genome.fa.s5.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  174  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52388085--52388121	15	2.5	15	87	12	58	24	16	8	51	1.71
52390295--52390350	29	1.9	29	88	0	85	28	17	17	35	1.93
52390289--52390357	29	2.4	29	82	0	84	28	17	17	36	1.93
52398189--52398231	21	2.0	21	100	0	86	30	4	4	60	1.37
52398664--52398767	20	4.9	21	69	21	65	33	0	10	54	1.41
52398647--52398784	66	2.1	66	91	0	222	32	0	12	54	1.43
52398647--52398812	66	2.5	66	87	1	208	31	0	13	54	1.44
52399871--52399913	20	2.2	20	87	8	61	58	0	2	39	1.11
52400079--52400144	11	6.4	10	80	15	64	43	0	1	54	1.09
52404972--52404999	7	4.0	7	100	0	56	14	0	0	85	0.59
52418292--52418323	16	2.0	16	100	0	64	50	6	12	31	1.65
52419602--52419644	17	2.7	15	83	13	59	13	4	13	67	1.38
52421161--52421216	22	2.6	21	86	8	76	39	19	26	14	1.90
52421162--52421229	22	3.0	22	78	18	70	38	20	25	16	1.92
52422107--52422131	13	1.9	13	100	0	50	0	16	0	84	0.63
52425052--52425099	17	2.9	17	90	3	71	27	0	18	54	1.44
52429777--52429914	46	3.0	46	93	0	231	34	9	27	28	1.88
52439131--52439190	31	2.0	30	83	3	75	45	11	5	38	1.63
52447755--52447801	16	2.9	16	81	15	60	70	2	0	27	0.99
52459703--52459748	16	2.8	17	70	9	51	41	4	0	54	1.20
52461436--52461502	22	3.2	21	68	20	59	43	1	1	53	1.19
52461450--52461516	19	3.4	19	69	18	64	43	2	0	53	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52461437--52461525	41	2.2	41	97	0	169	40	2	1	56	1.19
52461443--52461514	22	3.4	21	67	21	60	41	2	1	54	1.23
52461454--52461521	22	3.2	22	67	12	70	41	2	0	55	1.15
52472838--52472886	22	2.2	22	81	0	62	59	8	12	20	1.58
52472847--52472896	22	2.3	22	79	6	57	58	6	18	18	1.59
52493570--52493596	1	27.0	1	100	0	54	0	0	0	100	0.00
52506097--52506154	28	2.0	29	83	9	75	43	3	6	46	1.47
52507244--52507278	17	2.1	17	100	0	70	42	11	0	45	1.40
52510418--52510461	21	2.1	21	91	0	70	29	20	29	20	1.98
52516680--52516714	18	1.9	18	88	0	52	22	5	17	54	1.64
52519519--52519562	22	2.0	22	86	4	63	38	2	4	54	1.33
52524357--52524394	18	2.1	19	85	14	53	47	7	23	21	1.77
52527494--52527534	17	2.4	17	95	0	73	41	12	12	34	1.80
52536610--52536661	21	2.5	21	84	6	61	44	5	0	50	1.26
52539581--52539646	12	5.5	12	80	5	80	4	24	6	65	1.35
52539581--52539655	24	3.1	24	88	3	98	4	25	5	65	1.31
52542449--52543248	400	2.0	400	98	0	1555	28	24	16	31	1.96
52547191--52547233	13	3.3	12	87	9	50	46	13	2	37	1.57
52547173--52547236	26	2.4	26	81	2	65	43	17	1	37	1.58
52558176--52558251	38	2.0	38	94	2	136	34	1	17	47	1.56
52558314--52558360	24	2.0	24	82	0	58	4	29	2	63	1.25
52558707--52558763	28	2.0	28	100	0	114	54	14	14	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52559181--52559234	21	2.6	21	90	0	90	22	9	38	29	1.85
52561345--52561376	15	2.1	16	94	5	57	75	3	6	15	1.14
52562597--52562664	36	1.9	35	87	3	100	39	14	14	30	1.87
52571184--52571238	21	2.7	20	86	8	74	30	5	32	30	1.80
52579336--52579385	19	2.6	19	83	3	64	54	6	4	36	1.44
52580351--52580378	12	2.3	12	100	0	56	85	0	0	14	0.59
52580681--52580744	28	2.3	28	94	0	110	14	4	42	39	1.66
52598709--52598756	19	2.7	18	78	9	53	47	4	10	37	1.57
52601499--52602623	587	1.9	587	96	0	2097	35	13	17	34	1.88
52603680--52603742	32	2.0	32	96	0	117	41	6	12	39	1.69
52606662--52606705	21	2.1	22	84	12	58	25	4	4	65	1.30
52606788--52606835	24	2.0	25	84	12	64	64	2	0	33	1.05
52619459--52619648	95	2.0	95	100	0	380	43	13	16	26	1.86
52622769--52622837	16	4.2	16	92	3	120	24	1	37	36	1.65
52622769--52622837	33	2.1	32	94	2	120	24	1	37	36	1.65
52622818--52622908	45	2.0	45	85	2	121	27	6	28	37	1.82
