genome.fa.s5.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  58  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18110618--18111901	88	14.6	88	93	1	1939	31	13	24	30	1.94
18112524--18112571	22	2.2	22	88	0	69	6	47	22	22	1.73
18112802--18112834	10	3.0	11	91	8	50	12	6	0	81	0.85
18113417--18113495	3	26.3	3	100	0	158	32	0	0	67	0.91
18114659--18114694	18	1.9	19	88	5	56	58	0	0	41	0.98
18116944--18116979	2	18.0	2	94	0	63	50	47	2	0	1.15
18135983--18136086	37	2.8	37	80	11	106	38	29	16	15	1.89
18156694--18156742	25	2.0	25	87	0	71	38	14	14	32	1.86
18161262--18161302	23	1.9	22	85	14	59	43	2	0	53	1.13
18162865--18162931	34	1.9	35	87	3	100	44	14	8	31	1.76
18166849--18166878	14	2.2	13	94	5	51	60	0	0	40	0.97
18171702--18171760	15	3.9	15	90	0	91	67	0	0	32	0.91
18171702--18171757	5	11.2	5	90	0	76	67	0	0	32	0.91
18177890--18177923	14	2.4	14	100	0	68	26	8	20	44	1.81
18183833--18183867	10	3.5	10	88	0	52	48	22	2	25	1.64
18186426--18186500	26	2.8	27	85	4	98	41	18	18	21	1.91
18186425--18186557	27	5.0	27	80	7	112	38	18	21	21	1.94
18186492--18186692	27	7.4	27	85	0	240	36	18	21	23	1.95
18186492--18186692	81	2.5	81	86	3	278	36	18	21	23	1.95
18186709--18186819	24	4.6	24	85	0	132	27	6	22	44	1.77
18186887--18186946	27	2.2	27	85	11	79	21	23	21	33	1.97
18186982--18187152	32	5.4	32	85	1	209	23	19	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18186982--18187151	63	2.7	64	87	1	252	24	19	18	37	1.94
18186967--18187152	95	2.0	95	83	2	239	23	19	18	38	1.93
18188261--18188299	20	2.0	20	90	10	62	15	23	5	56	1.59
18188508--18188742	50	4.6	50	75	7	190	23	27	21	27	1.99
18195893--18195927	10	3.5	10	84	0	52	51	25	0	22	1.48
18195889--18195926	20	1.9	20	100	0	76	52	26	0	21	1.47
18205075--18205174	50	2.0	50	98	0	191	37	6	12	45	1.66
18206212--18206280	11	6.1	11	72	11	59	50	0	1	47	1.09
18222923--18223126	41	5.0	41	80	4	241	34	17	28	20	1.95
18226176--18226228	25	2.1	25	85	0	70	28	22	18	30	1.98
18229258--18229526	137	2.0	136	82	2	333	34	23	19	22	1.96
18231204--18231270	26	2.6	26	82	0	89	25	23	26	23	2.00
18231702--18232223	257	2.0	259	95	1	933	34	6	21	37	1.81
18233943--18234335	196	2.0	196	97	0	741	25	6	25	41	1.79
18235244--18235272	15	1.9	15	100	0	58	31	13	27	27	1.94
18237983--18238023	20	2.0	21	85	9	57	29	21	4	43	1.73
18238101--18238225	50	2.5	51	85	1	153	31	28	15	25	1.95
18245792--18245975	51	3.6	51	81	5	194	32	27	15	25	1.96
18258517--18258553	16	2.3	16	90	0	56	10	32	0	56	1.34
18267767--18267848	27	3.1	26	77	18	80	46	9	19	24	1.80
18280777--18280809	17	1.9	17	93	0	57	18	15	12	54	1.71
18286409--18286441	13	2.6	13	85	4	50	18	6	9	66	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18286839--18286887	25	2.0	25	95	0	89	30	12	28	28	1.93
18286840--18286881	13	3.3	13	75	18	52	28	11	28	30	1.92
18292736--18292832	51	1.9	51	91	0	158	16	17	20	45	1.86
18314014--18314052	14	2.6	14	84	8	51	2	23	7	66	1.30
18323994--18324023	15	2.0	15	93	0	51	56	6	3	33	1.42
18333575--18333620	19	2.4	19	92	0	74	26	28	19	26	1.99
18343541--18343688	41	3.6	41	87	0	215	23	30	13	32	1.93
18343541--18343688	21	7.2	20	66	13	77	23	30	13	32	1.93
18343544--18343703	82	2.0	82	91	0	257	24	28	13	33	1.94
18347442--18347656	4	53.8	4	100	0	430	50	0	24	25	1.50
18348207--18348257	16	3.3	15	81	8	57	33	27	15	23	1.95
18352910--18352950	21	2.0	21	85	9	57	36	17	7	39	1.77
18353344--18354319	369	2.6	369	96	0	1767	26	10	27	35	1.89
18358755--18358938	40	4.6	41	82	12	208	26	22	27	24	2.00
18358807--18358971	79	2.1	79	82	8	194	27	21	27	24	1.99
18366470--18366653	40	4.7	40	77	11	175	26	20	26	26	1.99
