genome.fa.s5.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  93  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29528026--29528093	25	2.7	25	88	0	109	36	1	17	44	1.58
29528027--29528093	16	3.9	18	77	15	79	35	1	17	44	1.58
29530496--29530560	34	1.9	34	93	6	114	29	24	20	26	1.99
29539470--29539495	12	2.2	12	100	0	52	61	15	0	23	1.33
29540959--29541019	27	2.3	27	94	2	106	34	14	9	40	1.79
29543891--29543925	15	2.3	15	85	0	52	20	11	14	54	1.70
29570294--29570345	21	2.4	21	81	15	61	26	3	7	61	1.41
29576969--29577026	25	2.3	25	96	0	107	34	10	31	24	1.89
29579497--29579526	6	5.0	6	100	0	60	66	0	16	16	1.25
29579567--29579591	13	1.9	13	100	0	50	68	0	16	16	1.22
29590373--29590445	36	2.0	36	100	0	146	30	20	16	32	1.95
29603898--29603924	14	1.9	14	100	0	54	29	7	18	44	1.77
29610522--29610602	41	2.0	40	95	2	144	48	13	22	14	1.79
29614398--29614459	10	5.9	10	74	10	52	33	32	3	30	1.74
29614398--29614460	21	3.0	21	88	2	90	33	33	3	30	1.74
29619739--29619763	7	3.6	7	100	0	50	56	0	0	44	0.99
29621001--29621059	17	3.5	17	71	0	55	45	18	8	27	1.78
29621677--29621715	18	2.2	18	86	9	53	35	10	15	38	1.81
29622006--29622120	34	3.5	31	84	12	101	47	17	2	32	1.61
29622041--29622120	34	2.4	34	91	4	126	48	15	1	35	1.52
29629842--29629901	30	2.0	30	93	0	102	55	15	3	26	1.56
29638980--29639221	50	4.9	50	84	0	279	21	27	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29645445--29645474	14	2.2	13	94	5	51	53	13	0	33	1.40
29652166--29652297	40	3.3	39	78	9	122	23	15	28	31	1.96
29652166--29652321	41	3.9	41	77	9	133	23	16	28	32	1.96
29652186--29652342	41	3.8	40	77	6	138	22	15	29	31	1.95
29657594--29657728	40	3.4	39	78	12	148	24	14	28	32	1.94
29657594--29657751	41	3.9	39	76	12	131	24	13	28	32	1.94
29659612--29659679	33	2.1	33	100	0	136	50	5	8	35	1.58
29663232--29663264	16	2.0	17	94	5	59	66	6	0	27	1.15
29664772--29665536	44	17.7	45	72	11	406	26	24	20	28	1.99
29664813--29665536	89	8.4	88	74	9	474	26	24	20	28	1.99
29664953--29665538	216	2.7	216	92	1	941	26	23	20	28	1.99
29673987--29674030	22	2.0	22	100	0	88	31	27	18	22	1.97
29677794--29677824	15	2.0	16	93	6	55	64	6	0	29	1.18
29690149--29690203	26	2.1	26	93	0	92	16	12	27	43	1.84
29702638--29702709	29	2.4	31	80	13	80	69	4	6	19	1.28
29702693--29702761	27	2.5	26	84	11	93	66	0	7	26	1.17
29702692--29702761	4	17.8	4	76	8	63	67	0	7	25	1.16
29702876--29702919	12	3.4	12	79	14	52	9	4	36	50	1.55
29703411--29703462	20	2.8	18	78	21	63	51	3	1	42	1.31
29703749--29703791	20	2.2	19	84	12	52	9	13	25	51	1.71
29704901--29704930	15	2.0	15	93	0	51	70	13	10	6	1.34
29712064--29712242	90	2.0	92	85	2	245	30	15	21	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29711530--29713068	670	2.3	656	81	6	1695	35	12	12	38	1.82
29719633--29719772	63	2.2	63	96	0	253	17	19	12	50	1.77
29731501--29731974	232	2.0	233	95	1	862	30	20	26	22	1.98
29736221--29736259	18	2.0	20	85	9	55	28	12	10	48	1.74
29755219--29755262	22	2.0	22	95	0	79	29	20	9	40	1.83
29758208--29758294	45	1.9	45	88	0	129	41	17	26	14	1.88
29760297--29760330	17	2.0	17	94	0	59	55	2	5	35	1.39
29760355--29760431	25	3.0	25	79	7	82	71	5	1	22	1.13
29760384--29760449	25	2.7	24	81	13	73	72	4	0	22	1.02
29760438--29760484	17	2.6	19	83	6	62	57	2	4	36	1.30
29760519--29760580	25	2.4	26	86	2	90	62	6	3	27	1.35
29762024--29762415	44	8.8	44	73	10	181	28	20	20	29	1.98
29762074--29762198	46	2.7	46	82	4	155	29	20	19	31	1.97
29762041--29762304	88	3.0	87	76	10	273	29	19	21	30	1.97
29763987--29764683	44	14.9	43	65	16	182	27	23	20	28	1.99
29763969--29764352	98	4.1	89	86	4	295	27	22	21	28	1.99
