genome.fa.s5.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  99  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31446449--31446507	29	2.0	29	90	0	91	20	11	35	32	1.89
31447176--31447257	42	2.0	42	100	0	164	41	14	9	34	1.79
31453904--31453951	25	1.9	25	82	0	60	22	27	2	47	1.62
31454176--31454348	61	2.8	61	82	7	183	26	26	13	34	1.93
31459178--31459212	13	2.7	13	90	0	61	45	0	8	45	1.34
31459842--31459927	25	3.4	25	75	4	75	27	23	19	29	1.98
31462561--31462717	82	1.9	82	82	2	199	29	21	17	32	1.96
31462651--31462764	54	2.1	54	85	0	147	29	18	15	35	1.92
31462607--31463021	28	14.9	28	67	11	174	28	19	19	33	1.96
31471591--31471618	6	4.7	6	100	0	56	17	0	0	82	0.68
31472718--31472760	20	2.2	19	84	12	52	32	6	13	46	1.71
31475372--31475498	62	2.0	62	95	0	227	37	12	16	33	1.86
31475837--31475861	13	1.9	13	100	0	50	44	8	0	48	1.32
31478408--31478468	28	2.1	29	90	3	97	24	18	24	32	1.97
31478236--31478468	26	8.4	28	73	12	151	24	18	22	35	1.96
31482212--31482351	24	5.8	24	70	12	81	15	26	21	36	1.93
31485798--31485827	16	1.9	15	93	6	51	46	3	0	50	1.18
31495350--31495376	13	2.1	13	100	0	54	33	0	7	59	1.25
31501103--31501304	35	5.5	35	67	15	138	20	22	22	34	1.97
31501092--31501363	75	3.6	75	85	0	364	21	23	22	33	1.97
31503664--31503723	26	2.4	25	83	5	68	23	8	6	61	1.48
31504069--31504105	2	19.5	2	89	10	60	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31505433--31505526	48	2.0	48	87	8	138	40	27	12	19	1.88
31507948--31508041	48	2.0	48	83	8	120	40	23	12	23	1.89
31510711--31510735	7	3.6	7	100	0	50	12	0	0	88	0.53
31510791--31510832	16	2.6	16	81	11	50	35	0	0	64	0.94
31513513--31513558	24	1.9	24	90	0	74	26	10	19	43	1.84
31517729--31517796	10	6.8	10	72	11	59	61	2	1	33	1.20
31517762--31517802	19	2.1	19	86	9	55	70	0	0	29	0.87
31517727--31517796	30	2.3	29	74	11	70	60	2	1	35	1.21
31517779--31517808	14	2.1	15	93	6	53	73	0	0	26	0.84
31521121--31521195	20	3.7	19	77	13	69	72	1	21	5	1.13
31528380--31528426	24	2.0	24	84	16	62	51	17	0	31	1.46
31529166--31529235	23	2.9	24	77	14	81	51	2	0	45	1.16
31529179--31529235	25	2.4	22	78	16	60	52	3	0	43	1.18
31530493--31530525	16	2.0	17	88	5	50	18	6	0	75	1.00
31530558--31530594	16	2.3	17	86	9	51	16	21	0	62	1.33
31537712--31537768	21	2.7	22	78	13	57	24	24	38	12	1.90
31539595--31539808	106	2.0	106	92	0	356	31	18	17	33	1.94
31540451--31540499	23	2.1	24	84	3	64	12	14	2	71	1.23
31541352--31541399	14	3.5	13	86	8	60	27	2	4	66	1.21
31541456--31541512	20	2.8	20	83	0	69	29	8	5	56	1.52
31545142--31545216	8	9.2	8	79	13	82	81	8	0	10	0.88
31545136--31545190	19	2.9	18	86	10	74	80	9	0	10	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31545139--31545213	27	3.0	26	88	9	104	82	6	0	10	0.83
31545142--31545209	35	1.9	35	88	5	102	82	7	0	10	0.85
31545150--31545209	19	3.3	18	75	13	61	83	6	0	10	0.81
31545232--31545264	16	2.1	16	94	5	59	84	0	15	0	0.61
31546046--31546126	8	10.2	8	77	15	80	72	0	14	12	1.11
31546047--31546126	15	5.1	15	77	15	74	72	0	15	12	1.12
31546046--31546126	23	3.5	22	79	14	83	72	0	14	12	1.11
31547381--31548195	88	9.4	88	91	2	1075	27	22	24	25	2.00
31548334--31548894	50	11.2	50	80	5	591	31	21	20	26	1.97
31548321--31549042	100	7.2	100	89	1	932	32	21	19	26	1.97
31548321--31549042	299	2.4	300	86	2	979	32	21	19	26	1.97
31548381--31549065	50	13.7	50	74	11	451	31	22	19	25	1.98
31550421--31550468	14	3.5	13	86	8	60	27	2	4	66	1.21
31550525--31550581	20	2.8	20	83	0	69	29	8	5	56	1.52
31551556--31551599	19	2.4	19	88	3	63	70	0	6	22	1.11
31551656--31551682	14	1.9	14	100	0	54	66	3	0	29	1.09
