Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  167  of  185  ( 22150 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50076982--50077395
209
2.0
209
97
0
774
23
20
12
43
1.85
50088274--50088490
108
2.0
108
98
0
416
25
19
23
32
1.97
50101476--50101580
53
2.0
53
86
1
149
42
10
7
39
1.68
50107557--50107763
47
4.3
47
80
6
184
29
28
16
25
1.97
50121346--50121376
2
15.5
2
100
0
62
48
0
51
0
1.00
50122599--50122623
11
2.3
11
100
0
50
40
16
8
36
1.77
50136686--50136714
14
2.1
14
100
0
58
72
0
0
27
0.85
50137840--50137869
15
2.0
15
93
0
51
56
0
0
43
0.99
50137831--50137882
19
2.8
18
80
19
54
51
0
1
46
1.12
50144650--50144683
15
2.3
15
100
0
68
55
0
0
44
0.99
50146594--50146632
17
2.2
18
86
4
53
35
0
28
35
1.58
50148430--50148526
32
3.1
31
79
7
106
30
15
13
40
1.86
50149722--50150054
167
2.0
167
98
0
639
41
18
5
34
1.74
50150791--50150835
22
2.0
23
95
4
83
42
22
17
17
1.89
50152226--50152256
16
1.9
16
100
0
62
45
6
6
41
1.55
50160614--50160646
3
11.0
3
100
0
66
33
33
0
33
1.58
50161968--50162009
22
1.9
22
85
0
57
54
2
7
35
1.41
50173187--50173273
36
2.4
36
80
0
93
25
34
20
19
1.96
50176367--50176430
32
2.0
33
84
9
87
32
23
17
26
1.96
50191668--50191702
14
2.4
14
90
4
52
8
28
0
62
1.24
50194373--50194404
16
1.9
17
93
6
57
53
0
0
46
1.00
50194397--50194609
61
3.4
63
69
17
194
41
2
6
49
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50194359--50194651
120
2.4
120
92
2
482
42
2
5
50
1.36
50194480--50194514
18
2.0
17
88
5
52
40
0
0
60
0.97
50194600--50194634
18
2.0
17
88
5
52
45
0
0
54
0.99
50194588--50194946
148
2.4
148
96
0
657
46
3
3
47
1.34
50194747--50194781
18
2.0
17
88
5
52
45
0
0
54
0.99
50194895--50194929
18
2.0
17
88
5
52
40
0
0
60
0.97
50194883--50195191
120
2.6
121
94
1
541
43
1
4
50
1.35
50195015--50195049
18
2.0
17
88
5
52
45
0
0
54
0.99
50195135--50195169
18
2.0
17
88
5
52
45
0
0
54
0.99
50195279--50195313
18
2.0
17
88
5
52
45
0
0
54
0.99
50209744--50210041
44
6.8
45
72
13
187
31
21
21
26
1.98
50209957--50210122
44
3.8
43
77
6
156
30
21
23
25
1.99
50209963--50210124
87
1.9
87
82
2
209
29
21
24
24
1.99
50215280--50215400
61
2.0
61
96
0
224
36
18
26
19
1.94
50224336--50224720
44
8.8
45
72
14
202
31
21
21
25
1.98
50224506--50224798
87
3.4
83
85
7
338
29
22
22
25
1.99
50224549--50224745
44
4.5
44
75
9
179
29
23
21
24
1.99
50225345--50225411
15
3.9
16
74
25
66
44
44
1
8
1.44
50225333--50225410
37
2.1
37
100
0
156
42
44
2
10
1.52
50229036--50229696
88
7.6
88
85
2
721
25
22
22
29
1.99
50229110--50229248
44
3.2
44
66
15
106
23
23
26
25
2.00
50234009--50234057
19
2.5
20
80
6
57
42
12
18
26
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50246487--50246577
11
8.5
11
69
20
50
65
0
1
32
1.00
50246513--50246576
23
2.7
23
71
24
60
70
0
0
29
0.88
50247305--50247360
16
3.8
16
68
18
57
48
7
3
41
1.48
50247950--50248008
26
2.3
26
91
5
93
37
8
20
33
1.83
50250446--50250545
29
3.4
28
79
9
94
35
22
3
40
1.69
50250463--50250576
29
3.9
29
80
6
122
35
21
3
40
1.70
50250941--50251002
10
6.3
10
80
12
67
79
0
20
0
0.74
50250940--50251001
21
3.0
20
83
6
79
77
0
22
0
0.77
50251004--50251086
17
4.5
19
72
15
75
36
10
13
39
1.79
50251004--50251086
37
2.2
37
82
4
105
36
10
13
39
1.79
50262801--50263397
78
7.8
73
79
8
418
28
17
20
32
1.96
50262795--50263397
149
3.9
150
80
11
600
28
17
20
33
1.95
50262949--50263397
81
5.7
80
84
7
537
29
18
20
31
1.96
50263565--50263734
30
5.7
30
75
11
145
31
23
4
40
1.75
50263565--50263693
29
4.4
29
76
8
127
30
21
4
43
1.73
50263614--50263734
28