29764076--29764354	98	2.8	98	90	1	407	26	22	21	29	1.99
29763967--29764629	241	2.8	231	78	10	685	27	22	20	29	1.99
29764714--29764825	44	2.5	45	72	7	111	28	21	23	26	1.99
29764219--29765113	143	6.3	143	86	1	1199	26	22	20	30	1.98
29765994--29766032	10	3.8	11	83	16	57	0	15	0	84	0.62
29773834--29773859	11	2.4	11	100	0	52	61	7	0	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29773845--29773899	19	2.9	19	84	10	60	54	9	0	36	1.32
29774062--29774092	16	1.9	16	93	0	53	29	6	16	48	1.70
29777724--29777994	42	6.4	41	75	9	224	33	21	19	26	1.97
29777725--29777932	86	2.5	85	80	3	260	33	20	19	26	1.97
29778377--29778424	21	2.3	21	88	0	69	4	41	16	37	1.68
29780446--29781059	114	5.4	112	85	5	668	26	25	22	25	2.00
29780444--29781059	227	2.7	228	83	5	750	26	25	22	25	2.00
29782034--29782082	23	2.1	23	81	7	55	18	16	0	65	1.28
29783043--29783091	23	2.1	23	96	0	89	51	2	10	36	1.48
29783471--29783519	24	2.1	22	81	7	53	53	2	0	44	1.12
29785256--29785311	25	2.1	26	87	9	78	67	7	3	21	1.30
29785334--29785391	9	6.4	9	89	0	80	31	10	20	37	1.86
29785334--29785391	27	2.1	27	90	0	89	31	10	20	37	1.86
29786433--29786470	16	2.3	18	86	13	55	47	0	0	52	1.00
29791940--29792005	21	3.0	22	86	4	80	30	4	30	34	1.78
29796889--29796939	13	4.0	13	82	2	68	64	0	1	33	1.05
29806123--29806156	16	2.1	16	94	0	59	41	5	26	26	1.78
29806269--29806314	7	6.6	7	94	0	65	32	6	28	32	1.83
29806266--29806321	14	4.0	14	88	0	67	33	5	26	33	1.79
29806261--29806321	21	3.0	21	85	2	79	36	4	24	34	1.77
29812901--29813040	50	2.8	50	81	2	138	28	23	27	20	1.99
29812960--29813080	49	2.4	49	79	6	138	31	19	25	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29813380--29815677	472	4.9	472	91	1	3592	32	11	19	36	1.88
29813380--29815677	942	2.4	941	90	1	3635	32	11	19	36	1.88
29819864--29819920	13	4.4	13	80	8	53	26	3	15	54	1.57
29821158--29821221	25	2.6	23	72	13	56	21	14	17	46	1.83
29826558--29826741	91	2.0	91	98	0	359	36	17	19	26	1.94
29827658--29827754	43	2.3	43	83	3	115	27	23	15	32	1.95
29827879--29828299	92	4.6	92	85	2	533	43	16	8	31	1.78
29827879--29828299	123	3.4	121	88	2	540	43	16	8	31	1.78
29827879--29828299	31	13.7	31	86	2	528	43	16	8	31	1.78
29835010--29835078	26	2.7	26	95	0	120	15	18	23	42	1.89
29837512--29837538	11	2.5	11	100	0	54	18	11	22	48	1.79
29837580--29837613	17	2.0	17	88	0	50	5	23	8	61	1.47
29839282--29839309	10	2.8	10	100	0	56	60	7	0	32	1.24
29847535--29847573	15	2.7	15	84	4	53	17	5	28	48	1.68
29847925--29847974	24	2.1	23	88	3	73	38	12	14	36	1.83
29853013--29853096	40	2.1	41	84	2	107	29	7	19	44	1.77
29853303--29853400	45	2.2	45	87	5	144	23	16	17	42	1.88
29856092--29856168	22	3.2	22	67	22	64	54	2	7	35	1.43
29859324--29859565	50	4.7	50	77	6	193	25	28	19	26	1.99
29859955--29859996	21	2.0	20	90	4	66	26	38	11	21	1.88
29864561--29864606	13	3.5	13	93	0	83	8	43	2	45	1.47
29864561--29864610	26	1.9	26	100	0	100	8	42	4	46	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29870926--29870953	14	2.0	14	100	0	56	0	14	14	71	1.15
29872038--29872270	27	8.6	27	85	1	295	25	16	27	30	1.96
29872038--29872270	55	4.3	54	85	2	295	25	16	27	30	1.96
29872038--29872242	82	2.5	82	97	0	383	24	17	27	30	1.97
29874946--29875004	25	2.4	25	82	0	73	32	15	25	27	1.95
29882330--29882429	50	2.0	50	100	0	200	24	22	16	38	1.93
29884254--29884431	27	6.6	27	83	3	205	26	15	28	29	1.96
29884255--29884410	82	1.9	81	88	3	233	26	15	28	29	1.96
29884251--29884431	82	2.2	81	83	2	229	27	15	27	29	1.96
29892291--29892440	55	2.8	54	80	4	149	26	15	29	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185