genome.fa.s5.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  84  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26493362--26493549	40	4.7	40	93	0	322	31	20	26	21	1.98
26507023--26507221	101	2.0	99	92	2	326	33	11	21	33	1.89
26507266--26507450	79	2.3	81	83	7	227	24	22	27	24	2.00
26507267--26507450	40	4.6	40	82	9	207	25	22	27	24	2.00
26507319--26507483	79	2.1	79	83	6	201	26	21	27	24	1.99
26516244--26516282	18	2.2	18	86	9	53	25	12	33	28	1.93
26524029--26524058	12	2.4	13	94	5	53	66	6	6	20	1.38
26525730--26525891	84	1.9	83	98	1	315	33	19	16	29	1.93
26529362--26529408	18	2.6	18	86	0	58	27	10	29	31	1.90
26532095--26532342	124	2.0	124	99	0	487	31	15	8	43	1.78
26533003--26533382	190	2.0	190	99	0	751	26	24	14	35	1.93
26536079--26536223	76	1.9	76	82	2	184	42	17	22	16	1.88
26537210--26537284	37	2.0	37	92	0	123	24	22	8	45	1.79
26537892--26537937	19	2.5	19	96	3	85	43	17	4	34	1.69
26539286--26539439	81	1.9	80	91	1	254	22	27	11	39	1.87
26542546--26542592	19	2.5	19	96	0	85	44	10	6	38	1.65
26542532--26542737	102	2.0	102	100	0	412	42	15	6	35	1.73
26542648--26542694	19	2.5	19	96	0	85	44	10	6	38	1.65
26545994--26546025	12	2.6	12	95	5	55	59	15	0	25	1.36
26546662--26546717	27	2.1	27	89	0	85	28	37	14	19	1.91
26548354--26548392	16	2.3	17	86	8	53	35	2	2	58	1.25
26548437--26548492	19	2.8	20	78	8	69	57	0	5	37	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26548467--26548525	28	2.1	29	87	9	88	57	0	3	38	1.15
26548477--26548551	8	8.4	8	74	20	60	60	2	1	36	1.20
26548463--26548551	27	3.3	27	81	10	94	58	2	2	37	1.23
26548506--26548563	27	2.1	28	87	3	82	63	6	1	27	1.29
26550362--26550409	17	2.8	17	90	0	69	10	20	41	27	1.85
26560482--26560666	79	2.3	81	84	7	236	24	22	27	25	2.00
26560483--26560666	40	4.6	40	83	9	216	24	22	27	25	2.00
26560535--26560699	79	2.1	79	84	6	210	26	21	27	25	1.99
26562412--26562726	162	1.9	162	87	3	456	33	23	11	32	1.90
26563454--26563560	27	3.9	27	73	10	72	29	23	16	29	1.96
26563470--26563593	57	2.2	58	85	5	164	31	22	16	29	1.95
26563470--26563573	28	3.7	28	71	13	88	30	24	15	29	1.95
26565780--26565852	17	4.9	14	73	23	60	17	17	38	26	1.92
26565798--26565851	13	3.8	13	79	16	54	16	16	40	25	1.89
26565780--26565852	28	2.4	31	84	13	98	17	17	38	26	1.92
26565780--26565834	13	3.7	14	79	16	58	16	18	38	27	1.92
26577636--26577705	25	2.8	25	82	0	86	44	21	21	12	1.85
26578211--26578351	75	1.9	75	86	5	205	29	14	12	44	1.81
26583063--26583095	14	2.3	15	94	5	59	0	33	0	66	0.92
26586011--26586048	20	1.9	20	94	0	67	55	0	26	18	1.43
26586882--26586931	16	3.2	16	70	18	52	42	4	0	54	1.19
26586880--26586949	29	2.5	26	76	14	68	47	4	1	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26590629--26590851	39	5.7	40	86	7	273	25	22	27	24	2.00
26590629--26590851	79	2.8	81	85	8	282	25	22	27	24	2.00
26590629--26590884	79	3.3	79	82	9	224	26	21	27	24	1.99
26598617--26598801	79	2.3	81	84	7	236	24	22	27	25	2.00
26598618--26598801	40	4.6	40	83	9	216	24	22	27	25	2.00
26598670--26598834	79	2.1	79	84	6	210	26	21	27	25	1.99
26601079--26601163	33	2.6	32	76	9	91	38	11	9	40	1.74
26602073--26602120	19	2.8	17	76	14	53	62	10	8	18	1.52
26605107--26605139	17	1.9	17	93	0	57	33	30	21	15	1.94
26606436--26606552	62	1.9	61	86	5	166	50	4	4	41	1.41
26607049--26607088	19	2.1	19	90	0	62	30	2	5	62	1.29
26612332--26612378	22	2.1	22	84	0	58	44	0	2	53	1.12
26621964--26622082	33	3.3	33	74	22	121	57	7	11	23	1.60
26621954--26622050	44	2.2	42	82	10	122	58	6	11	23	1.55
26622081--26622620	44	12.0	44	69	13	251	28	21	19	30	1.97
26622506--26622617	45	2.5	45	79	5	136	26	24	20	28	1.99