4.2
28
72
11
100
33
23
3
38
1.72
50263565--50263723
59
2.7
59
80
7
180
30
23
5
40
1.76
50263612--50263961
185
1.9
183
88
3
533
29
25
8
36
1.84
50264245--50264306
10
6.3
10
80
12
67
79
0
20
0
0.74
50264244--50264305
21
3.0
20
83
6
79
77
0
22
0
0.77
50264275--50264307
11
3.1
11
86
4
50
87
0
12
0
0.53
50264494--50264550
18
3.1
18
74
18
53
63
0
36
0
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50264502--50264541
20
2.0
21
90
5
64
60
0
40
0
0.97
50264503--50264551
20
2.6
18
78
12
62
57
0
42
0
0.99
50264630--50264679
10
5.2
10
82
2
59
78
0
22
0
0.76
50269903--50269978
33
2.3
33
84
8
102
48
5
1
44
1.33
50270015--50270065
23
2.1
25
82
13
63
50
5
0
43
1.26
50275732--50275791
30
2.0
31
83
3
77
38
0
41
20
1.52
50276374--50276460
22
4.0
22
92
0
129
40
16
24
19
1.91
50276449--50276497
25
2.0
25
84
8
64
36
12
24
26
1.91
50276657--50277106
225
2.0
225
100
0
900
38
19
11
31
1.86
50285188--50285225
19
2.0
19
100
0
76
36
10
36
15
1.82
50288306--50288335
15
2.0
15
93
0
51
63
0
0
36
0.95
50288964--50289006
17
2.5
17
85
7
52
53
0
2
44
1.13
50289551--50289602
20
2.5
20
84
6
59
26
1
5
65
1.26
50307095--50307131
3
12.0
3
94
5
65
64
2
0
32
1.07
50307315--50307352
17
2.3
16
95
4
67
81
0
0
18
0.69
50307313--50307354
20
2.2
18
87
8
57
83
0
0
16
0.65
50308842--50308993
40
3.8
40
81
6
198
26
21
22
30
1.99
50308826--50308994
82
2.0
83
90
1
268
25
18
22
33
1.97
50308826--50308994
40
4.1
42
76
10
152
25
18
22
33
1.97
50308965--50309361
134
3.0
131
82
6
421
27
23
20
28
1.99
50309476--50309694
45
4.9
43
77
6
190
29
26
15
28
1.96
50327926--50327963
19
2.0
20
94
5
69
78
0
0
21
0.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50329187--50329255
35
2.0
35
94
0
120
21
10
49
18
1.77
50330670--50330700
15
2.1
15
93
0
53
32
0
25
41
1.56
50337347--50337387
21
2.0
21
90
0
64
29
21
29
19
1.98
50354210--50354324
43
2.7
43
80
10
137
24
20
29
26
1.99
50357184--50357227
21
2.0
23
86
8
65
65
0
31
2
1.05
50360197--50360237
15
2.8
15
85
3
57
78
0
21
0
0.76
50365024--50365065
14
3.0
14
83
10
50
52
0
9
38
1.34
50365296--50365326
3
10.3
3
100
0
62
67
0
0
32
0.91
50366926--50367502
50
11.5
50
67
5
284
21
26
22
29
1.99
50366842--50367512
100
6.7
100
88
1
966
22
25
22
30
1.99
50368945--50368989
15
2.9
16
93
6
76
13
15
0
71
1.15
50368947--50368996
7
7.0
7
79
20
59
14
14
0
72
1.14
50368947--50369021
38
2.0
37
84
2
96
17
17
0
65
1.28
50369512--50369579
16
4.3
16
82
10
70
0
10
7
82
0.85
50369525--50369564
9
4.4
9
81
12
55
0
10
7
82
0.84
50369503--50369580
16
4.9
16
72
12
63
1
10
6
82
0.91
50369519--50369582
27
2.4
27
80
17
71
0
10
6
82
0.82
50377180--50377898
114
6.4
114
86
6
986
36
19
20
24
1.95
50381015--50381066
15
3.6
15
80
12
56
44
0
1
53
1.11
50380957--50381542
120
4.9
120
98
0
1127
43
2
5
48
1.39
50381251--50381285
18
2.0
17
88
5
52
45
0
0
54
0.99
50381371--50381405
18
2.0
17
88
5
52
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50381491--50381525
18
2.0
17
88
5
52
45
0
0
54
0.99
50381690--50381780
45
2.0
45
85
2
121
37
28
6
27
1.82
50381761--50381829
16
4.2
16
96
3
129
37
37
0
24
1.56
50381761--50381829
33
2.1
32
97
2
129
37
37
0
24
1.56
50382317--50382359
22
2.0
22
90
4
70
16
2
30
51
1.57
50382324--50382370
21
2.2
22
85
11
62
19
4
29
46
1.68
50382455--50382512
21
2.8
21
83
0
71
18
3
31
46
1.66
50382638--50382671
15
2.2
16
89
5
52
58
0
2
38
1.13
50382867--50382904
20
1.9
20
94
0
67
34
0
7
57
1.28
50383150--50383200
12
4.2
12
78
14
52
17
43
1
37
1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185