	30	1.83
31001996--31002091	49	1.9	50	89	2	149	33	28	14	23	1.94
31004257--31004292	16	2.3	15	90	4	54	25	16	0	58	1.38
31004511--31004708	51	4.0	51	73	12	185	29	28	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31004514--31004700	98	1.9	99	84	6	234	30	26	17	25	1.97
31009047--31009098	4	13.0	4	100	0	104	50	25	0	25	1.50
31011584--31011625	21	2.0	21	86	4	59	54	2	0	42	1.13
31011897--31011923	12	2.2	12	100	0	54	74	0	0	25	0.83
31013531--31013560	15	2.0	15	100	0	60	46	13	0	40	1.43
31015420--31015764	132	2.6	132	87	0	501	28	24	17	29	1.97
31015683--31016283	128	4.7	128	89	1	909	25	23	18	31	1.97
31017577--31017623	7	6.6	7	78	11	51	12	14	2	70	1.26
31017577--31017612	15	2.4	15	90	0	54	13	13	0	72	1.13
31018573--31018607	12	3.0	12	87	4	54	11	0	14	74	1.08
31024728--31024760	17	2.0	17	94	5	59	51	0	0	48	1.00
31034102--31034215	56	2.0	57	89	1	176	50	14	10	24	1.75
31036902--31036926	13	1.9	13	100	0	50	80	4	16	0	0.87
31045204--31045391	51	3.7	51	84	3	211	25	17	28	29	1.97
31045204--31045391	101	1.9	102	86	3	272	25	17	28	29	1.97
31046835--31047151	79	4.0	79	99	0	625	31	12	22	33	1.91
31049419--31049456	19	2.0	19	94	0	67	47	15	28	7	1.74
31052695--31052887	51	3.8	49	82	2	215	25	17	27	29	1.98
31058470--31058530	17	3.5	17	78	17	54	32	0	26	40	1.56
31058931--31058962	13	2.3	15	89	10	50	43	6	3	46	1.44
31061672--31061732	31	2.0	31	96	0	113	19	14	19	45	1.85
31066663--31066821	67	2.4	67	91	0	255	23	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31068727--31068966	50	4.7	50	78	4	187	23	27	20	28	1.99
31076252--31076449	50	3.8	51	83	5	220	21	29	21	27	1.99
31079717--31079762	11	4.3	11	76	13	51	76	2	4	17	1.06
31079965--31080033	35	2.0	35	94	0	120	24	14	40	20	1.90
31080428--31081081	127	5.2	126	91	1	1013	23	22	22	31	1.98
31080427--31081084	84	7.8	84	70	13	300	23	22	22	31	1.98
31080481--31081084	40	14.3	41	71	14	385	23	22	22	30	1.99
31081086--31081232	50	2.9	51	73	5	138	27	21	19	32	1.97
31081680--31081875	108	1.8	108	87	2	295	47	10	16	25	1.77
31083469--31083514	23	2.0	23	91	0	74	28	10	32	28	1.91
31083666--31083715	25	2.0	25	92	0	82	16	28	26	30	1.96
31086422--31086461	16	2.6	14	82	17	53	77	2	2	17	0.99
31094407--31094612	103	2.0	103	89	3	317	33	19	7	38	1.80
31100753--31100977	40	5.6	40	99	0	441	29	20	27	21	1.98
31115070--31115253	40	4.4	40	74	16	176	30	20	20	28	1.97
31115612--31115710	49	2.0	49	94	0	171	47	20	3	29	1.65
31115727--31115883	76	2.1	76	100	0	314	43	14	1	41	1.53
31116948--31116986	20	2.0	20	100	0	78	25	30	15	28	1.96
31123193--31123282	40	2.2	40	94	0	153	28	24	20	26	1.99
31126811--31127055	29	8.4	29	81	8	216	22	28	11	37	1.89
31126811--31127094	58	4.9	58	73	10	186	23	27	11	37	1.90
31126811--31127055	87	2.8	86	77	9	253	22	28	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31126811--31127091	116	2.4	116	83	5	327	23	27	11	37	1.90
31136264--31136391	45	2.8	45	91	0	202	33	19	22	24	1.97
31136264--31136430	90	1.9	90	82	2	210	37	18	21	22	1.94
31142564--31142615	22	2.4	22	76	0	59	40	1	3	53	1.30
31147319--31147503	96	1.9	96	88	0	280	31	16	15	36	1.90
31150653--31150725	30	2.5	30	95	2	130	50	4	6	38	1.48
31161747--31161780	16	2.2	15	89	5	50	17	2	2	76	1.04
31173425--31173498	37	2.0	37	97	0	139	28	8	35	28	1.86
31178452--31178480	12	2.3	13	94	5	51	65	6	6	20	1.40
31183136--31183313	96	1.9	96	85	0	248	30	18	23	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185