26622589--26622782	83	2.3	84	93	3	327	28	25	18	27	1.98
26622589--26622805	83	2.5	82	89	5	236	27	24	18	28	1.98
26627960--26628002	19	2.2	21	88	12	65	60	4	2	32	1.30
26629215--26629246	14	2.1	16	88	11	50	9	3	12	75	1.16
26634697--26634729	5	6.8	5	96	3	59	42	0	0	57	0.98
26635502--26635548	24	2.0	24	84	16	62	31	0	17	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26635706--26635841	40	3.5	40	81	10	165	26	18	22	32	1.97
26635706--26635809	37	2.7	38	88	5	147	27	19	21	31	1.97
26638285--26638491	25	8.2	25	70	12	113	32	19	26	21	1.97
26638521--26638576	26	2.2	26	93	0	94	42	21	19	16	1.89
26638641--26638699	24	2.4	26	78	16	63	30	22	28	18	1.97
26647056--26647145	46	2.0	45	89	4	137	63	11	5	20	1.47
26648486--26648569	34	2.5	35	86	5	118	61	7	5	25	1.44
26648888--26648961	38	1.9	38	100	0	148	37	27	6	28	1.82
26655834--26655894	20	3.1	19	71	17	52	19	24	24	31	1.98
26655816--26655927	40	2.8	40	87	0	125	22	21	21	34	1.97
26655846--26655911	20	3.3	20	78	0	78	21	22	24	31	1.98
26655854--26655997	20	7.2	20	65	6	76	22	19	21	36	1.95
26655859--26656002	40	3.6	39	85	3	173	22	20	20	36	1.95
26656326--26656350	11	2.3	11	100	0	50	44	8	0	48	1.32
26659115--26659223	40	2.7	40	78	13	107	33	21	31	13	1.92
26659169--26659280	20	5.6	20	67	12	52	34	16	30	18	1.93
26659172--26659283	40	2.8	40	77	9	129	35	16	29	18	1.93
26659895--26659932	19	2.1	18	85	14	51	52	13	0	34	1.40
26665561--26665595	16	2.2	16	89	0	52	68	0	8	22	1.16
26666848--26666875	14	2.0	14	100	0	56	57	7	0	35	1.26
26668660--26668741	43	1.9	43	100	0	164	31	23	24	20	1.98
26668656--26668724	21	3.2	21	68	11	68	30	21	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26672640--26672690	17	3.0	17	79	0	57	31	25	13	29	1.94
26672632--26672709	34	2.3	34	84	0	93	30	25	14	29	1.94
26704588--26704660	35	2.1	35	100	0	146	27	13	19	39	1.89
26708976--26709015	19	2.0	20	90	4	64	35	10	12	42	1.76
26710649--26710685	16	2.4	16	90	4	58	40	0	2	56	1.13
26722949--26723002	25	2.2	25	86	0	72	20	22	18	38	1.93
26722958--26723069	25	4.5	25	83	0	116	19	19	24	36	1.95
26723227--26723280	26	2.1	26	82	6	65	40	5	18	35	1.74
26725811--26725872	21	3.0	21	83	4	63	17	19	38	24	1.93
26726437--26726466	11	2.9	10	90	9	51	0	13	0	86	0.57
26726501--26726550	19	2.7	19	84	3	66	32	12	0	56	1.36
26734705--26734857	33	4.5	33	69	23	111	33	28	18	19	1.96
26734658--26734858	103	2.0	102	87	3	287	31	25	20	21	1.98
26735928--26735961	11	2.8	13	86	13	54	35	14	14	35	1.87
26745312--26745375	31	2.1	31	100	0	128	34	6	25	34	1.81
26750244--26750320	39	2.0	39	84	5	102	16	31	18	33	1.93
26752732--26752779	5	9.6	5	95	0	87	0	2	35	62	1.07
26761905--26761956	25	2.1	25	100	0	104	26	26	13	32	1.94
26763841--26763879	17	2.2	18	86	4	53	38	0	0	61	0.96
26763840--26763879	18	2.2	18	86	8	55	37	0	0	62	0.95
26763846--26763896	26	2.0	26	92	0	84	41	0	1	56	1.10
26763875--26763947	20	3.7	20	83	7	87	31	0	6	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26768311--26768365	23	2.4	23	96	0	101	32	7	12	47	1.69
26770069--26770110	19	2.3	18	80	8	50	54	0	16	28	1.42
26781298--26781367	26	2.7	26	95	0	122	28	30	20	21	1.98
26787799--26787861	27	2.3	27	80	0	72	38	15	26	19	1.92
26789477--26789978	250	2.0	250	93	0	862	29	12	17	39	1.88
26790016--26790055	21	1.9	21	94	0	71	37	10	15	37	1.80
26795717--26796177	230	2.0	230	93	0	780	33	14	21	29	1.94
26798576--26798684	33	3.3	33	85	1	119	40	34	10	14	1.80
26809202--26809231	16	1.9	15	93	6	51	66	6	0	26	1.16
26811808--26811832	11	2.3	11	100	0	50	44	0	0	56	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185