genome.fa.s5.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  34  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10183398--10183805	203	2.0	203	100	0	816	21	27	16	34	1.95
10188092--10188150	26	2.3	26	93	0	100	37	15	11	35	1.84
10188863--10188928	33	2.0	34	82	8	82	22	28	21	27	1.99
10192723--10192770	20	2.6	18	75	18	53	20	2	2	75	1.02
10193874--10193903	16	1.9	15	93	6	51	46	10	10	33	1.71
10197495--10197532	14	2.7	14	91	0	58	23	0	5	71	1.07
10199300--10199443	43	3.4	41	76	7	119	33	26	16	23	1.96
10199345--10199468	44	2.9	42	80	9	126	33	28	13	24	1.93
10202889--10202935	23	2.1	23	84	7	62	51	12	4	31	1.59
10208190--10208225	12	2.7	14	83	16	58	16	11	0	72	1.12
10213729--10213850	25	4.9	25	70	14	65	63	3	0	33	1.11
10213715--10213840	15	8.2	16	63	21	56	64	3	0	31	1.15
10213936--10213968	16	2.1	16	88	5	50	30	3	0	66	1.06
10215134--10215231	50	1.9	51	95	2	180	22	17	23	36	1.94
10215841--10216031	51	3.8	50	74	12	183	26	16	27	29	1.97
10215849--10216033	101	1.8	101	87	3	273	26	17	26	29	1.97
10216037--10216135	46	2.2	43	82	12	119	24	19	24	32	1.97
10216236--10216292	30	1.9	29	89	3	87	43	3	19	33	1.68
10224704--10224895	41	4.8	41	76	10	173	21	21	26	30	1.98
10225115--10225174	7	8.7	7	74	3	50	18	1	38	41	1.60
10226802--10226881	31	2.6	31	88	7	126	22	13	20	43	1.86
10228670--10228847	27	6.6	27	83	3	205	26	15	28	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10228671--10228826	82	1.9	81	88	3	233	26	15	28	29	1.96
10228667--10228847	82	2.2	81	83	2	229	27	15	27	29	1.96
10236733--10236910	27	6.6	27	83	3	205	26	15	28	29	1.96
10236734--10236889	82	1.9	81	88	3	233	26	15	28	29	1.96
10236730--10236910	82	2.2	81	83	2	229	27	15	27	29	1.96
10238609--10238636	12	2.3	12	100	0	56	32	7	10	50	1.64
10239224--10239257	16	2.1	16	94	0	59	35	0	29	35	1.58
10239948--10240082	43	3.1	43	88	2	200	22	15	29	32	1.95
10252200--10252364	58	2.9	58	88	2	217	41	15	19	23	1.90
10252316--10252369	23	2.3	23	77	0	54	40	16	18	24	1.90
10252659--10252823	58	2.9	59	89	4	239	23	20	15	40	1.90
10268056--10268080	13	1.9	13	100	0	50	40	0	0	60	0.97
10268041--10268101	30	1.9	33	83	9	83	45	0	3	50	1.17
10268645--10268738	40	2.3	40	88	0	134	29	20	26	23	1.99
10268885--10268989	41	2.6	41	84	3	131	21	16	27	34	1.95
10269269--10269322	22	2.5	21	78	3	54	18	0	31	50	1.48
10269215--10269399	75	2.5	75	95	0	325	21	2	28	47	1.62
10269289--10269322	14	2.4	14	90	0	50	14	0	35	50	1.44
10269344--10269483	7	19.6	7	73	10	70	20	0	32	46	1.56
10269344--10269483	14	9.8	14	74	13	97	20	0	32	46	1.56
10270148--10270195	24	2.0	25	83	4	62	35	4	2	58	1.29
10273962--10274052	43	2.1	43	86	6	123	34	9	9	46	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10274439--10274766	43	7.7	43	88	1	455	25	18	29	27	1.98
10278088--10278273	52	3.3	54	70	14	137	46	13	11	28	1.78
10281896--10282073	27	6.6	27	83	3	205	26	15	28	29	1.96
10281897--10282052	82	1.9	81	88	3	233	26	15	28	29	1.96
10281893--10282073	82	2.2	81	83	2	229	27	15	27	29	1.96
10289959--10290136	27	6.6	27	83	3	205	26	15	28	29	1.96
10289960--10290115	82	1.9	81	88	3	233	26	15	28	29	1.96
10289956--10290136	82	2.2	81	83	2	229	27	15	27	29	1.96
10293761--10293799	21	1.9	20	84	5	51	30	5	10	53	1.56
10296033--10296385	121	2.9	121	83	7	471	30	15	21	31	1.95
10299179--10299527	174	2.0	174	100	0	698	40	6	10	42	1.66
10299584--10299876	22	13.7	22	77	10	263	17	1	31	50	1.53
10299567--10299622	29	1.9	29	81	0	67	21	0	26	51	1.48
10299563--10299702	66	2.1	66	82	5	167	19	0	28	52	1.46
10299726--10299762	15	2.4	16	82	17	51	16	0	29	54	1.43
