genome.fa.s5.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  155  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46739673--46739729	15	3.5	15	71	17	51	49	1	1	47	1.22
46743129--46743160	5	6.4	5	100	0	64	18	0	0	81	0.70
46743132--46743167	15	2.4	15	90	0	54	19	2	0	77	0.88
46748689--46748769	25	3.2	25	65	22	69	48	11	14	25	1.77
46748675--46748778	51	2.0	51	98	0	199	50	9	13	26	1.72
46763289--46763347	31	1.9	31	92	0	100	54	5	22	18	1.63
46764723--46764782	28	2.1	29	81	9	70	48	8	5	38	1.55
46767139--46767202	22	2.9	22	75	11	67	40	6	1	51	1.36
46768465--46768600	41	3.3	41	91	0	227	24	27	19	28	1.98
46775004--46775031	13	2.2	13	100	0	56	46	25	7	21	1.76
46777203--46777245	21	2.0	22	86	4	61	44	20	0	34	1.52
46785001--46785094	45	2.1	45	93	0	161	30	24	19	25	1.98
46785096--46785281	50	3.7	49	79	9	162	31	24	17	25	1.97
46786331--46786375	23	2.0	23	86	0	63	35	8	6	48	1.61
46795561--46795629	36	1.9	36	85	5	95	28	0	4	66	1.10
46795587--46795647	26	2.3	26	81	10	70	29	0	8	62	1.24
46797336--46797658	46	7.0	46	95	0	556	28	26	9	35	1.87
46804789--46805045	71	3.6	71	85	2	284	30	24	12	33	1.92
46808309--46808364	26	2.1	27	83	6	71	35	0	0	64	0.94
46808463--46808497	18	1.9	18	94	0	61	62	5	0	31	1.18
46812670--46812700	15	2.1	15	100	0	62	48	6	0	45	1.28
46813195--46813230	17	2.2	17	95	5	65	25	2	22	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46813902--46814030	46	2.8	45	89	4	195	34	8	27	29	1.86
46823244--46823475	28	8.3	28	98	0	446	28	11	25	34	1.90
46823992--46824017	5	5.2	5	100	0	52	0	19	0	80	0.71
46827392--46827426	18	2.0	17	88	5	52	45	0	0	54	0.99
46827581--46827620	16	2.5	16	87	0	62	52	10	0	37	1.35
46827652--46827686	18	2.0	17	88	5	52	45	0	0	54	0.99
46831107--46831185	21	3.8	21	74	0	77	18	18	20	41	1.90
46831109--46831202	42	2.2	42	88	0	134	18	19	21	41	1.90
46831134--46831279	77	1.9	78	81	4	179	19	21	18	41	1.91
46842029--46842061	16	2.1	16	100	0	66	39	6	6	48	1.53
46848824--46848923	42	2.4	42	89	0	146	38	15	26	21	1.92
46851031--46851103	33	2.2	33	88	9	105	39	1	6	52	1.37
46851413--46851463	25	2.0	25	85	7	68	68	3	27	0	1.07
46852337--46852467	38	3.4	39	76	7	115	22	18	27	31	1.97
46860046--46860109	20	3.2	20	80	4	76	21	4	29	43	1.73
46866464--46866521	30	1.9	30	89	0	89	41	3	24	31	1.71
46866970--46867029	30	2.0	29	84	9	77	41	6	25	26	1.80
46876772--46876809	16	2.4	16	90	0	58	36	23	7	31	1.84
46881316--46881353	16	2.4	16	90	0	58	36	23	7	31	1.84
46882396--46882437	22	1.9	22	85	9	59	38	0	4	57	1.20
46882567--46882624	26	2.2	28	84	9	77	51	0	3	44	1.18
46883884--46883914	13	2.4	13	100	0	62	61	32	0	6	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46884428--46884604	46	3.8	46	90	3	257	28	25	9	36	1.86
46885364--46885407	17	2.6	17	82	3	54	50	22	2	25	1.61
46886604--46886676	31	2.4	30	84	9	85	45	12	12	30	1.78
46895707--46895761	11	5.0	11	79	0	65	29	32	0	38	1.58
46895696--46895760	22	2.9	22	74	2	67	29	29	0	41	1.56
46896941--46896965	7	3.6	7	100	0	50	28	0	16	56	1.41
46897607--46897649	18	2.4	18	88	0	59	20	25	6	46	1.76
46898953--46899037	44	1.9	44	88	4	127	24	22	25	27	2.00
46898987--46899284	125	2.4	126	88	0	427	26	21	19	32	1.97
46899320--46899549	95	2.4	95	83	2	273	39	18	3	38	1.68
46899320--46899593	95	2.9	95	77	4	221	41	17	3	37	1.66
46906587--46906623	18	2.1	17	90	10	56	32	0	5	62	1.18
46915962--46916198	124	1.9	121	89	2	366	27	14	16	41	1.87
46917625--46917747	60	2.0	60	95	0	219	21	26	17	34	1.96
46928711--46928749	17	2.2	18	86	4	53	53	20	10	15	1.70
46930975--46931054	33	2.4	32	78	10	90	35	18	22	23	1.96