52623073--52623107	18	2.0	17	88	5	52	54	0	0	45	0.99
52623314--52623348	18	2.0	17	88	5	52	54	0	0	45	0.99
52623056--52623716	120	5.5	120	95	1	1049	49	4	2	43	1.36
52640188--52640237	17	2.7	20	78	18	70	10	0	44	46	1.37
52644827--52644876	17	2.7	20	78	18	70	10	0	44	46	1.37
52651567--52651741	40	4.3	40	78	10	176	37	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52651613--52651656	23	1.9	23	90	0	70	45	0	0	54	0.99
52651689--52651742	11	4.9	11	77	8	65	42	1	0	55	1.10
52658111--52658154	22	2.0	22	86	0	61	70	0	0	29	0.88
52659656--52659716	25	2.5	24	82	10	63	49	3	0	47	1.18
52660063--52660143	27	3.0	27	78	12	76	44	2	8	44	1.48
52660118--52660184	29	2.3	30	82	7	75	46	2	4	46	1.38
52674169--52674245	34	2.2	35	88	9	120	45	12	15	25	1.82
52674179--52674245	34	2.0	34	96	0	125	43	13	14	28	1.84
52679016--52679044	12	2.3	13	94	5	51	82	0	13	3	0.79
52689098--52689139	15	2.9	15	79	13	52	80	4	4	9	0.99
52707206--52707239	16	2.1	16	88	0	50	67	0	2	29	1.05
52707891--52707969	29	2.8	27	81	11	70	56	1	1	40	1.15
52708188--52708249	32	1.9	34	87	9	94	45	9	4	40	1.58
52711303--52711473	72	2.4	72	88	4	258	55	13	5	25	1.59
52715950--52716120	72	2.4	72	88	4	258	55	13	5	25	1.59
52716545--52716592	18	2.7	18	93	0	78	39	10	12	37	1.77
52718471--52718523	25	2.2	24	86	6	72	52	20	24	1	1.56
52718593--52718622	14	2.1	14	100	0	60	50	23	26	0	1.50
52720579--52720613	17	2.0	18	88	5	54	62	2	11	22	1.41
52722562--52722617	21	2.6	22	75	11	62	35	5	0	58	1.21
52731497--52731577	41	2.0	41	87	0	117	29	8	12	49	1.70
52734675--52734700	3	8.7	3	100	0	52	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52736445--52736479	17	2.1	17	88	0	52	40	5	2	51	1.40
52741937--52741986	4	13.0	4	87	8	59	26	6	24	44	1.76
52754483--52754525	18	2.4	18	80	7	52	46	2	0	51	1.13
52757729--52757760	13	2.6	13	85	14	50	53	0	15	31	1.43
52763025--52763064	21	1.9	21	100	0	80	67	0	15	17	1.23
52763173--52763205	13	2.5	13	100	0	66	48	30	6	15	1.69
52764753--52764991	84	2.8	84	92	0	379	33	19	15	30	1.93
52764753--52765032	84	3.3	83	86	3	355	32	20	15	32	1.94
52765401--52765442	16	2.6	16	96	3	75	47	9	0	42	1.36
52766236--52766272	6	5.8	6	90	9	56	45	16	16	21	1.84
52766247--52766401	45	3.4	45	89	0	247	41	21	18	19	1.91
52766256--52766428	45	4.2	39	81	10	143	38	21	19	19	1.93
52766605--52766690	40	2.2	40	83	6	104	40	19	5	33	1.76
52767591--52767902	100	3.1	99	85	7	414	42	30	1	25	1.63
52767602--52767882	101	2.8	99	87	5	397	44	28	1	26	1.61
52767813--52767987	81	2.2	81	93	0	296	43	28	1	26	1.65
52778408--52778449	14	3.0	14	82	0	57	42	16	9	30	1.80
52778373--52778439	34	1.9	35	87	3	100	44	13	10	31	1.77
52782893--52782917	8	3.1	8	100	0	50	52	0	0	48	1.00
52784814--52784852	18	2.1	18	85	4	51	58	2	10	28	1.44
52786665--52786783	60	2.0	60	91	3	195	53	13	0	32	1.40
52799688--52799726	6	6.5	6	100	0	78	0	0	82	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52804536--52804571	17	2.2	17	95	5	65	27	11	5	55	1.57
52813786--52813810	4	6.2	4	100	0	50	24	0	52	24	1.48
52817332--52817362	16	1.9	16	93	0	53	67	6	16	9	1.39
52818989--52819070	31	2.8	31	71	12	75	25	15	10	47	1.78
52823558--52823583	3	8.7	3	100	0	52	34	34	0	30	1.58
52832614--52832657	23	1.9	22	82	17	54	38	0	25	36	1.56
52832645--52832726	38	2.2	38	82	12	98	43	2	20	32	1.65
52835870--52835998	43	3.0	43	78	15	158	20	19	31	28	1.97
52836822--52837072	93	2.7	93	93	0	448	24	18	15	41	1.89
52836822--52837072	47	5.4	47	94	0	450	24	18	15	41	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185