genome.fa.s5.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  175  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52836822--52837114	47	6.3	47	91	1	338	25	18	16	39	1.91
52836822--52837114	140	2.1	141	89	3	448	25	18	16	39	1.91
52837033--52837196	71	2.3	69	80	8	179	28	14	18	39	1.90
52836822--52837185	187	1.9	187	81	9	438	25	17	16	40	1.90
52837070--52837210	23	6.0	23	75	8	106	30	13	18	37	1.89
52841650--52841715	29	2.2	30	81	2	71	22	3	27	46	1.66
52843257--52843295	18	2.1	19	95	4	71	5	30	33	30	1.79
52843339--52843377	15	2.5	15	83	8	51	12	0	33	53	1.39
52843464--52843554	34	2.8	32	78	6	101	34	2	15	48	1.57
52843621--52843877	126	2.0	125	93	0	433	37	17	17	27	1.92
52847126--52847171	24	1.9	24	95	0	83	15	4	50	30	1.63
52849064--52849103	18	2.2	18	86	0	53	37	20	10	32	1.85
52849102--52849176	37	2.0	37	92	0	123	48	13	2	36	1.57
52849304--52849381	38	2.0	39	90	7	124	17	3	26	51	1.63
52849362--52849386	13	1.9	13	100	0	50	12	0	48	40	1.40
52849363--52849412	17	2.8	18	81	6	66	14	2	40	44	1.56
52849868--52849932	30	2.2	30	91	5	105	38	3	29	29	1.72
52850736--52850798	29	2.2	29	82	0	72	34	12	7	44	1.72
52863429--52863454	9	2.9	9	100	0	52	30	34	0	34	1.58
52867408--52867493	43	2.0	43	100	0	172	23	13	16	46	1.83
52873886--52873988	53	1.9	53	84	7	138	8	21	13	56	1.64
52884322--52884409	46	2.0	44	90	4	140	30	13	27	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52884315--52884448	46	3.0	45	80	4	135	34	14	24	26	1.94
52887002--52887035	7	4.6	7	89	10	50	41	32	0	26	1.56
52898005--52898173	78	2.2	78	92	0	275	31	14	23	30	1.94
52908947--52908979	17	1.9	17	100	0	66	36	18	0	45	1.49
52914161--52914292	41	3.2	41	88	5	178	56	0	3	40	1.14
52919746--52919812	33	2.0	33	83	11	84	34	0	4	61	1.16
52922661--52922842	7	25.7	7	75	12	86	45	33	0	20	1.55
52922669--52922780	49	2.3	50	81	4	120	45	35	0	18	1.50
52923229--52923377	40	3.7	40	81	3	165	26	24	22	26	2.00
52923223--52923388	40	4.2	40	80	0	107	27	24	21	26	1.99
52923416--52923544	40	3.2	39	76	7	114	28	21	18	31	1.97
52929075--52929186	56	2.0	56	94	0	197	44	20	5	29	1.73
52933420--52933461	19	2.2	18	84	16	50	30	2	0	66	1.04
52938131--52938193	25	2.5	25	77	10	65	23	19	23	33	1.97
52938178--52938244	25	2.7	25	77	13	75	34	20	20	23	1.97
52950716--52950769	28	1.9	28	88	7	83	27	22	29	20	1.98
52959778--52960205	44	9.8	45	70	16	224	32	21	21	25	1.98
52959948--52960238	43	6.7	43	74	10	234	31	23	20	24	1.98
52959991--52960283	87	3.4	87	94	2	497	30	21	22	24	1.99
52959991--52960271	43	6.6	42	72	10	187	30	22	22	25	1.99
52959781--52960283	174	2.9	170	85	7	617	31	21	21	25	1.98
52960805--52960893	46	2.0	45	97	2	169	43	40	11	4	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52970711--52970748	19	2.0	19	85	10	51	36	7	5	50	1.54
52971886--52971946	16	3.9	16	70	22	58	63	1	29	4	1.24
52972537--52972575	20	2.0	20	84	0	51	23	38	2	35	1.68
52982073--52982106	18	2.0	17	88	11	52	14	14	35	35	1.87
52987052--52987179	41	3.1	41	95	0	229	42	10	2	44	1.51
52987097--52987162	21	3.2	21	61	26	50	48	10	1	39	1.47
52987691--52987729	19	2.0	21	90	10	64	20	10	30	38	1.86
52988610--52988634	2	12.5	2	100	0	50	48	0	0	52	1.00
52988866--52988963	52	1.9	51	81	6	117	44	2	3	50	1.29
52992097--52992145	27	1.9	24	88	12	71	30	2	0	67	1.02
52992176--52992215	21	2.0	20	90	5	62	55	5	10	30	1.54
52996976--52997003	3	9.3	3	100	0	56	32	0	32	35	1.58
53016614--53016808	26	7.8	26	68	16	108	17	19	23	39	1.92
53020819--53020887	33	2.1	34	97	2	131	26	8	21	43	1.81
53027703--53027737	18	1.9	18	94	0	61	34	20	0	45	1.51