46932596--46932662	27	2.6	25	79	11	71	53	0	4	41	1.21
46932801--46932858	26	2.2	26	84	6	73	32	8	12	46	1.71
46935366--46935395	6	4.8	6	92	8	51	50	0	0	50	1.00
46935740--46935764	8	3.1	8	100	0	50	24	0	12	64	1.27
46941608--46941646	20	1.9	21	84	5	53	46	0	5	48	1.24
46946145--46946193	16	3.0	16	85	5	62	28	4	8	59	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46948419--46948444	12	2.2	12	100	0	52	23	30	26	19	1.98
46955321--46955377	15	3.8	14	73	13	51	38	8	22	29	1.85
46955314--46955377	30	2.1	31	91	2	103	39	7	25	28	1.83
46957376--46957403	4	7.0	4	100	0	56	25	0	25	50	1.50
46958451--46958706	85	3.0	85	86	1	341	31	20	15	32	1.94
46958457--46958715	86	3.0	85	85	0	329	30	20	16	32	1.95
46959204--46959534	28	11.7	27	76	10	213	54	6	18	21	1.66
46959196--46959536	58	6.0	56	79	8	284	53	6	17	21	1.66
46960209--46960266	24	2.4	24	88	2	89	60	8	12	18	1.57
46964089--46964137	13	3.8	14	79	15	52	65	8	0	26	1.20
46964781--46964855	31	2.5	31	89	6	118	42	8	22	26	1.81
46965556--46965602	24	2.0	24	83	8	60	48	0	34	17	1.47
46970181--46970227	24	1.9	25	82	4	60	68	6	6	19	1.34
46970769--46970807	19	2.1	18	85	4	51	38	0	0	61	0.96
46971784--46971844	23	2.7	22	89	2	86	49	1	1	47	1.21
46971789--46971844	22	2.5	23	91	2	87	51	1	1	44	1.22
46971818--46971874	16	3.6	16	92	0	96	45	3	5	45	1.43
46971998--46972071	33	2.2	34	87	4	105	37	1	9	51	1.43
46972446--46972481	9	4.0	9	88	0	54	13	41	11	33	1.80
46980215--46980257	18	2.4	18	80	7	52	51	6	9	32	1.61
46985475--46985664	103	1.9	102	87	3	283	36	16	5	41	1.71
46985831--46985860	14	2.1	15	93	6	53	33	0	6	60	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46987513--46987573	27	2.2	28	80	11	65	73	1	0	24	0.92
46992037--46992079	18	2.4	18	80	0	59	44	0	4	51	1.22
46992512--46992609	51	1.9	51	81	8	119	24	29	2	43	1.65
46994188--46994255	30	2.3	30	79	5	75	29	41	16	13	1.86
46994339--46994381	18	2.4	18	88	0	59	18	27	9	44	1.80
46997922--46998207	124	2.3	124	94	0	491	30	22	17	30	1.96
47007137--47007169	16	2.0	17	88	5	50	51	0	0	48	1.00
47011603--47011750	57	2.5	59	85	9	194	30	20	25	22	1.99
47011872--47012129	66	3.9	66	99	0	507	18	17	36	27	1.93
47018108--47018140	6	5.7	6	92	3	50	57	0	33	9	1.30
47027330--47027406	38	2.0	38	100	0	154	23	23	7	45	1.78
47028615--47028680	31	2.1	31	83	5	80	42	12	3	42	1.57
47028978--47029050	27	2.7	28	87	8	107	21	26	31	20	1.98
47029241--47029265	12	2.1	12	100	0	50	24	36	24	16	1.94
47030978--47031012	3	12.3	3	88	11	56	0	34	0	65	0.93
47030982--47031013	8	4.2	8	84	15	50	0	37	0	62	0.95
47030979--47031034	11	5.3	11	79	16	57	0	35	0	64	0.94
47030978--47031034	14	4.1	14	84	11	73	0	35	0	64	0.93
47030978--47031029	17	3.1	17	81	13	56	0	34	0	65	0.93
47032286--47032310	5	5.0	5	100	0	50	60	0	0	40	0.97
47035876--47035900	10	2.5	10	100	0	50	20	8	28	44	1.79
47036149--47036189	20	2.2	19	91	8	66	31	0	19	48	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47039974--47040145	91	1.9	90	89	9	269	43	1	5	50	1.32
47040156--47040189	17	2.0	17	100	0	68	41	0	0	58	0.98
47040156--47040203	15	3.0	15	81	9	51	41	2	0	56	1.11
47040346--47040437	44	2.2	43	81	14	111	39	27	4	29	1.76
47040354--47040443	46	2.0	46	91	4	148	40	27	4	27	1.76
47040423--47040459	16	2.3	16	100	0	74	21	35	5	37	1.77
47042232--47042278	21	2.2	21	96	0	85	27	23	25	23	2.00
47049321--47049400	25	3.4	25	63	16	62	33	26	6	33	1.81
47053869--47053914	24	1.9	24	82	8	58	45	4	47	2	1.34
47060872--47060923	22	2.3	23	83	9	63	42	1	3	51	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185