genome.fa.s5.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  44  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13090085--13090110	12	2.2	12	100	0	52	46	15	0	38	1.46
13090465--13090497	17	1.9	17	88	11	50	57	3	0	39	1.14
13104092--13104133	2	22.5	2	81	13	54	50	0	0	50	1.00
13105617--13105667	19	2.7	18	81	6	57	31	1	0	66	1.03
13107206--13107266	18	3.4	18	93	0	95	22	26	9	40	1.85
13108573--13108717	10	15.5	10	64	18	55	64	0	2	33	1.10
13108589--13108718	19	6.8	19	71	13	79	61	0	2	35	1.14
13108587--13108642	29	1.9	29	82	7	69	60	0	1	37	1.07
13108574--13108718	9	15.7	9	68	16	91	63	0	2	33	1.11
13108590--13108717	39	3.3	40	79	16	119	62	0	2	34	1.13
13108573--13108728	20	8.3	19	72	14	74	64	1	2	32	1.15
13108969--13109041	19	3.8	19	83	7	67	35	2	0	61	1.10
13108988--13109048	19	3.4	17	84	8	68	37	1	0	60	1.07
13108989--13109079	10	9.2	10	69	19	66	38	2	0	59	1.10
13108989--13109076	19	4.4	20	77	16	60	39	2	0	57	1.11
13108998--13109048	19	2.7	19	88	8	70	37	1	0	60	1.08
13110860--13110885	5	5.2	5	100	0	52	19	0	0	80	0.71
13118922--13118998	40	1.9	40	89	0	118	23	24	27	24	2.00
13120683--13120749	30	2.2	30	82	7	82	26	32	11	28	1.92
13125208--13125246	14	2.9	14	84	3	53	53	0	0	46	1.00
13125214--13125248	8	4.2	8	92	3	52	51	0	0	48	1.00
13125204--13125283	22	3.6	22	78	9	83	56	1	1	41	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13125233--13125283	11	4.5	11	78	4	57	56	1	1	39	1.22
13125803--13125840	17	2.2	17	100	0	76	47	10	26	15	1.78
13128889--13128946	29	2.0	29	83	6	73	58	6	29	5	1.46
13130550--13130602	27	2.0	27	96	0	97	20	9	7	62	1.50
13130707--13130731	8	3.1	8	100	0	50	60	0	0	40	0.97
13130937--13130972	17	2.1	17	100	0	72	36	5	5	52	1.48
13131669--13131699	15	2.1	15	100	0	62	38	12	32	16	1.86
13133674--13133732	24	2.5	24	94	0	100	42	0	27	30	1.56
13133773--13133885	37	3.1	37	93	1	183	33	5	13	47	1.65
13133782--13133879	17	5.4	17	65	13	52	33	4	12	50	1.59
13133886--13134086	9	21.6	9	82	8	215	22	8	31	36	1.86
13133975--13134025	17	2.9	17	91	2	75	19	11	29	39	1.87
13134149--13134208	27	2.2	27	75	0	66	36	8	18	36	1.81
13134835--13134879	11	4.1	11	85	8	65	28	15	8	46	1.76
13142295--13142378	20	4.4	18	68	24	57	40	19	0	40	1.51
13142290--13142387	31	3.4	30	66	24	75	40	19	0	39	1.52
13142272--13142408	57	2.4	57	86	3	179	36	20	1	41	1.61
13142272--13142421	56	2.6	57	85	3	160	36	21	1	41	1.62
13145076--13145117	5	8.8	5	85	15	54	78	0	21	0	0.75
13145076--13145116	18	2.1	19	86	13	57	80	0	19	0	0.71
13145358--13145406	25	2.0	25	83	0	62	38	0	16	44	1.48
13145802--13145929	43	3.0	43	89	3	197	51	3	20	25	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13147614--13147651	18	2.1	19	90	5	60	50	0	2	47	1.15
13154782--13154814	17	1.9	17	93	0	57	15	3	3	78	0.99
13159461--13159595	68	2.0	69	88	1	200	49	5	3	41	1.43
13162340--13162437	49	2.0	49	93	0	169	30	20	7	41	1.79
13165391--13165441	25	2.0	25	100	0	102	37	23	11	27	1.90
13166346--13166387	17	2.5	17	84	3	50	26	21	14	38	1.91
13190490--13190528	17	2.2	17	86	4	51	38	0	5	56	1.22
13199720--13199944	25	9.1	26	71	12	93	19	24	21	35	1.96
13199794--13199841	23	2.1	23	88	0	69	18	29	20	31	1.97
13199780--13199920	73	1.9	73	84	8	189	19	26	21	31	1.98
13205502--13205578	29	2.7	27	81	16	86	23	14	22	40	1.90
13205621--13205784	29	5.7	29	79	5	138	26	16	18	39	1.91
13211940--13211983	18	2.3	19	85	14	56	61	2	4	31	1.28
13214450--13214691	121	2.0	121	99	0	475	30	18	23	26	1.98
13218721--13218799	39	2.0	39	100	0	158	37	5	25	31	1.78
13238202--13238307	54	2.0	54	96	0	194	30	20	18	30	1.97