10299619--10299855	125	1.9	124	88	2	359	16	0	32	49	1.52
10302366--10302421	11	5.0	11	79	12	69	44	0	30	25	1.54
10302365--10302421	22	2.5	22	88	8	80	43	0	31	24	1.54
10302365--10302428	11	5.6	12	71	23	57	40	0	32	26	1.56
10306065--10306095	13	2.4	13	100	0	62	6	35	6	51	1.53
10310931--10310967	15	2.5	15	90	0	56	45	0	0	54	1.00
10311048--10311082	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10311247--10311337	45	2.0	45	85	2	121	37	28	6	27	1.82
10312383--10312419	13	2.8	13	100	0	74	21	40	8	29	1.82
10319245--10319348	49	2.1	49	87	0	145	30	8	9	50	1.65
10320708--10320859	28	5.6	28	69	10	88	42	0	3	53	1.22
10320796--10320991	57	3.4	54	70	17	144	41	1	3	54	1.23
10320708--10320923	109	2.0	106	85	12	291	42	0	4	52	1.27
10320915--10320948	17	2.0	17	100	0	68	41	0	0	58	0.98
10320915--10320962	15	3.0	15	81	9	51	41	2	0	56	1.11
10321095--10321200	44	2.5	41	79	18	135	35	31	3	29	1.75
10321112--10321202	46	2.0	46	93	4	159	38	30	4	26	1.76
10321182--10321218	16	2.3	16	95	0	65	21	32	5	40	1.76
10322381--10322419	18	2.2	17	86	4	51	28	2	5	64	1.28
10323234--10323262	3	9.7	3	100	0	58	31	0	0	68	0.89
10323618--10323667	22	2.3	22	96	0	91	28	34	0	38	1.57
10323639--10323697	30	2.0	30	96	0	109	28	35	0	35	1.58
10323618--10323720	52	2.0	52	92	3	172	30	33	0	36	1.58
10323669--10323719	22	2.3	22	86	6	77	29	33	0	37	1.58
10323753--10323816	10	6.5	10	71	10	51	34	0	0	65	0.93
10323754--10323816	29	2.2	29	97	0	117	33	0	0	66	0.92
10324898--10324936	7	5.6	7	96	0	60	23	0	12	64	1.28
10324898--10324942	7	6.4	7	94	0	54	24	0	13	62	1.31
10326081--10326141	29	2.4	24	76	23	70	47	26	0	26	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10326030--10326172	30	4.8	30	92	3	234	47	23	0	29	1.52
10343420--10343698	123	2.3	123	94	1	488	33	20	15	30	1.94
10344610--10344688	27	2.9	27	76	12	81	62	26	6	5	1.41
10344730--10344769	16	2.5	16	87	0	62	42	7	22	27	1.80
10344947--10345070	58	2.1	58	88	2	178	52	3	0	44	1.17
10348572--10349934	23	60.0	23	69	7	434	40	24	4	30	1.75
10348566--10349944	182	7.6	182	89	0	2127	40	24	4	30	1.76
10348967--10349177	113	1.9	113	81	5	257	42	23	4	29	1.73
10350465--10351043	57	10.3	56	76	11	295	47	9	4	38	1.57
10350535--10350672	37	3.7	37	96	0	240	49	9	5	35	1.59
10350617--10350839	57	3.9	57	87	2	333	47	9	4	38	1.58
10350761--10350795	9	3.9	9	88	0	52	48	14	0	37	1.44
10350759--10350795	18	2.1	18	94	0	65	51	13	0	35	1.41
10350777--10350878	37	2.8	37	90	0	168	48	8	6	36	1.61
10350571--10351084	206	2.5	206	97	0	965	47	9	5	37	1.59
10350682--10350978	149	2.0	151	91	1	481	46	9	5	38	1.58
10350823--10351045	57	3.9	57	85	2	306	46	10	5	38	1.61
10350739--10350931	94	2.1	92	88	1	278	47	9	5	38	1.58
10350987--10351107	37	3.3	37	91	0	188	47	10	5	36	1.63
10351096--10351295	9	22.9	9	76	8	198	46	20	1	32	1.60
10350880--10351125	92	2.6	90	74	15	257	46	10	4	37	1.59
10351117--10351331	34	6.5	34	73	14	157	46	20	1	32	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10351115--10351293	95	1.9	95	83	2	234	45	20	1	32	1.61
10351106--10351331	104	2.2	102	80	7	251	46	19	1	32	1.58
10351789--10352484	348	2.0	348	97	0	1329	31	15	24	28	1.96
10352329--10353041	360	2.0	360	94	0	1266	32	17	24	24	1.97
10357503--10357527	12	2.1	12	100	0	50	16	20	16	48	1.82
10357515--10357659	42	3.5	42	93	1	247	31	20	22	26	1.98
10357631--10357688	29	2.0	29	96	0	107	22	22	24	31	1.99
10357590--10357727	71	2.0	70	91	4	224	31	21	23	23	1.99
10357698--10357816	40	2.9	40	85	5	159	22	20	21	35	1.96
10358881--10360295	46	31.1	46	70	6	592	40	24	4	30	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185