31561510--31561539	10	2.8	11	90	10	53	10	6	6	76	1.15
31565767--31565806	20	2.0	20	100	0	80	30	25	15	30	1.95
31574531--31574788	50	5.2	50	73	4	243	29	21	25	24	1.99
31574501--31574788	100	2.9	100	92	2	463	28	21	25	24	1.99
31575680--31575708	10	2.7	11	94	5	51	13	6	0	79	0.93
31581169--31581371	102	2.0	102	90	3	320	27	17	31	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31582563--31582590	13	2.2	13	100	0	56	53	0	0	46	1.00
31585483--31585507	12	2.1	12	100	0	50	16	40	36	8	1.77
31587191--31587225	18	1.9	18	88	0	52	54	2	0	42	1.15
31594529--31594574	19	2.5	19	89	10	69	30	2	0	67	1.03
31594540--31594596	19	2.9	19	82	10	53	36	3	0	59	1.14
31594539--31594596	20	2.9	20	84	5	64	36	3	0	60	1.14
31595202--31595280	29	2.7	29	84	4	86	26	12	11	49	1.75
31595463--31595519	25	2.2	27	78	12	66	70	5	8	15	1.31
31599705--31599757	22	2.4	21	84	6	61	35	15	16	32	1.90
31602252--31602312	25	2.4	25	83	0	77	27	18	29	24	1.98
31602240--31602333	25	3.8	24	75	13	66	32	15	28	22	1.95
31603437--31603467	13	2.4	13	94	0	53	22	0	3	74	0.96
31603462--31603507	8	5.8	8	82	14	51	50	2	0	47	1.13
31605415--31605451	20	2.0	19	85	15	51	37	8	0	54	1.30
31607830--31607869	20	2.0	20	85	0	53	10	20	22	47	1.79
31614874--31614947	34	2.1	35	83	14	91	29	9	21	39	1.85
31622423--31622483	32	1.9	32	89	0	95	19	19	40	19	1.91
31623721--31623786	25	2.7	25	83	4	73	19	24	21	34	1.96
31623745--31623791	25	1.9	25	91	4	78	17	25	19	38	1.92
31623720--31623797	24	3.2	24	77	15	79	20	25	20	33	1.97
31623913--31623970	25	2.4	24	86	11	82	15	27	24	32	1.95
31623959--31624070	25	4.5	25	76	11	97	21	25	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31625912--31626003	24	3.8	24	74	8	62	16	30	20	32	1.95
31627418--31627447	8	3.8	8	95	0	51	40	0	13	46	1.43
31628346--31628450	20	5.4	19	70	11	79	20	17	8	54	1.68
31628341--31628461	39	3.1	39	98	0	233	20	19	7	52	1.69
31632183--31632216	6	5.5	6	86	6	50	41	58	0	0	0.98
31632182--31632217	13	2.8	13	87	4	56	38	61	0	0	0.96
31637776--31637829	17	3.1	17	84	10	65	66	3	1	27	1.19
31639080--31639130	26	2.0	26	100	0	102	37	15	3	43	1.66
31648621--31648675	20	2.8	20	77	5	58	32	9	20	38	1.84
31654220--31654271	18	2.9	18	94	0	86	25	11	15	48	1.78
31657841--31657985	43	3.4	42	81	4	157	26	17	26	28	1.97
31669647--31669674	10	2.8	10	100	0	56	17	0	0	82	0.68
31671331--31671379	20	2.4	21	80	16	59	46	0	12	40	1.41
31693389--31693472	28	3.0	28	96	0	159	41	0	36	21	1.53
31694082--31694158	3	25.3	3	89	2	100	32	5	1	61	1.26
31694148--31694186	15	2.5	15	83	8	51	30	7	0	61	1.24
31695522--31695546	10	2.5	10	100	0	50	36	0	8	56	1.29
31695577--31695625	19	2.5	19	96	3	89	42	0	0	57	0.99
31695580--31695645	20	3.4	19	85	6	78	43	1	3	51	1.26
31697327--31697418	44	2.1	44	89	6	141	31	4	29	34	1.77
31697556--31697913	119	3.0	119	95	0	646	51	5	0	41	1.31
31700681--31700720	18	2.2	18	95	0	71	55	5	35	5	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31704970--31705000	2	15.5	2	100	0	62	0	48	0	51	1.00
31710267--31710326	22	2.7	22	84	0	84	26	6	23	43	1.78
31710329--31710404	33	2.3	33	84	4	91	31	21	19	27	1.97
31710393--31710654	29	9.0	28	70	8	139	29	24	22	24	1.99
31710393--31710565	87	2.0	87	85	2	231	30	25	21	22	1.99
31710470--31710616	58	2.5	58	82	0	159	28	25	23	22	1.99
31710393--31710606	87	2.5	87	81	0	221	29	24	21	23	1.99
31710622--31710687	34	1.9	34	84	0	87	28	24	24	22	1.99
31712298--31712323	2	13.0	2	100	0	52	50	0	0	50	1.00
31713155--31713346	106	1.8	106	91	0	321	32	21	18	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185