genome.fa.s5.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  39  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11481725--11481989	40	6.7	40	85	5	286	26	27	21	24	1.99
11481692--11481989	80	3.7	80	79	9	263	25	27	21	25	1.99
11481921--11481998	40	1.9	41	82	10	97	26	28	20	24	1.99
11490507--11492702	889	2.5	889	89	2	3250	35	10	16	37	1.83
11492769--11492799	15	2.1	15	93	0	53	58	16	6	19	1.59
11496128--11496174	19	2.5	19	86	6	60	27	19	8	44	1.79
11502161--11502201	20	2.0	20	100	0	82	19	19	31	29	1.96
11503239--11503639	143	2.8	143	87	3	558	30	18	22	27	1.98
11503239--11503693	143	3.2	140	81	6	492	30	18	22	28	1.97
11503964--11504003	12	3.3	12	83	13	55	77	10	0	12	0.99
11505206--11505237	17	1.9	16	93	6	55	12	3	0	84	0.74
11508429--11508461	12	3.0	11	87	12	50	78	0	0	21	0.75
11512517--11512541	7	3.6	7	100	0	50	28	0	12	60	1.32
11514594--11514765	79	2.2	79	84	3	220	25	21	27	25	1.99
11514541--11514763	40	5.6	39	81	8	209	25	21	27	25	1.99
11514621--11514798	79	2.2	80	80	3	191	25	21	28	24	1.99
11516332--11516374	18	2.4	17	85	11	59	18	30	9	41	1.82
11516759--11516857	44	2.2	44	87	3	137	40	1	11	47	1.46
11516918--11517464	23	22.6	23	78	14	507	45	23	1	29	1.61
11516957--11517021	21	3.0	20	82	10	67	47	23	0	29	1.52
11516980--11517021	21	2.0	21	90	4	68	45	26	0	28	1.54
11516966--11517070	50	2.1	51	92	1	176	46	28	0	24	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11516980--11517292	80	4.3	69	84	11	192	46	23	1	29	1.60
11517132--11517196	34	1.9	34	96	0	121	47	23	0	29	1.52
11517163--11517473	171	1.8	165	87	7	464	45	23	1	29	1.64
11517470--11517687	116	1.9	116	94	0	382	38	8	9	43	1.69
11517663--11517704	17	2.4	18	80	4	50	42	9	2	45	1.49
11520717--11521094	126	3.0	126	85	3	532	32	22	16	29	1.95
11521370--11521409	12	3.7	12	75	25	52	32	7	10	50	1.64
11522004--11522081	38	2.1	38	95	0	138	38	2	10	48	1.51
11522015--11522075	19	3.2	19	67	17	54	34	1	9	54	1.44
11531334--11531362	15	1.9	15	100	0	58	44	13	20	20	1.85
11531780--11531843	31	2.1	31	85	5	85	62	1	10	25	1.37
11531796--11531849	17	3.4	17	76	21	62	57	0	9	33	1.31
11537555--11538495	49	19.3	49	97	1	1741	32	8	29	30	1.86
11538614--11538690	37	2.1	37	90	0	118	23	18	32	25	1.97
11541190--11541297	56	1.9	55	88	1	162	35	7	15	41	1.75
11543777--11543843	33	2.0	33	83	11	84	55	13	8	22	1.66
11548496--11548663	45	3.8	45	77	3	151	40	17	18	23	1.91
11549566--11549619	20	2.7	20	97	0	99	53	3	22	20	1.61
11557524--11557564	21	2.0	21	85	9	57	17	26	24	31	1.97
11567401--11567744	102	3.4	102	88	2	471	29	15	26	28	1.96
11567401--11567738	51	6.7	50	81	4	378	29	15	26	28	1.96
11573605--11573634	16	1.9	15	93	6	51	46	6	3	43	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11574692--11574766	37	2.0	37	100	0	150	32	2	21	44	1.66
11575240--11575342	35	2.9	35	91	2	154	14	16	31	37	1.89
11577453--11577493	21	2.0	21	90	0	64	26	2	7	63	1.33
11579088--11579235	55	2.6	56	86	7	192	35	3	4	56	1.35
11579088--11579236	59	2.7	55	81	10	151	35	3	4	57	1.34
11580663--11580729	29	2.2	29	84	5	80	52	14	10	22	1.72
11580775--11580848	18	4.3	18	76	10	64	44	10	0	44	1.39
11584889--11584969	33	2.5	33	86	8	103	48	7	6	38	1.56
11584889--11584970	34	2.5	31	84	9	101	48	7	6	37	1.56
11586183--11586242	29	2.1	30	81	12	72	51	3	6	38	1.45
11588320--11588344	13	1.9	13	100	0	50	8	0	24	68	1.16
11590003--11590160	41	3.9	41	92	1	237	28	20	28	22	1.98
11590009--11590195	41	4.6	41	88	1	214	29	19	27	22	1.98
11592590--11592633	24	1.9	23	90	9	72	36	0	0	63	0.95
11592686--11592894	102	2.0	102	98	0	400	41	10	7	41	1.67
11592703--11592942	102	2.4	102	86	6	283	43	9	6	40	1.62
