genome.fa.s5.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  110  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34532453--34533021	265	2.1	265	92	0	924	20	23	27	28	1.99
34534076--34534120	20	2.3	20	85	11	58	4	15	0	80	0.87
34535070--34535130	26	2.3	26	83	5	70	55	6	14	22	1.62
34539368--34539420	19	2.8	19	94	0	97	37	15	9	37	1.79
34540607--34540754	74	2.0	72	96	2	269	23	25	15	35	1.94
34540607--34540758	72	2.1	71	93	4	261	23	25	15	36	1.94
34543494--34543518	3	8.3	3	100	0	50	36	0	0	64	0.94
34559123--34559172	23	2.2	23	82	7	57	10	10	2	78	1.06
34559744--34559778	15	2.2	16	90	5	54	25	5	0	68	1.11
34566376--34567007	50	12.6	51	71	11	312	31	22	21	24	1.98
34566415--34567033	51	12.4	51	73	8	412	31	22	21	23	1.98
34566526--34567033	100	5.1	100	91	1	659	31	22	21	24	1.98
34567051--34567235	41	4.4	41	67	10	120	30	21	20	27	1.98
34567090--34567270	44	4.2	44	66	17	117	29	22	20	26	1.99
34567044--34567325	129	2.2	129	93	0	483	30	20	20	28	1.98
34568843--34568969	68	1.9	68	80	12	154	36	8	4	50	1.54
34568963--34569005	20	2.2	20	86	0	59	41	6	2	48	1.43
34575006--34575143	46	3.0	46	95	0	240	28	26	8	36	1.86
34580948--34580973	7	3.7	7	100	0	52	30	0	53	15	1.42
34581736--34581776	15	2.9	15	79	20	52	39	0	0	60	0.96
34581760--34581808	26	1.9	26	83	4	64	48	2	2	46	1.25
34585475--34585532	27	2.1	28	87	3	82	51	3	0	44	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34587540--34587670	66	2.0	65	98	1	253	49	13	7	29	1.70
34597843--34597890	23	2.1	23	88	0	69	25	20	29	25	1.99
34601756--34601807	24	2.2	24	85	0	68	32	3	9	53	1.51
34604242--34604299	20	2.9	19	85	7	64	46	10	1	41	1.48
34607261--34607302	21	2.0	20	86	4	57	23	16	33	26	1.96
34609856--34609924	32	2.2	32	91	0	111	33	18	7	40	1.78
34610205--34610294	28	3.1	28	89	6	144	27	21	25	25	1.99
34610662--34611489	27	30.9	27	80	8	648	19	18	19	42	1.90
34614731--34614756	11	2.4	11	100	0	52	38	38	23	0	1.55
34619205--34619254	20	2.4	21	83	6	66	22	2	6	70	1.20
34622215--34622373	25	6.3	25	66	19	71	33	19	25	22	1.97
34622720--34622763	21	2.1	21	83	8	54	40	25	2	31	1.68
34623171--34623217	22	2.2	21	88	11	69	21	4	8	65	1.37
34629059--34629142	25	3.4	25	70	17	68	28	15	29	26	1.96
34629250--34629315	24	2.7	25	75	17	66	36	19	21	22	1.95
34629280--34629335	25	2.2	24	78	9	58	33	17	30	17	1.94
34630792--34630823	16	2.1	16	94	5	57	84	0	0	15	0.63
34630930--34630961	5	6.4	5	100	0	64	78	0	0	21	0.76
34634443--34634483	21	2.0	21	95	0	73	34	21	4	39	1.75
34635512--34635549	20	1.9	20	88	0	58	21	0	13	65	1.26
34635839--34635938	50	2.0	50	82	3	121	40	17	17	26	1.90
34636461--34636504	18	2.5	17	85	7	61	70	6	18	4	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34636429--34636483	22	2.3	24	76	20	62	72	7	16	3	1.21
34636468--34636505	18	2.1	18	95	0	67	71	5	18	5	1.25
34641506--34641552	19	2.4	19	86	10	60	31	21	4	42	1.72
34645732--34645917	33	5.6	33	70	9	110	29	24	13	31	1.94
34645758--34645949	33	5.8	32	72	9	107	30	24	14	30	1.94
34645738--34645949	100	2.1	101	85	0	282	30	24	14	31	1.94
34646023--34646063	19	2.1	20	95	4	75	48	0	0	51	1.00
34654556--34654750	92	2.1	92	82	5	241	31	21	18	28	1.97
34654611--34655496	44	19.6	44	75	9	635	31	18	20	30	1.96
34654551--34655496	138	7.0	137	76	9	590	31	18	20	29	1.96
34656091--34656128	18	2.1	18	95	0	67	68	2	23	5	1.23
34660714--34660752	16	2.4	16	86	0	51	41	17	2	38	1.64
34662297--34662346	27	1.9	25	88	8	73	40	24	20	16	1.91
34662454--34662518	25	2.6	25	78	2	69	35	18	26	20	1.95
34662832--34662860	10	2.7	11	94	5	51	37	20	0	41	1.53
