genome.fa.s5.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  119  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36940577--36941425	44	19.3	43	62	15	155	28	24	19	27	1.98
36940345--36941627	132	9.7	132	95	0	2264	29	24	18	27	1.98
36941763--36942141	132	2.9	132	90	0	596	30	23	18	27	1.98
36943447--36943482	16	2.2	17	90	9	58	13	19	0	66	1.24
36947483--36947528	14	3.4	14	84	3	58	56	10	2	30	1.46
36953184--36953241	4	14.5	4	92	0	98	53	20	0	25	1.46
36957760--36957844	41	2.1	41	82	6	113	34	25	22	17	1.96
36959672--36959784	34	3.4	34	84	7	151	30	8	17	43	1.80
36961759--36961809	11	5.1	11	79	18	58	49	0	0	50	1.00
36962450--36962739	96	3.0	97	89	3	433	39	17	2	41	1.61
36962450--36962783	96	3.4	97	85	7	410	39	16	1	42	1.59
36962864--36962901	19	2.0	19	89	0	58	28	23	31	15	1.96
36962891--36962999	40	2.7	40	87	2	166	21	23	25	29	1.99
36964852--36964920	34	2.0	34	82	0	84	26	24	26	23	2.00
36969995--36970083	46	2.0	45	97	2	169	43	40	11	4	1.61
36974352--36974425	37	2.0	37	94	0	130	29	21	18	29	1.97
36983090--36983387	46	6.8	45	71	14	189	31	20	21	26	1.98
36983090--36983453	44	8.5	43	71	14	175	30	21	21	26	1.98
36983260--36983465	90	2.4	83	81	8	209	29	22	22	25	1.99
36983305--36983465	82	1.9	85	83	6	211	27	22	24	25	2.00
36989194--36989585	124	3.2	124	96	0	712	34	17	20	27	1.95
36989560--36989606	14	3.4	14	82	5	69	25	19	25	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36989568--36989608	13	3.1	13	79	6	55	26	17	26	29	1.97
36989605--36989689	21	4.0	21	93	3	152	23	0	31	44	1.54
36989711--36989735	12	2.1	12	100	0	50	60	0	0	40	0.97
36990247--36990289	18	2.4	18	88	0	59	44	9	27	18	1.80
36990936--36990961	7	3.7	7	100	0	52	57	15	0	26	1.38
36992184--36992214	11	2.8	11	95	0	53	48	3	29	19	1.64
36992723--36992751	2	14.5	2	100	0	58	48	0	0	51	1.00
36992986--36993053	30	2.3	29	82	12	77	36	4	4	54	1.41
36993621--36993662	10	4.6	9	82	8	50	9	9	2	78	1.05
36993647--36993692	23	2.0	23	86	0	65	8	10	10	69	1.37
36994859--36994908	20	2.5	20	83	0	55	14	12	44	30	1.81
36994849--36994906	13	4.3	13	73	6	53	12	8	46	32	1.71
36997532--36997743	35	5.6	39	69	19	128	22	21	23	33	1.98
36997483--36997817	75	4.5	76	81	5	325	22	22	23	32	1.98
36998386--36998449	31	2.1	31	100	0	128	32	20	28	18	1.96
37007143--37007190	22	2.2	22	85	7	62	41	2	0	56	1.11
37011384--37011413	5	6.0	5	100	0	60	80	0	0	20	0.72
37013304--37013341	17	2.2	18	85	4	51	28	0	18	52	1.45
37013750--37013786	17	2.1	18	90	5	58	24	0	2	72	0.97
37013750--37013786	13	2.9	14	88	11	53	24	0	2	72	0.97
37018868--37018958	46	2.0	46	82	2	110	25	21	20	31	1.98
37021564--37021608	23	2.0	23	90	0	72	60	13	0	26	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37030528--37030597	21	3.3	21	75	0	77	11	25	27	35	1.90
37041345--37041406	30	2.0	32	90	6	101	66	0	4	29	1.12
37043016--37043079	31	2.1	31	96	0	119	29	15	31	23	1.95
37043549--37043740	41	4.5	42	77	10	190	34	2	0	63	1.09
37043621--37043651	9	3.4	9	100	0	62	19	0	0	80	0.71
37043548--37043728	90	2.0	90	88	4	267	33	2	0	64	1.08
37043647--37043714	10	6.5	10	73	17	50	39	1	0	58	1.07
37043599--37043734	11	13.1	11	71	20	73	35	1	0	63	1.04
37044875--37044917	3	14.0	3	85	4	59	60	0	4	34	1.17
37044875--37044917	16	2.8	16	89	3	61	60	0	4	34	1.17
37044866--37044919	25	2.2	25	86	6	83	62	1	3	31	1.23
37047840--37047994	22	7.0	22	83	0	211	41	18	10	29	1.84
37047840--37047994	44	3.5	44	94	0	283	41	18	10	29	1.84
37048097--37048402	43	7.2	43	84	4	325	26	26	19	27	1.99
37048840--37048890	21	2.4	21	86	0	66	3	43	17	35	1.68
37048754--37049017	87	3.0	87	93	1	431	12	29	17	39	1.87
