genome.fa.s5.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  134  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41135969--41136065	28	3.5	27	75	14	90	31	3	2	62	1.22
41135921--41136056	19	7.2	19	71	12	84	30	4	1	63	1.23
41135969--41136076	56	1.9	58	84	7	150	31	4	1	62	1.26
41136113--41136158	19	2.4	19	85	3	56	32	2	2	63	1.19
41139429--41139453	13	1.9	13	100	0	50	24	8	0	68	1.16
41139529--41139563	16	2.2	16	89	0	52	22	8	2	65	1.34
41141876--41141937	31	2.0	31	100	0	124	29	6	25	38	1.81
41153776--41153895	61	2.0	61	95	1	215	33	10	8	48	1.67
41158573--41158728	82	1.9	82	93	0	267	17	12	20	48	1.80
41162459--41162506	22	2.2	21	80	20	55	41	0	0	58	0.98
41163718--41163759	19	2.2	19	91	8	68	30	2	9	57	1.44
41169402--41169448	14	3.5	14	74	8	53	48	4	0	46	1.21
41169633--41169679	22	2.1	22	84	7	60	46	0	8	44	1.33
41172353--41172378	6	4.3	6	100	0	52	46	19	0	34	1.50
41176726--41176770	23	2.0	23	90	0	72	40	17	8	33	1.81
41179272--41179303	16	2.0	16	100	0	64	25	31	25	18	1.98
41183325--41183408	43	2.0	43	83	9	109	19	19	29	32	1.96
41184171--41184208	16	2.4	16	86	4	51	36	0	15	47	1.46
41193036--41193166	64	2.0	64	100	0	262	29	12	21	35	1.91
41197521--41197610	25	3.6	25	72	11	69	17	24	18	38	1.92
41197570--41197759	25	7.7	25	72	10	117	16	26	21	35	1.95
41197752--41197806	25	2.2	25	83	0	65	25	20	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41198650--41198704	23	2.4	23	79	14	60	58	3	0	38	1.16
41200472--41200531	28	2.1	28	82	11	70	46	18	15	20	1.84
41206589--41206641	25	2.1	25	96	0	97	32	24	0	43	1.55
41211103--41211146	21	2.1	22	83	8	56	27	11	9	52	1.67
41213881--41213920	19	2.2	19	86	13	57	67	0	5	27	1.11
41232559--41232589	15	2.0	16	93	6	55	25	0	25	48	1.52
41232561--41232689	61	2.1	61	81	4	143	31	2	22	44	1.65
41232761--41232828	16	4.2	16	94	0	109	27	0	35	36	1.58
41232809--41232903	45	2.1	44	86	1	127	34	5	26	33	1.79
41233065--41233099	18	2.0	17	88	5	52	54	0	0	45	0.99
41233023--41233095	27	2.7	27	76	8	76	52	2	0	45	1.15
41233212--41233246	18	2.0	17	88	5	52	54	0	0	45	0.99
41232984--41233258	147	1.9	149	95	1	500	46	3	2	47	1.35
41232990--41233297	147	2.1	145	85	4	357	46	4	2	46	1.38
41233337--41233371	18	2.0	17	88	5	52	60	0	0	40	0.97
41233195--41233491	119	2.4	123	87	5	417	50	5	2	40	1.40
41233507--41233714	91	2.3	91	88	4	285	47	3	3	45	1.37
41233574--41233721	44	3.2	47	68	18	128	47	5	3	43	1.42
41233488--41233674	44	4.1	43	68	17	103	49	3	2	44	1.32
41236867--41236901	18	1.9	18	88	11	54	37	0	5	57	1.23
41237168--41237208	21	2.0	21	85	0	55	36	7	0	56	1.27
41240822--41240850	3	9.7	3	100	0	58	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41241157--41241203	22	2.1	22	96	0	85	25	34	0	40	1.56
41241157--41241255	52	1.9	52	93	0	171	29	31	0	39	1.57
41241208--41241258	22	2.3	22	86	6	68	31	31	0	37	1.58
41253526--41253727	108	1.9	107	86	4	289	27	25	17	30	1.97
41253743--41253946	44	4.6	44	91	0	318	29	24	14	31	1.94
41253715--41253946	88	2.6	88	88	0	320	27	24	15	32	1.95
41253925--41254311	132	2.9	129	89	3	560	27	23	17	31	1.97
41254003--41254313	44	7.1	44	65	5	126	27	23	18	30	1.97
41254207--41254408	108	1.9	107	86	4	289	27	25	17	30	1.97
41254423--41254791	44	8.3	45	75	4	320	29	23	17	30	1.97
41254423--41254804	88	4.3	89	90	1	554	29	22	17	30	1.97
41255904--41255971	7	9.7	7	84	12	95	13	17	0	69	1.20
41256642--41256757	61	1.9	61	90	0	187	24	22	15	37	1.93
41261111--41261152	21	1.9	21	90	9	66	57	0	2	40	1.12
41261111--41261150	5	7.4	5	88	8	53	57	0	2	40	1.12
41263442--41263470	9	3.2	9	100	0	58	79	0	0	20	0.74