53032965--53033054	45	2.0	45	97	0	171	31	21	14	33	1.93
53033381--53033459	38	2.1	39	95	2	142	64	8	5	21	1.41
53041646--53041670	11	2.3	11	100	0	50	36	32	0	32	1.58
53042460--53042512	27	2.0	27	88	0	79	37	16	16	28	1.91
53045258--53045296	18	2.2	17	86	4	51	46	0	28	25	1.53
53047234--53047277	19	2.3	20	84	7	56	40	11	20	27	1.86
53053537--53053579	16	2.7	16	85	0	68	37	9	27	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53066811--53066877	3	22.3	3	81	6	82	61	1	5	31	1.29
53073996--53074053	23	2.6	21	78	10	62	36	5	0	58	1.20
53075659--53075729	7	9.9	8	74	22	61	35	0	0	64	0.94
53075657--53075729	15	5.2	15	75	18	68	35	0	0	64	0.94
53075658--53075722	23	2.9	23	82	8	73	35	0	0	64	0.94
53079308--53079374	34	1.9	35	87	3	100	32	8	11	46	1.72
53085785--53085831	25	2.0	24	83	8	60	46	0	4	48	1.21
53094691--53094715	3	8.3	3	100	0	50	0	0	32	68	0.90
53108665--53108738	20	3.7	21	70	13	57	59	4	4	32	1.35
53108666--53108741	40	1.9	40	86	5	109	56	5	3	34	1.40
53110105--53110157	23	2.3	23	83	3	70	30	3	3	62	1.30
53110346--53110380	7	4.9	7	96	3	61	40	17	28	14	1.88
53111149--53111173	3	8.3	3	100	0	50	32	32	0	36	1.58
53130978--53131046	16	4.2	16	96	3	129	24	0	37	37	1.56
53130978--53131046	33	2.1	32	97	2	129	24	0	37	37	1.56
53131027--53131117	45	2.0	45	85	2	121	27	6	28	37	1.82
53131037--53131140	44	2.5	42	80	12	115	32	6	26	33	1.83
53131282--53131316	18	2.0	17	88	5	52	54	0	0	45	0.99
53131265--53131706	120	3.7	120	99	0	866	47	5	2	44	1.36
53131522--53131556	18	2.0	17	88	5	52	54	0	0	45	0.99
53131642--53131676	18	2.0	17	88	5	52	54	0	0	45	0.99
53136684--53136713	7	4.3	7	100	0	60	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53136688--53136732	19	2.4	20	78	14	51	35	0	2	62	1.08
53136673--53136733	7	8.9	7	81	16	56	34	0	1	63	1.04
53145269--53145585	160	2.0	157	95	1	571	31	13	17	36	1.89
53151650--53151706	29	1.9	30	86	10	82	40	5	0	54	1.23
53151654--53151697	21	2.1	21	84	16	56	43	6	0	50	1.29
53151677--53151715	18	2.1	19	86	13	55	43	5	0	51	1.24
53151669--53151718	18	2.5	21	72	27	54	46	4	0	50	1.20
53159076--53159104	8	3.6	8	100	0	58	24	0	0	75	0.80
53161807--53161835	8	3.6	8	100	0	58	24	0	0	75	0.80
53165515--53165570	20	2.6	21	75	13	60	44	23	16	16	1.86
53165515--53165579	23	3.0	22	71	24	57	43	21	18	16	1.88
53165698--53165756	30	2.0	30	83	6	75	44	16	1	37	1.59
53166753--53166824	25	3.0	25	79	4	85	33	22	23	20	1.97
53167054--53167121	24	2.8	25	78	13	77	33	17	27	20	1.95
53167311--53167358	25	1.9	25	86	0	69	39	18	14	27	1.90
53166907--53167721	410	2.0	410	92	0	1364	35	19	17	27	1.94
53173227--53173331	52	2.0	52	94	0	183	22	0	32	43	1.60
53173234--53173317	28	3.1	28	66	30	74	21	0	33	45	1.52
53191100--53191157	22	2.6	24	76	15	61	32	15	10	41	1.81
53192244--53192292	23	2.1	24	81	11	57	38	4	0	57	1.18
53210478--53210532	27	2.0	27	83	13	69	25	20	10	43	1.84
53213058--53213096	20	2.0	19	90	5	60	30	0	2	66	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53223417--53223446	13	2.4	12	94	5	51	63	0	0	36	0.95
53225203--53225790	100	5.9	100	91	0	899	24	22	21	30	1.99
53225211--53225788	50	11.6	50	67	4	288	24	22	21	31	1.99
53233834--53233873	20	2.0	20	95	0	71	32	15	22	30	1.94
53243583--53243627	22	2.0	22	82	0	54	22	13	8	55	1.65
53249991--53250077	40	2.2	40	85	8	115	31	8	20	40	1.82
53250283--53250359	33	2.3	33	90	0	118	19	18	20	41	1.90
53250316--53250505	45	4.2	46	86	4	237	22	19	17	40	1.91
53250316--53250504	89	2.1	90	84	3	247	21	19	17	40	1.91
53250483--53250523	18	2.2	19	86	4	57	24	21	9	43	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185