genome.fa.s5.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Dt_chr8
Parameters: 2 7 7 80 10 50 1000
Length:  56894857

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  172  of  185  ( 22150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51648405--51648494	25	3.6	24	72	18	76	38	21	26	13	1.90
51648367--51648507	49	2.9	49	82	3	149	34	21	26	17	1.95
51650616--51650707	28	3.3	28	61	18	66	44	23	0	31	1.54
51650596--51650704	56	1.9	56	100	0	218	46	22	0	31	1.52
51651902--51651963	29	2.1	30	82	8	74	46	9	4	38	1.58
51657661--51657686	11	2.4	11	100	0	52	76	0	0	23	0.78
51659432--51659462	16	1.9	16	93	0	53	54	6	0	38	1.26
51663971--51664024	26	2.1	26	100	0	108	37	0	0	62	0.95
51663970--51664002	17	1.9	17	93	0	57	36	0	0	63	0.95
51664017--51664056	21	1.9	21	89	0	62	37	2	0	60	1.11
51664016--51664070	21	2.5	20	80	13	56	38	1	3	56	1.28
51664787--51665154	188	2.0	188	82	2	461	31	14	12	41	1.83
51666850--51666899	13	3.6	14	76	12	50	48	20	4	28	1.67
51666951--51667022	32	2.2	33	79	18	80	61	4	2	31	1.29
51668832--51668856	12	2.1	12	100	0	50	40	0	24	36	1.55
51668882--51669481	108	5.2	115	79	12	662	32	16	13	38	1.87
51668882--51669463	223	2.6	219	87	5	781	32	16	13	37	1.88
51680059--51680119	29	2.1	30	84	3	79	34	11	6	47	1.66
51686375--51686438	6	10.2	6	77	12	58	78	3	4	14	1.04
51686375--51686469	28	3.3	29	79	13	108	77	4	6	11	1.08
51686500--51686540	12	3.5	12	83	6	57	63	2	9	24	1.37
51690763--51691302	273	2.0	274	94	0	938	33	22	16	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51693305--51693342	20	1.9	20	89	10	60	73	2	0	23	0.95
51694956--51694991	18	2.0	18	100	0	72	50	5	0	44	1.25
51699570--51699595	11	2.4	11	100	0	52	0	42	7	50	1.31
51699650--51699692	16	2.7	16	85	0	59	55	4	0	39	1.20
51701877--51702032	50	3.1	50	90	0	240	27	20	28	23	1.99
51701896--51702078	50	3.7	49	82	4	165	28	20	26	24	1.99
51704333--51704376	11	3.8	11	82	11	61	63	0	0	36	0.95
51704339--51704381	12	3.4	13	78	15	54	58	0	0	41	0.98
51704335--51704381	24	1.9	25	95	4	87	59	0	0	40	0.97
51712668--51712708	21	2.0	21	85	0	55	34	2	26	36	1.70
51713302--51713398	23	4.1	24	76	7	83	21	21	18	38	1.94
51713282--51713370	45	1.9	47	84	4	119	20	20	19	40	1.92
51713310--51713398	25	3.7	23	77	7	70	20	21	19	39	1.93
51713357--51713404	25	1.9	25	95	0	87	18	25	20	35	1.95
51715805--51715849	15	3.1	15	77	6	56	35	0	2	62	1.08
51715805--51715849	14	3.1	14	80	3	54	35	0	2	62	1.08
51729977--51730054	39	1.9	39	85	10	104	61	1	2	34	1.18
51736089--51736116	2	14.0	2	100	0	56	0	50	0	50	1.00
51736629--51736688	29	2.1	29	100	0	120	31	11	6	50	1.65
51736719--51736743	12	2.1	12	100	0	50	8	16	16	60	1.58
51739167--51739208	21	2.0	22	85	4	59	40	2	9	47	1.49
51749166--51749216	26	2.0	26	88	0	75	19	23	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51753908--51753944	19	1.9	19	94	0	65	24	35	10	29	1.89
51753939--51753984	22	2.1	22	87	0	65	15	23	19	41	1.89
51763783--51763891	50	2.2	50	84	0	137	21	29	22	26	1.99
51763801--51763901	50	2.0	50	88	0	148	18	31	23	25	1.98
51777462--51777562	45	2.2	45	87	0	148	42	21	16	18	1.89
51777462--51777589	45	3.2	39	81	7	114	39	21	18	19	1.92
51778946--51778990	9	5.1	9	82	15	58	53	2	0	44	1.13
51779456--51779621	46	3.7	46	86	2	239	28	21	16	34	1.94
51783718--51783750	15	2.1	16	94	5	59	48	0	30	21	1.50
51785838--51785875	6	6.3	6	84	9	51	15	2	0	81	0.80
51785829--51785872	20	2.2	20	88	8	63	15	2	0	81	0.78
51786080--51786419	109	3.1	108	88	2	493	33	16	17	32	1.92
51792911--51792935	12	2.1	12	100	0	50	60	8	16	16	1.58
51798047--51798647	99	6.1	99	88	1	819	30	22	21	24	1.99
51800631--51800942	109	2.9	108	92	3	495	30	16	19	33	1.95