11592927--11592964	16	2.4	16	90	0	58	42	7	2	47	1.46
11592938--11592999	23	2.7	23	82	2	72	48	1	1	48	1.21
11595918--11595975	29	2.1	28	90	6	91	36	8	15	39	1.78
11603602--11603678	32	2.5	31	82	4	91	20	15	33	29	1.94
11604319--11604870	42	13.3	42	86	1	763	38	23	17	21	1.93
11606512--11606648	42	3.2	42	78	7	116	30	26	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11606541--11606648	44	2.5	42	86	3	135	28	28	19	23	1.98
11608152--11608204	12	4.3	12	88	4	79	7	11	1	79	1.01
11608152--11608204	25	2.2	25	89	3	81	7	11	1	79	1.01
11621852--11621898	23	2.0	23	100	0	94	8	4	21	65	1.37
11624925--11625311	194	2.0	196	97	2	733	34	18	20	27	1.95
11626238--11626500	40	6.6	40	86	3	307	24	20	28	27	1.99
11632265--11632364	52	1.9	52	95	0	182	27	22	30	21	1.98
11632698--11632808	55	2.0	56	94	1	197	27	9	31	31	1.89
11634278--11634460	40	4.6	39	81	6	170	24	20	27	26	1.99
11634314--11634494	79	2.3	80	78	3	188	26	20	27	25	1.99
11635557--11635679	61	2.0	61	92	3	203	28	17	28	25	1.98
11642219--11642441	40	5.6	40	86	3	254	24	20	27	27	1.99
11642295--11642476	79	2.3	80	83	1	224	25	20	28	25	1.99
11648739--11648832	28	3.4	28	86	2	127	28	23	23	24	1.99
11648943--11649014	26	2.8	26	89	0	99	45	19	16	18	1.85
11649062--11649127	32	2.1	32	91	0	105	28	16	19	34	1.94
11649192--11649596	27	15.1	26	77	8	147	19	16	20	43	1.87
11649234--11649595	27	13.5	27	78	4	284	19	15	20	44	1.87
11649235--11649592	108	3.3	108	84	2	445	19	15	20	44	1.86
11650245--11650313	35	2.0	35	86	11	97	59	8	26	5	1.50
11650451--11651171	365	2.0	367	89	1	1104	34	31	10	23	1.89
11653360--11653405	21	2.1	23	84	8	60	36	15	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11653510--11653553	23	1.9	23	100	0	88	65	13	0	20	1.26
11653857--11653988	50	2.6	52	78	7	144	37	12	15	34	1.86
11659389--11659508	40	3.0	40	78	3	107	35	22	19	22	1.96
11659435--11659519	40	2.1	40	80	4	91	38	21	18	21	1.93
11664915--11665102	103	1.8	103	88	2	288	28	19	25	27	1.99
11666261--11666601	44	7.3	44	67	19	136	32	18	19	29	1.96
11666261--11666601	142	2.4	142	92	0	574	32	18	19	29	1.96
11666619--11666977	50	7.2	50	73	3	301	33	22	19	24	1.97
11666619--11667128	100	5.1	100	79	5	478	33	22	19	24	1.97
11669768--11669810	7	6.3	7	86	13	63	67	0	16	16	1.24
11669771--11669810	20	2.0	20	90	9	64	70	0	15	15	1.18
11671187--11671525	142	2.4	141	92	1	570	33	18	19	28	1.95
11671545--11671902	50	7.2	50	71	4	247	33	21	19	24	1.97
11671522--11672084	199	2.8	200	79	4	533	32	23	20	24	1.98
11671524--11672063	100	5.4	100	77	6	452	32	22	20	24	1.98
11672675--11672710	16	2.2	16	90	0	54	69	8	19	2	1.27
11674152--11674236	43	2.0	43	97	0	161	35	4	12	47	1.63
11681615--11681658	23	1.9	22	82	17	54	36	25	0	38	1.56
11681703--11681796	45	2.1	45	89	0	143	32	23	18	25	1.97
11681802--11681977	50	3.5	50	78	4	185	30	28	17	23	1.97
11684755--11684945	41	4.6	42	79	6	156	24	18	26	31	1.97
11686986--11687045	14	4.1	14	76	19	68	38	18	5	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11689781--11689874	45	2.1	45	89	0	143	32	24	17	25	1.96
11689880--11690063	50	3.7	50	79	3	217	29	28	18	23	1.98
11689878--11690061	101	1.8	101	91	2	307	29	28	18	23	1.98
11694721--11694782	30	2.1	30	81	3	72	37	6	24	32	1.81
11694967--11695005	18	2.2	17	86	13	53	33	0	20	46	1.51
11695231--11695349	23	5.2	23	88	4	170	22	20	25	31	1.98
11695230--11695349	45	2.6	46	90	2	206	23	20	25	31	1.98
11698069--11698156	28	3.1	28	91	1	140	28	22	23	25	1.99
11698503--11698691	27	7.0	28	75	13	121	20	17	18	43	1.88
11698503--11698691	54	3.5	53	82	7	213	20	17	18	43	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185