18368853--18368894	15	2.7	15	75	17	50	16	9	11	61	1.55
18383566--18383590	13	1.9	13	100	0	50	76	0	8	16	1.02
18387268--18387335	34	2.0	34	94	0	118	32	14	17	35	1.91
18387484--18387543	30	2.0	30	96	0	111	35	13	15	36	1.86
18389914--18389962	20	2.5	20	86	6	64	42	12	14	30	1.82
18396875--18396903	3	9.7	3	100	0	58	68	0	31	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18397026--18397843	3	272.7	3	100	0	1636	66	0	33	0	0.92
18406721--18406799	37	2.1	37	90	0	122	25	31	18	24	1.98
18406917--18407409	47	10.4	47	92	1	797	29	28	9	32	1.88
18406917--18407409	143	3.5	143	94	0	837	29	28	9	32	1.88
18411910--18411945	18	2.0	18	88	0	54	33	13	13	38	1.85
18412008--18412059	20	2.6	20	93	0	86	34	5	15	44	1.70
18412271--18412341	30	2.4	29	83	9	81	36	22	18	22	1.95
18412295--18412353	30	2.0	30	96	0	109	40	23	15	20	1.90
18413778--18413816	20	2.0	20	90	10	62	15	23	5	56	1.59
18415385--18415564	50	3.6	50	89	1	263	18	31	21	28	1.97
18415592--18415679	44	2.0	44	93	0	149	25	19	11	44	1.84
18417189--18417372	50	3.6	50	80	6	163	25	29	19	26	1.99
18417235--18417371	50	2.6	52	83	9	179	23	32	19	24	1.98
18418412--18418578	50	3.2	50	77	7	120	24	26	20	28	1.99
18418450--18418576	50	2.4	50	87	7	164	25	26	19	28	1.99
18421704--18421800	48	2.0	49	91	2	160	28	25	10	35	1.89
18430099--18430135	18	1.9	18	89	10	56	64	0	35	0	0.94
18438133--18438188	27	2.1	27	86	3	78	26	23	23	26	2.00
18438174--18438267	26	3.6	26	81	2	100	29	25	10	34	1.90
18443243--18443274	7	4.6	7	100	0	64	12	12	0	75	1.06
18443244--18443336	42	2.2	43	83	12	122	24	19	5	50	1.68
18447605--18447731	43	3.0	42	83	3	139	26	14	25	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18447659--18447757	43	2.3	43	82	1	117	28	15	24	32	1.95
18452942--18452983	10	4.3	10	82	17	61	21	19	2	57	1.52
18463507--18463603	42	2.4	41	87	3	151	19	23	27	28	1.98
18463674--18463713	21	1.9	21	89	0	62	27	17	12	42	1.85
18482160--18482225	33	2.0	32	97	2	123	54	18	7	19	1.67
18483839--18485515	558	3.0	558	97	0	3162	34	13	21	31	1.92
18488606--18488783	27	6.6	27	83	3	205	26	15	28	29	1.96
18488607--18488762	82	1.9	81	88	3	233	26	15	28	29	1.96
18488603--18488783	82	2.2	81	83	2	229	27	15	27	29	1.96
18496723--18496900	27	6.6	26	82	6	178	26	15	28	29	1.96
18496724--18496879	82	1.9	81	86	3	224	26	16	28	28	1.97
18496720--18496900	82	2.2	81	82	2	220	27	16	27	29	1.97
18510356--18510397	22	1.9	23	85	9	61	66	7	2	23	1.28
18510537--18510619	30	2.7	31	76	14	82	59	4	2	33	1.32
18510756--18510799	17	2.6	17	85	3	63	47	0	11	40	1.39
18510988--18511577	88	6.7	88	82	1	664	23	25	24	26	2.00
18511088--18511576	264	1.9	264	91	0	798	22	25	24	26	2.00
18513768--18513828	26	2.3	26	83	5	70	57	4	14	22	1.57
18517474--18517515	22	1.9	23	85	9	61	66	7	2	23	1.28
18519845--18519891	19	2.5	19	80	10	60	46	2	2	48	1.25
18519892--18519957	30	2.2	28	82	12	80	54	1	1	42	1.18
18519892--18519957	28	2.2	30	82	12	84	54	1	1	42	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18527826--18527859	14	2.5	14	90	4	52	55	11	8	23	1.63
18554056--18554321	27	9.9	27	79	7	260	43	19	18	18	1.89
18554056--18554321	81	3.3	81	78	8	301	43	19	18	18	1.89
18554656--18554719	28	2.3	28	83	0	74	26	21	20	31	1.98
18561265--18561316	19	2.7	19	90	3	77	23	7	25	44	1.79
18561743--18561873	27	4.8	27	85	3	165	42	23	19	13	1.87
18561743--18561884	55	2.6	55	87	1	187	42	24	19	14	1.88
18561967--18562037	36	2.0	36	97	0	133	29	22	28	19	1.98
18562872--18562971	50	2.0	50	100	0	200	22	26	22	30	1.99
18564307--18564342	15	2.5	15	90	4	56	63	8	16	11	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185