41266435--41266532	43	2.2	44	87	1	144	18	15	35	30	1.92
41266537--41266630	43	2.2	43	86	3	127	29	29	19	21	1.97
41266994--41267049	21	2.7	21	82	0	58	7	42	14	35	1.73
41267015--41267059	21	2.1	21	87	0	63	4	42	15	37	1.67
41267029--41267195	66	2.5	66	83	3	203	13	27	18	40	1.88
41270893--41271022	9	15.8	9	68	16	77	33	5	17	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41270898--41271017	16	7.9	16	66	22	62	33	5	17	44	1.71
41270977--41271035	25	2.3	26	88	5	84	35	1	16	45	1.58
41273052--41273095	12	3.8	12	84	3	54	13	6	2	77	1.07
41273275--41273402	57	2.2	57	95	2	231	35	40	3	20	1.68
41273756--41273785	7	4.3	7	100	0	60	16	56	0	26	1.40
41273754--41273845	7	12.4	7	76	11	58	29	46	1	22	1.59
41274546--41274584	15	2.6	15	79	0	51	35	38	0	25	1.56
41275112--41275332	41	5.4	41	76	5	196	37	21	23	17	1.94
41275135--41275332	82	2.4	82	85	0	252	35	22	24	17	1.95
41276451--41276475	13	1.9	13	100	0	50	44	8	16	32	1.76
41276713--41276764	26	2.0	26	100	0	104	30	19	23	26	1.98
41280862--41281321	44	10.5	44	67	9	168	30	17	23	29	1.97
41280713--41281382	132	5.1	132	91	1	985	30	18	21	29	1.97
41283597--41283637	9	4.4	9	84	3	55	12	4	0	82	0.81
41284331--41284370	3	13.0	3	84	5	53	32	0	2	65	1.06
41284832--41284857	13	2.0	13	100	0	52	30	0	7	61	1.24
41286106--41286142	9	4.1	9	86	13	58	45	0	0	54	1.00
41286319--41286374	21	2.6	22	81	16	64	48	0	8	42	1.34
41287196--41287258	21	3.1	21	72	19	62	60	1	4	33	1.27
41287210--41287282	30	2.5	29	81	16	80	58	1	5	34	1.29
41287250--41287293	18	2.4	19	88	3	63	59	2	6	31	1.36
41288138--41288175	20	1.9	20	89	10	60	28	0	21	50	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41289077--41289122	24	1.9	24	86	0	65	28	15	17	39	1.90
41292708--41292755	24	2.0	24	95	0	87	18	18	12	50	1.78
41303282--41303364	32	2.6	32	88	1	121	15	40	24	19	1.90
41315240--41315277	9	4.2	9	100	0	76	68	0	0	31	0.90
41315773--41315809	9	4.1	9	92	0	65	29	10	13	45	1.77
41315863--41315893	9	3.4	9	90	0	53	38	22	12	25	1.90
41316422--41316461	20	2.0	20	90	0	62	22	17	27	32	1.96
41321066--41321107	18	2.4	17	84	11	50	30	23	16	28	1.96
41329486--41329520	12	2.9	12	82	0	52	22	51	20	5	1.68
41342891--41343321	44	9.9	44	79	3	417	33	16	20	30	1.94
41342892--41343257	127	2.8	130	80	3	398	33	16	18	30	1.94
41342891--41343507	88	7.0	88	71	12	431	33	16	19	29	1.94
41344921--41344960	21	1.9	21	90	10	64	22	0	0	77	0.77
41344921--41344960	16	2.5	17	92	8	66	22	0	0	77	0.77
41345022--41345062	3	13.7	3	84	0	55	29	4	2	63	1.28
41346604--41346699	41	2.4	40	91	1	147	28	15	21	34	1.94
41349357--41349415	21	3.0	20	80	9	77	30	25	15	28	1.96
41350211--41350288	35	2.2	34	80	6	84	61	0	2	35	1.10
41354653--41354759	46	2.3	46	96	0	196	32	7	29	29	1.85
41354729--41354789	30	2.0	30	100	0	122	39	9	26	24	1.86
41354684--41354835	76	2.0	76	97	0	286	35	9	28	26	1.87
41354760--41354868	46	2.4	46	95	0	191	36	10	25	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41357164--41357197	17	2.1	17	88	5	52	26	5	20	47	1.73
41359712--41359796	27	3.2	26	76	14	84	70	2	1	25	1.06
41359713--41359798	9	9.9	8	71	21	50	69	2	1	26	1.07
41359710--41359791	17	4.5	18	75	16	62	67	2	1	29	1.11
41360190--41360295	48	2.2	48	86	0	140	21	9	39	29	1.85
41367075--41367104	12	2.5	12	94	0	51	80	6	3	10	1.01
41367517--41367541	6	4.2	6	100	0	50	0	68	16	16	1.22
41367541--41367567	6	4.5	6	100	0	54	33	48	0	18	1.49
41369950--41370412	126	3.7	125	82	2	552	31	16	22	30	1.95
41369950--41370412	252	1.8	252	86	2	680	31	16	22	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185