genome.fa.s5.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  104  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32801013--32801037	13	1.9	13	100	0	50	0	8	0	92	0.40
32801009--32801037	14	2.0	15	93	6	51	0	10	0	89	0.48
32808601--32808736	50	2.7	51	82	10	179	21	28	23	26	1.99
32818653--32818679	7	3.9	7	100	0	54	88	0	11	0	0.50
32820723--32820762	2	20.0	2	100	0	80	50	0	50	0	1.00
32826347--32826383	17	2.1	18	90	5	58	43	5	5	45	1.49
32829711--32829772	31	2.0	31	100	0	124	38	3	16	41	1.64
32833341--32833885	271	2.0	271	99	0	1081	39	18	5	36	1.73
32834468--32834528	21	2.9	21	90	0	86	47	14	22	14	1.81
32836266--32836336	26	2.8	26	80	2	81	33	22	25	18	1.96
32844523--32844835	50	6.3	50	92	0	493	26	20	31	22	1.98
32846034--32846084	23	2.2	23	92	0	84	41	21	9	27	1.84
32850831--32850910	24	3.3	24	76	10	83	32	21	28	17	1.96
32850831--32850932	24	4.2	24	76	8	82	33	19	29	17	1.95
32868270--32868395	58	2.2	58	88	5	184	46	4	16	31	1.68
32875070--32875114	18	2.4	18	81	3	54	66	0	0	33	0.92
32879363--32879865	247	2.0	247	96	0	927	35	15	14	33	1.88
32888903--32888945	19	2.3	19	88	4	61	46	0	18	34	1.50
32890585--32890655	28	2.5	28	86	4	88	26	28	28	16	1.97
32892668--32892708	19	2.2	19	95	4	75	29	4	7	58	1.46
32893172--32893286	16	7.2	16	87	3	151	27	26	5	40	1.77
32895601--32896147	291	1.9	291	89	0	853	36	13	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32897426--32897467	22	1.9	22	90	0	66	42	9	0	47	1.36
32902677--32902701	4	6.2	4	100	0	50	24	0	0	76	0.80
32907861--32907894	9	3.8	9	84	0	50	85	0	5	8	0.75
32908778--32909435	44	14.6	45	69	12	199	31	19	20	27	1.97
32908862--32909036	87	2.0	88	85	2	235	32	17	22	27	1.96
32908953--32909254	137	2.2	136	91	2	473	32	18	20	29	1.96
32909191--32909358	93	1.8	90	83	3	219	31	21	21	25	1.98
32910226--32910260	5	7.0	5	100	0	70	20	0	0	80	0.72
32911467--32911736	130	2.1	131	91	0	443	37	12	14	35	1.84
32923241--32923269	5	5.8	5	100	0	58	62	0	0	37	0.96
32924346--32924400	20	2.9	19	77	15	60	50	1	0	47	1.11
32926157--32926419	134	2.0	134	90	1	411	30	21	19	29	1.97
32933570--32933626	21	2.8	21	84	5	73	40	19	26	14	1.89
32935348--32935379	17	1.9	17	93	6	57	40	9	0	50	1.35
32938630--32938675	14	3.5	14	77	11	53	80	6	0	13	0.89
32938626--32938674	22	2.1	22	81	11	53	81	6	0	12	0.86
32938637--32938683	22	2.1	23	84	4	60	78	4	0	17	0.90
32939078--32939102	13	1.9	13	100	0	50	20	0	0	80	0.72
32944928--32945495	126	4.5	126	84	3	707	30	15	22	30	1.95
32944928--32945495	251	2.3	250	86	2	766	30	15	22	30	1.95
32948669--32949164	22	23.0	22	84	5	604	24	0	30	43	1.59
32948669--32949164	43	11.5	43	84	4	633	24	0	30	43	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32949740--32949782	18	2.4	18	84	0	59	46	9	30	13	1.75
32950521--32950558	20	1.9	20	84	10	51	55	7	2	34	1.43
32951209--32951248	21	1.9	21	100	0	80	25	25	22	27	2.00
32951527--32951624	51	1.9	51	87	4	144	45	3	24	26	1.67
32951586--32951652	22	3.0	22	76	23	77	43	1	26	28	1.64
32951586--32951645	11	5.4	11	74	21	54	43	1	25	30	1.64
32955082--32955155	33	2.2	33	97	2	139	36	8	21	33	1.83
32955885--32956013	41	3.1	41	61	20	95	42	13	8	34	1.75
32955885--32956052	84	2.0	84	98	0	327	41	16	8	33	1.80
32956508--32956550	3	14.3	3	100	0	86	67	0	0	32	0.91
32958270--32959277	44	22.5	44	71	6	561	27	24	18	29	1.98
32958244--32958415	89	1.9	89	85	2	238	29	25	17	27	1.97
32958198--32959125	225	4.1	223	83	4	1220	27	24	17	29	1.98
32958292--32958510	92	2.4	91	81	6	214	29	24	17	28	1.98
32958333--32958586	136	1.9	133	87	4	375	27	24	18	29	1.98
32958494--32959277	89	8.8	89	82	4	853	26	23	19	30	1.98