51802592--51802664	35	2.1	35	84	5	94	56	1	9	32	1.40
51802835--51802862	12	2.3	12	100	0	56	35	0	21	42	1.53
51804661--51804724	31	2.1	31	96	0	119	17	18	21	42	1.89
51804712--51805334	89	7.0	88	81	4	524	22	20	25	31	1.98
51804723--51805320	133	4.5	133	75	6	544	22	20	26	30	1.98
51812085--51812156	37	1.9	37	86	5	101	55	1	9	33	1.41
51815220--51815256	10	3.6	10	88	3	56	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51815298--51815516	111	2.0	108	94	2	384	30	1	11	56	1.45
51815525--51815624	40	2.4	41	83	8	123	34	3	12	51	1.54
51821084--51822043	319	3.0	317	91	1	1525	29	11	7	51	1.66
51822400--51822503	4	25.8	4	73	23	51	0	29	0	70	0.88
51822394--51822503	18	5.6	21	77	9	83	0	30	0	70	0.88
51822403--51822503	10	10.9	9	70	21	59	0	29	0	70	0.88
51822369--51822504	38	3.6	38	79	7	152	0	31	0	67	0.96
51822436--51822514	24	3.3	23	71	11	70	0	35	0	64	0.94
51825523--51826482	319	3.0	317	91	1	1525	29	11	7	51	1.66
51826839--51826942	4	25.8	4	73	23	51	0	29	0	70	0.88
51826833--51826942	18	5.6	21	77	9	83	0	30	0	70	0.88
51826833--51826942	10	11.3	10	69	19	72	0	30	0	70	0.88
51826808--51826943	38	3.6	38	79	7	152	0	31	0	67	0.96
51826875--51826953	24	3.3	23	71	11	70	0	35	0	64	0.94
51834928--51834992	3	21.7	3	83	0	85	24	67	3	4	1.24
51834964--51835010	15	3.1	15	84	0	58	12	68	8	10	1.40
51843780--51844095	157	2.0	157	98	0	614	17	45	17	19	1.86
51847586--51847629	19	2.3	20	84	7	56	27	20	11	40	1.86
51855346--51855380	12	2.9	12	95	0	61	34	17	8	40	1.80
51855359--51855439	26	2.9	29	76	12	89	25	13	9	50	1.72
51855385--51855423	14	2.9	14	85	7	55	23	17	10	48	1.78
51863710--51863744	12	2.9	12	95	0	61	34	17	8	40	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51863723--51863780	30	1.9	30	89	0	89	22	13	10	53	1.70
51863749--51863804	26	2.2	25	87	6	85	23	14	8	53	1.68
51863750--51863804	12	4.4	12	84	8	74	23	14	9	52	1.70
51872967--51873147	22	7.9	22	81	15	217	29	1	13	55	1.45
51872967--51873123	49	3.5	42	79	16	167	28	1	13	56	1.45
51872965--51873123	71	2.4	64	87	9	221	28	1	13	56	1.45
51872989--51873147	49	3.4	49	81	16	228	29	1	13	55	1.47
51872967--51873147	90	2.0	91	93	3	310	29	1	13	55	1.45
51872967--51873126	41	3.6	41	81	16	187	28	1	13	56	1.46
51872893--51873126	22	12.1	19	69	23	150	30	0	13	55	1.44
51875051--51875085	6	5.8	6	93	0	61	31	34	34	0	1.58
51878040--51878285	19	12.5	19	68	21	134	54	12	0	32	1.41
51878098--51878283	22	9.0	21	72	20	133	55	12	0	32	1.37
51878098--51878283	41	4.5	41	73	17	170	55	12	0	32	1.37
51877950--51878149	52	4.0	50	84	5	271	53	13	1	32	1.46
51878103--51878284	83	2.2	84	77	13	198	55	12	0	32	1.37
51878454--51878498	3	15.3	3	90	4	74	0	35	0	64	0.94
51878455--51878506	23	2.3	23	93	0	86	0	38	0	61	0.96
51878458--51878506	20	2.5	20	93	0	80	0	38	0	61	0.96
51878671--51878708	5	7.6	5	93	0	67	21	57	18	2	1.52
51882974--51883102	41	3.1	41	89	1	204	30	19	25	24	1.98
51887567--51887594	13	2.2	13	100	0	56	46	21	7	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51896158--51896193	18	2.0	18	100	0	72	55	11	5	27	1.57
51908268--51908301	14	2.4	14	86	13	52	50	2	0	47	1.16
51909131--51909221	44	2.0	47	81	14	111	39	20	24	15	1.91
51909132--51909231	22	4.2	24	79	13	86	40	20	24	16	1.91
51910196--51910239	5	8.8	5	100	0	88	59	0	0	40	0.98
51911969--51912224	142	1.8	142	87	0	386	33	19	14	31	1.93
51916060--51916098	21	1.9	20	89	5	60	66	2	2	28	1.18
51916517--51916567	8	6.9	8	74	17	56	33	1	0	64	1.05
51916522--51916572	14	3.6	14	79	12	52	35	1	0	62	1.06
51916524--51916572	21	2.3	22	75	10	57	34	2	0	63	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185