13242240--13242325	40	2.2	40	85	4	111	31	18	27	22	1.97
13242263--13242345	20	4.2	20	67	11	62	25	19	32	22	1.97
13248870--13249020	40	3.8	40	83	1	160	34	13	28	23	1.93
13248881--13249034	80	1.9	80	81	2	184	34	15	27	22	1.94
13252861--13253107	56	4.6	54	81	7	231	25	19	29	25	1.98
13252909--13253109	50	3.9	50	82	3	213	25	20	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13252909--13253109	100	2.0	100	83	5	249	25	20	29	23	1.99
13255164--13255193	4	7.5	4	100	0	60	76	0	0	23	0.78
13263879--13263911	17	1.9	17	93	0	57	21	30	36	12	1.90
13269845--13269891	17	2.8	17	87	3	60	51	14	14	19	1.77
13272176--13272209	14	2.3	15	90	5	52	50	5	0	44	1.26
13277332--13277459	64	2.0	64	89	0	193	34	17	17	31	1.93
13280047--13280172	63	2.0	63	82	0	153	38	27	7	26	1.82
13283426--13283482	25	2.3	25	84	0	69	29	24	22	22	1.99
13283439--13283495	25	2.3	25	81	0	69	35	17	26	21	1.95
13289951--13290709	376	2.0	375	97	0	1446	26	22	13	37	1.92
13296774--13296903	51	2.5	51	93	0	215	23	20	24	31	1.98
13296929--13296980	26	2.0	26	96	0	95	19	21	30	28	1.97
13296926--13297258	102	3.3	102	92	1	535	20	18	27	34	1.95
13299448--13299613	81	2.1	80	96	1	305	46	3	22	27	1.68
13301816--13302007	49	3.7	52	79	8	162	22	28	22	26	1.99
13303514--13303538	12	2.1	12	100	0	50	8	24	40	28	1.83
13309165--13309194	15	2.0	15	100	0	60	46	20	6	26	1.75
13310794--13310876	39	2.1	39	95	0	148	34	14	21	28	1.93
13321946--13321981	15	2.4	15	90	0	54	52	33	11	2	1.51
13323839--13324065	27	8.5	26	76	7	188	34	17	20	27	1.95
13323839--13324047	54	3.9	53	81	5	240	34	18	19	27	1.95
13323892--13324065	81	2.2	80	83	5	217	35	17	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13323840--13324048	108	1.9	108	88	1	312	34	18	19	27	1.95
13323839--13324112	81	3.4	81	77	4	214	35	17	20	26	1.95
13324133--13324181	24	2.0	24	92	0	80	20	4	28	46	1.68
13324311--13324364	26	2.1	26	89	0	81	16	22	24	37	1.94
13324366--13324473	32	3.4	32	77	10	130	18	21	24	36	1.95
13324470--13324529	22	2.7	21	75	12	59	16	23	20	40	1.91
13325138--13325179	18	2.4	18	84	4	50	42	2	14	40	1.58
13327455--13327781	27	12.1	27	81	3	320	32	18	22	26	1.97
13327436--13327780	81	4.3	81	83	1	354	33	18	21	27	1.96
13327840--13327893	24	2.2	24	90	0	81	14	12	27	44	1.82
13328040--13328124	32	2.7	33	83	8	106	18	21	22	37	1.94
13330939--13331112	94	1.9	93	88	1	267	40	9	5	44	1.60
13335386--13335450	25	2.7	25	79	9	64	30	13	6	49	1.67
13335398--13335450	25	2.2	25	83	12	67	32	13	5	49	1.65
13339896--13340431	266	2.0	266	94	0	930	22	19	22	35	1.96
13343035--13343090	25	2.4	22	78	16	67	21	10	48	19	1.79
13343041--13343094	25	2.2	25	93	0	90	22	9	48	20	1.78
13344592--13344783	27	7.1	27	82	9	198	42	15	15	26	1.87
13344592--13344783	54	3.6	54	81	4	228	42	15	15	26	1.87
13344592--13344786	80	2.4	80	84	7	227	42	15	15	26	1.87
13358217--13358260	16	2.7	15	82	10	52	6	25	2	65	1.28
13366462--13366498	16	2.3	17	81	13	51	5	21	0	72	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13367465--13367490	13	2.0	13	100	0	52	15	0	15	69	1.20
13385053--13385218	58	2.9	58	90	0	260	23	27	10	38	1.88
13385056--13385229	29	6.0	29	84	0	222	21	27	12	38	1.90
13390788--13390838	21	2.4	22	83	6	61	7	21	1	68	1.25
13390800--13390846	21	2.2	21	85	14	62	8	19	0	72	1.10
13390800--13390860	20	3.1	19	77	15	52	6	22	0	70	1.10
13393891--13393956	30	2.2	30	89	5	107	24	19	15	40	1.90
13394031--13394097	30	2.2	30	94	0	116	22	22	16	38	1.92
13393812--13394231	141	3.0	141	94	0	723	26	22	16	34	1.95
13394165--13394254	30	3.0	30	88	0	126	28	23	10	37	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185