37048927--37048977	21	2.4	21	86	0	66	3	43	17	35	1.68
37054443--37054643	9	23.4	9	72	15	140	30	0	17	50	1.50
37054452--37054536	16	5.2	16	80	10	84	34	0	17	48	1.48
37054443--37054664	25	8.8	25	77	11	161	30	0	18	50	1.51
37054443--37054574	41	3.2	41	80	14	146	34	0	18	46	1.50
37054456--37054549	16	5.8	16	81	9	75	34	0	20	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37054628--37054672	12	3.8	12	90	0	72	28	2	17	51	1.58
37054621--37054679	24	2.5	24	89	5	86	27	1	18	52	1.55
37054631--37054685	24	2.5	22	85	8	67	27	1	21	49	1.60
37054746--37054798	17	3.1	18	74	20	60	58	1	0	39	1.09
37054799--37054863	9	7.0	9	71	13	51	40	0	15	44	1.46
37054828--37054863	18	2.0	18	94	0	63	41	0	16	41	1.48
37054874--37054932	17	3.4	17	75	17	59	61	1	1	35	1.16
37058418--37058907	115	4.3	114	83	1	572	27	25	21	25	1.99
37058418--37058911	228	2.2	228	85	1	652	26	26	21	25	1.99
37058809--37059055	74	3.4	74	90	1	365	25	26	21	26	2.00
37058696--37059167	260	1.8	259	87	3	707	25	26	22	26	2.00
37058954--37059167	115	1.9	113	86	5	306	25	28	21	24	1.99
37059287--37059341	11	5.0	11	70	16	51	45	18	1	34	1.60
37059282--37059347	22	3.0	21	80	6	78	45	16	3	34	1.63
37060122--37060239	42	2.8	43	80	6	141	30	26	17	25	1.97
37061902--37061971	5	13.8	5	82	14	90	21	0	1	77	0.85
37062029--37062076	24	2.0	25	83	4	62	18	10	0	70	1.15
37062131--37062177	24	2.0	24	91	4	78	21	19	0	59	1.38
37062980--37063090	25	4.4	26	71	6	86	20	27	18	33	1.96
37062981--37063095	50	2.3	49	80	3	113	21	26	18	33	1.96
37063023--37063117	25	3.8	25	79	5	93	22	28	20	29	1.98
37063023--37063117	50	1.9	50	82	4	120	22	28	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37063860--37063964	28	3.8	28	84	2	131	28	20	24	25	1.99
37063841--37063982	56	2.4	61	74	13	152	32	19	22	25	1.98
37064301--37064566	27	9.9	27	79	11	228	18	20	18	42	1.89
37064298--37064575	54	5.2	54	80	5	278	19	20	17	42	1.89
37064299--37064554	107	2.4	105	83	7	309	18	21	17	42	1.90
37070400--37070440	21	1.9	22	85	5	57	12	7	2	78	1.06
37086671--37086711	21	1.9	22	85	5	57	43	4	14	36	1.67
37089775--37089812	20	1.9	20	89	10	60	34	2	7	55	1.43
37093640--37093762	29	4.4	28	74	9	92	35	21	30	13	1.91
37093678--37093756	26	3.0	26	79	7	79	35	21	31	11	1.89
37096803--37096852	6	8.2	6	82	12	57	46	0	0	54	1.00
37096794--37096840	25	1.9	24	95	4	85	40	0	0	59	0.97
37096793--37096871	31	2.6	30	86	9	108	39	0	0	60	0.97
37096876--37096928	20	2.6	19	80	14	52	28	0	7	64	1.21
37097625--37097655	7	4.3	7	92	8	53	45	0	0	54	0.99
37097625--37097655	15	2.1	14	94	5	53	45	0	0	54	0.99
37106070--37106214	63	2.3	63	86	0	191	26	6	34	33	1.81
37114003--37114043	21	2.0	21	100	0	82	4	51	4	39	1.45
37123737--37123770	9	3.8	9	92	0	59	38	29	8	23	1.85
37131250--37131302	27	1.9	28	88	3	81	45	0	0	54	0.99
37131256--37131314	27	2.2	27	84	6	75	47	0	0	52	1.00
37131377--37131496	33	3.4	33	65	20	89	40	10	4	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37131746--37131929	64	3.1	58	72	19	198	51	4	1	42	1.31
37131747--37132003	119	2.2	120	94	0	453	51	4	1	42	1.30
37131942--37132031	44	2.1	43	83	6	110	50	6	1	42	1.36
37131937--37132041	43	2.5	44	75	14	105	52	5	0	40	1.32
37133366--37133432	33	2.0	33	100	0	134	46	14	8	29	1.76
37135099--37135132	17	2.0	17	94	0	59	50	17	2	29	1.61
37137884--37137944	27	2.3	27	82	5	70	22	26	14	36	1.93
37141613--37141668	29	1.9	29	88	0	85	35	16	12	35	1.86
37142826--37142903	37	2.1	38	87	2	113	48	3	10	37	1.55
37159635--37159672	11	3.7	10	83	16	51	18	2	5	73	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185