34669423--34669454	8	3.9	8	95	4	55	40	12	0	46	1.42
34669800--34669837	19	2.0	19	94	0	67	34	28	21	15	1.94
34671295--34671344	21	2.4	20	83	6	64	56	16	0	28	1.41
34677272--34677311	18	2.2	18	100	0	80	20	27	0	52	1.46
34678193--34678544	82	4.3	82	97	1	640	39	12	16	31	1.86
34679521--34679573	13	4.1	13	72	0	52	35	20	5	37	1.77
34679949--34680074	31	4.1	29	72	13	83	47	5	11	34	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34679965--34680046	32	2.6	32	79	11	89	51	6	8	34	1.57
34682022--34682072	12	4.1	12	80	9	57	68	13	5	11	1.37
34692046--34692071	11	2.4	11	100	0	52	7	7	0	84	0.77
34692042--34692078	18	2.1	18	90	10	58	8	8	0	83	0.80
34697997--34698030	7	5.0	7	85	7	52	67	0	14	17	1.23
34698005--34698029	13	1.9	13	100	0	50	64	0	16	20	1.30
34698281--34698313	15	2.2	15	100	0	66	12	33	30	24	1.91
34699244--34699835	128	4.6	128	90	1	941	30	20	24	24	1.99
34699830--34700136	44	7.1	43	72	6	219	27	18	25	28	1.98
34700956--34701008	25	2.1	26	83	13	67	37	7	3	50	1.49
34701291--34701352	28	2.3	26	80	5	70	33	9	1	54	1.43
34701314--34701361	24	2.0	25	84	8	64	31	4	2	62	1.26
34702682--34702707	13	2.0	13	100	0	52	30	7	15	46	1.74
34702740--34702779	19	2.0	20	85	4	55	25	20	7	47	1.75
34705562--34705602	14	3.0	13	89	7	55	65	0	19	14	1.26
34705559--34705592	7	4.9	7	86	13	52	67	0	17	14	1.23
34705559--34705602	21	2.1	21	91	0	70	63	0	20	15	1.31
34706672--34706841	86	2.0	86	85	2	232	28	22	21	26	1.99
34706898--34707214	44	7.2	44	64	12	166	28	20	23	27	1.99
34706849--34707380	132	4.0	132	94	0	911	30	18	23	27	1.98
34719339--34719372	3	11.3	3	93	0	59	29	0	0	70	0.87
34722580--34722833	27	9.4	27	79	8	223	40	18	18	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34722580--34722830	54	4.6	54	79	4	256	41	18	18	21	1.90
34722580--34722831	81	3.1	80	79	6	256	41	19	18	21	1.91
34723161--34723271	28	4.0	28	85	0	141	20	21	25	32	1.98
34724042--34724077	18	2.1	18	89	5	56	44	11	27	16	1.82
34729279--34729596	27	11.8	27	79	5	284	43	16	18	20	1.88
34729309--34729611	81	3.7	81	82	6	326	42	16	19	21	1.88
34734853--34734952	43	2.3	43	84	3	121	18	13	27	42	1.86
34736601--34736642	9	5.0	8	94	5	66	40	0	0	59	0.97
34736652--34736690	19	2.1	19	85	9	53	71	0	17	10	1.12
34737659--34737757	41	2.4	40	81	3	99	40	1	25	33	1.62
34743156--34743228	28	2.6	28	93	0	119	53	6	2	36	1.42
34743642--34743704	31	2.0	31	93	0	108	49	9	6	34	1.61
34757027--34757069	22	2.0	22	90	0	68	60	9	9	20	1.55
34757025--34757080	22	2.5	22	82	0	58	62	10	8	17	1.52
34763254--34763282	3	9.7	3	100	0	58	31	0	0	68	0.89
34763403--34763465	32	1.9	33	84	9	85	20	17	6	55	1.63
34768216--34768248	13	2.4	14	85	10	50	51	0	0	48	1.00
34768263--34768297	16	2.2	16	89	0	52	57	0	0	42	0.99
34768258--34768304	13	3.2	15	73	14	53	51	0	0	48	1.00
34768257--34768328	29	2.4	29	80	15	85	52	1	1	44	1.18
34783975--34784026	27	1.9	27	85	14	72	34	1	40	23	1.66
34785352--34785508	3	52.3	3	100	0	314	66	33	0	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34785606--34785654	23	2.1	22	82	14	55	53	16	4	26	1.61
34787003--34787368	182	2.0	182	97	0	696	22	20	26	30	1.98
34789082--34789255	57	3.0	57	85	5	226	47	11	14	27	1.78
34791064--34791100	18	2.1	18	94	0	65	59	0	13	27	1.35
34791419--34791460	17	2.5	17	88	3	59	59	0	9	30	1.29
34792564--34792627	31	2.1	31	82	11	78	39	0	18	42	1.51
34793537--34793804	3	89.3	3	100	0	536	66	0	0	33	0.92
34795234--34795277	22	2.0	22	82	8	54	38	9	4	47	1.56
34796532--34796556	6	4.2	6	100	0	50	16	16	0	68	1.22
34797867--34797902	19	1.9	18	88	5	54	66	0	2	30	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185