32958291--32959277	314	3.1	314	84	4	1238	27	24	18	30	1.98
32958672--32959036	136	2.7	136	96	1	655	28	24	17	29	1.98
32958333--32959184	450	1.9	449	95	0	1553	27	24	18	29	1.98
32962701--32962743	22	2.0	22	81	9	52	53	11	11	23	1.69
32962742--32962807	22	3.1	22	81	14	77	74	4	10	10	1.21
32964995--32965031	4	9.2	4	100	0	74	24	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32966061--32966103	22	2.0	22	81	9	52	34	0	6	58	1.25
32967801--32967905	43	2.4	43	83	0	138	32	25	15	26	1.95
32968247--32968384	66	2.1	66	84	2	179	13	24	18	42	1.87
32976819--32976844	9	2.9	9	100	0	52	34	0	19	46	1.50
32977372--32977419	25	1.9	25	95	0	87	56	2	8	33	1.41
32979637--32979691	20	2.8	20	80	2	67	56	0	7	36	1.27
32980379--32980496	58	2.0	58	98	0	227	38	5	8	48	1.56
32981163--32981288	41	3.1	41	83	2	164	17	26	18	38	1.92
32981177--32981302	41	3.1	41	84	1	164	19	23	15	41	1.90
32983121--32983177	10	5.7	10	77	6	62	36	0	7	56	1.27
32983121--32983177	20	2.8	19	84	5	69	36	0	7	56	1.27
32983624--32983668	20	2.2	21	92	4	74	51	17	4	26	1.65
32983965--32984049	43	2.0	43	92	0	143	37	5	20	36	1.77
32984362--32984423	31	2.0	31	96	0	115	43	3	25	27	1.70
32986203--32986254	25	2.1	25	96	0	95	15	3	19	61	1.48
32990679--32990720	20	2.1	20	86	0	57	47	0	7	45	1.30
32990868--32990906	21	1.9	21	84	5	53	35	0	5	58	1.20
32995432--32995468	3	12.3	3	100	0	74	67	0	0	32	0.91
32995930--32995962	16	2.1	16	100	0	66	42	6	33	18	1.75
32996205--32996256	22	2.4	21	79	17	54	55	5	0	38	1.24
32996272--32996306	18	1.9	18	100	0	70	62	0	0	37	0.95
33002187--33002256	24	2.9	24	83	8	97	41	12	11	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33003062--33003104	7	6.3	7	94	5	79	44	0	0	55	0.99
33003198--33003265	33	2.1	33	97	0	127	51	0	7	41	1.30
33007564--33007645	42	2.0	42	85	4	112	43	18	20	17	1.88
33007590--33007687	21	4.8	21	72	8	76	46	17	15	20	1.83
33008528--33008700	83	2.1	84	90	4	269	28	11	13	45	1.79
33019943--33019987	16	2.7	18	73	16	51	53	0	2	44	1.13
33026067--33026093	13	2.1	13	100	0	54	14	37	22	25	1.93
33027531--33027579	26	2.0	24	84	8	62	55	6	0	38	1.25
33027703--33027768	31	2.2	30	84	7	82	56	4	9	30	1.51
33036280--33036369	47	1.9	47	93	0	153	27	22	22	27	1.99
33037007--33037109	53	1.9	53	94	0	179	39	10	20	29	1.86
33039131--33039171	16	2.7	15	85	10	57	48	2	0	48	1.14
33043681--33043710	10	3.1	10	95	4	53	10	0	30	60	1.30
33048171--33048212	17	2.5	17	88	0	57	30	9	14	45	1.77
33051379--33051418	19	2.0	20	85	4	55	25	0	20	55	1.44
33053134--33053240	55	1.9	55	84	3	144	28	25	25	21	1.99
33065066--33065165	37	2.7	37	92	0	155	44	27	13	16	1.84
33066520--33066552	9	3.7	9	84	15	50	12	21	0	66	1.23
33069382--33070056	113	5.9	113	87	3	937	21	23	23	31	1.99
33069382--33070056	227	3.0	224	86	3	958	21	23	23	31	1.99
33069399--33070052	340	1.9	342	90	2	1048	22	23	23	30	1.99
33071253--33071297	21	2.1	21	91	0	72	11	26	13	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33071969--33072030	31	2.0	31	81	6	72	53	9	3	33	1.50
33072020--33072071	22	2.4	22	86	0	77	46	9	0	44	1.36
33072036--33072979	81	11.7	81	99	0	1861	43	12	3	40	1.59
33073101--33073157	25	2.3	25	84	0	69	43	14	5	36	1.67
33078596--33078726	66	2.0	66	89	3	201	41	17	23	16	1.89
33078596--33078759	66	2.5	66	85	4	188	40	16	26	16	1.89
33078777--33078848	21	3.4	21	76	0	72	36	15	40	8	1.77
33079199--33079421	86	2.6	86	78	1	232	22	18	28	30	1.97
33079199--33079490	43	6.8	43	76	4	180	24	20	26	28	1.99
33079199--33079467	129	2.1	129	78	2	272	24	20	26	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185